BAC Information

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BAC

Clone NameB6Ng01-129P15
Chromosome11 (Build37)
Map Location 121,049,605 - 121,199,914
singlet/doubletdoublet
Overlap gene1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l
Upstream geneLOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r
Downstream geneRab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129P15.bB6Ng01-129P15.g
ACCDH931414DH931415
length1,0801,049
definitionDH931414|Mus musculus domesticus DNA, BAC clone: B6Ng01-129P15, 5' end.DH931415|Mus musculus domesticus DNA, BAC clone: B6Ng01-129P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,198,845 - 121,199,914)(121,049,605 - 121,050,742)
sequence
gaattctccacagaggtcaaggctgtcaagttgcggagagataggtgggt
ttggtgttactttctaaatgcagttttatttctctaaaaaatagagtgta
ttaaaatgtcagtaactgtagcttgtgacccagagcagggaaaaagagtt
ttctcttctgtcccggggaggctggaagtcaggctggcttctggactcct
cagagggacagtctaggtgggcaggggatgtccacaggtctgcttaggaa
gcctccacctcaggggtcaggcaggccttgtcaaatgctgggtgttccca
tgctaaaaggagaggagaacttggaaactgatcttattattgattcttac
ctggtgaaagtatacagcagtgcggtatagagcttgccctgtttgcttgt
tgaccatgagaaagcagaggttcattacttgggttttaatttgatgtgat
ttatgcatcatattctttagatttctatcagctgtagagtaggttcatta
gggtggtgcttacaagcccaaagtaattgacccaaactaatgttcttgta
tttgaaaactttgtgggtggtattttgttctctttgtttattttgttgaa
tcagggttttactaggtagcccaagctggcctcgctgttctgcctcagcc
tcccaagtgtcaggagggattcaggcatatgccattactcccggcacagc
ttgttttggtttttttaaaaattatttaattaattatatgtaagtaaact
gtagctgtcttcagacactttcagaagagggagtcagatctcattacgga
tggttgtgagccaccatgtgggttgctggggatttggactccggactttc
ggaagagcatcgggtgctctttacccactgagtcatctctctcagtcctc
cggcacagttattcttaacagtagacatgtttaagaataagagcgagggt
agtttctgagaggtgtcttcaccatgctaagctctcaatagatagtctcg
catgaatgtatccataagctacacaaggtttcttgacgctgaactcttgc
agtgatggcttagctcttggtatgcacaac
gaattcactttgtaaaccagggtggcctcgaactcatagacgttcatctg
cctctgcctcttgagtgctgggactaaaggcatatgccactaggagcatg
ttttttaaaactttcttaggccagtagaatttctaatctagatttcagag
caatcccttgttcgtcggtacatacatctatacccaagagaccagtccct
acatagaagatcatatcatatgcccatgtgctccaaggagagtggacaca
aaggtctggtgtgtgagtgaaacatggcacagtcataagtagaatagcct
ctactgttaactagaacatattaaaagctgtgtattaacctaaggtgact
gcggccagtgagaagggtgctggaaggcctactaggtagaagatgctcta
gggccagtaagatgccccagtgggtagaggtgcttatgtgcaagcctagt
gtttgagctcaattccctgagcccatggaaaggtggaagatgagaatcag
ttttacagagttgtcttctgaccgccacacatatgcccataccatatata
cacacaaacgtgtgcgtgcacacacacatgcacacacacacacatgcagt
cacagtaatgatactaaatattttaaaaacatcatgtaaaggatattcag
tatccaactctctagtttcctttagaaacaatgaaaaggataagatgatg
caacagtaaagtttgagtttcagtccctgaaacttgtacagagacagaag
gaaagacccaactctacagagttatcttctgaacgctgcacatttcacca
cggcacacacattccagtaatagtaaattaaattagttttttttaaaaga
gcactacagatgtagacctactaatggcagggttctatgggacgaaaacc
acttacttcagatcaattttgcttaatagatcagttgttaacaggaaaag
aaacacttcaaaaatttgatttttctacaaataaccaaaacatagtattt
tttgcctttgttttgcataaaagtgagtttggagggactggagaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121198845_121199914
seq2: B6Ng01-129P15.b_49_1128 (reverse)

seq1  GTTGTGCATAGCCAAGGGCATAGCCATCACCTTGC-AGAGGTCAGCGTCA  49
      |||||||||| ||||| ||  |||||||||  ||| |||| |||||||||
seq2  GTTGTGCATA-CCAAGAGCTAAGCCATCAC--TGCAAGAGTTCAGCGTCA  47

seq1  AAGAAACTTGTG-AGCTTAGGGAAACA-TCATGACCAGAC-ATCTCACTG  96
      |  || |||||| |||||| ||| ||| ||||| | |||| |||| | ||
seq2  AGAAACCTTGTGTAGCTTATGGATACATTCATG-CGAGACTATCT-ATTG  95

seq1  AGAGCTTAGCATGGTG-AGACACCTCTCAG-AACTACCCTCGCTCTTATT  144
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AGAGCTTAGCATGGTGAAGACACCTCTCAGAAACTACCCTCGCTCTTATT  145

seq1  CTT-AACATGTCTACTGTTAAGAA-AACTGTGCCGGA-GACTG-GAGAGA  190
      ||| |||||||||||||||||||| |||||||||||| ||||| ||||||
seq2  CTTAAACATGTCTACTGTTAAGAATAACTGTGCCGGAGGACTGAGAGAGA  195

seq1  TGGCTCAGTGGGT-AAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTT  239
      || |||||||||| |||||||||||| |||||||||||| ||||||||| 
seq2  TGACTCAGTGGGTAAAGAGCACCCGA-TGCTCTTCCGAAAGTCCGGAGTC  244

seq1  CAAAT-CCCAGCAA-CCACATGGTGGCTCACAACCATCCGTAATGAGATC  287
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAATCCCCAGCAACCCACATGGTGGCTCACAACCATCCGTAATGAGATC  294

seq1  TGACTCCCTCTTCTG-AAGTGTCTGAAGACAGCTACAGTTTACTTACATA  336
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCTTCTGAAAGTGTCTGAAGACAGCTACAGTTTACTTACATA  344

seq1  TAATTAATTAATTAATTTTTAAAAAA--CCAAACAAGCTGTGCCGGGAGT  384
      ||||||||||| ||||||||||||||  | ||||||||||||||||||||
seq2  TAATTAATTAAATAATTTTTAAAAAAACCAAAACAAGCTGTGCCGGGAGT  394

seq1  AATGGCATATGCCTGAATCCCTCCTGACACTTGGGAGGCTGAGGCAGAAC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATATGCCTGAATCCCTCCTGACACTTGGGAGGCTGAGGCAGAAC  444

seq1  AGCGAGGCCAGCTTGGGCTACCTAGTAAAACCCTGATTCAACAAAATAAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGCCAGCTTGGGCTACCTAGTAAAACCCTGATTCAACAAAATAAA  494

seq1  CAAAGAGAACAAAATACCACCCACAAAGTTTTCAAATACAAGAACATTAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAACAAAATACCACCCACAAAGTTTTCAAATACAAGAACATTAG  544

seq1  TTTGGGTCAATTACTTTGGGCTTGTAAGCACCACCCTAATGAACCTACTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCAATTACTTTGGGCTTGTAAGCACCACCCTAATGAACCTACTC  594

seq1  TACAGCTGATAGAAATCTAAAGAATATGATGCATAAATCACATCAAATTA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGATAGAAATCTAAAGAATATGATGCATAAATCACATCAAATTA  644

seq1  AAACCCAAGTAATGAACCTCTGCTTTCTCATGGTCAACAAGCAAACAGGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAGTAATGAACCTCTGCTTTCTCATGGTCAACAAGCAAACAGGG  694

seq1  CAAGCTCTATACCGCACTGCTGTATACTTTCACCAGGTAAGAATCAATAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTATACCGCACTGCTGTATACTTTCACCAGGTAAGAATCAATAA  744

seq1  TAAGATCAGTTTCCAAGTTCTCCTCTCCTTTTAGCATGGGAACACCCAGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAGTTTCCAAGTTCTCCTCTCCTTTTAGCATGGGAACACCCAGC  794

seq1  ATTTGACAAGGCCTGCCTGACCCCTGAGGTGGAGGCTTCCTAAGCAGACC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAAGGCCTGCCTGACCCCTGAGGTGGAGGCTTCCTAAGCAGACC  844

seq1  TGTGGACATCCCCTGCCCACCTAGACTGTCCCTCTGAGGAGTCCAGAAGC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACATCCCCTGCCCACCTAGACTGTCCCTCTGAGGAGTCCAGAAGC  894

seq1  CAGCCTGACTTCCAGCCTCCCCGGGACAGAAGAGAAAACTCTTTTTCCCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGACTTCCAGCCTCCCCGGGACAGAAGAGAAAACTCTTTTTCCCT  944

seq1  GCTCTGGGTCACAAGCTACAGTTACTGACATTTTAATACACTCTATTTTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGTCACAAGCTACAGTTACTGACATTTTAATACACTCTATTTTT  994

seq1  TAGAGAAATAAAACTGCATTTAGAAAGTAACACCAAACCCACCTATCTCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATAAAACTGCATTTAGAAAGTAACACCAAACCCACCTATCTCT  1044

seq1  CCGCAACTTGACAGCCTTGACCTCTGTGGAGAATTC  1070
      ||||||||||||||||||||||||||||||||||||
seq2  CCGCAACTTGACAGCCTTGACCTCTGTGGAGAATTC  1080

seq1: chr11_121049605_121050742
seq2: B6Ng01-129P15.g_69_1117

seq1  GAATTCACTTTGTAAACCAGGGTGGCCTCGAACTCATAGACGTTCATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAAACCAGGGTGGCCTCGAACTCATAGACGTTCATCTG  50

seq1  CCTCTGCCTCTTGAGTGCTGGGACTAAAGGCATATGCCACTAGGAGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTTGAGTGCTGGGACTAAAGGCATATGCCACTAGGAGCATG  100

seq1  TTTTTTAAAACTTTCTTAGGCCAGTAGAATTTCTAATCTAGATTTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAACTTTCTTAGGCCAGTAGAATTTCTAATCTAGATTTCAGAG  150

seq1  CAATCCCTTGTTCGTCGGTACATACATCTATACCCAAGAGACCAGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTTGTTCGTCGGTACATACATCTATACCCAAGAGACCAGTCCCT  200

seq1  ACATAGAAGATCATATCATATGCCCATGTGCTCCAAGGAGAGTGGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAGATCATATCATATGCCCATGTGCTCCAAGGAGAGTGGACACA  250

seq1  AAGGTCTGGTGTGTGAGTGAAACATGGCACAGTCATAAGTAGAATAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGGTGTGTGAGTGAAACATGGCACAGTCATAAGTAGAATAGCCT  300

seq1  CTACTGTTAACTAGAACATATTAAAAGCTGTGTATTAACCTAAGGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTAACTAGAACATATTAAAAGCTGTGTATTAACCTAAGGTGACT  350

seq1  GCGGCCAGTGAGAAGGGTGCTGGAAGGCCTACTAGGTAGAAGATGCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCAGTGAGAAGGGTGCTGGAAGGCCTACTAGGTAGAAGATGCTCTA  400

seq1  GGGCCAGTAAGATGCCCCAGTGGGTAGAGGTGCTTATGTGCAAGCCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGTAAGATGCCCCAGTGGGTAGAGGTGCTTATGTGCAAGCCTAGT  450

seq1  GTTTGAGCTCAATTCCCTGAGCCCATGGAAAGGTGGAAGATGAGAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGCTCAATTCCCTGAGCCCATGGAAAGGTGGAAGATGAGAATCAG  500

seq1  TTTTACAGAGTTGTCTTCTGACCGCCACACATATGCCCATACCATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAGTTGTCTTCTGACCGCCACACATATGCCCATACCATATATA  550

seq1  CACACAAACGTGTGCGTGCACACACACATGCACACACACACACATGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACGTGTGCGTGCACACACACATGCACACACACACACATGCAGT  600

seq1  CACAGTAATGATACTAAATATTTTAAAAACATCATGTAAAGGATATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAATGATACTAAATATTTTAAAAACATCATGTAAAGGATATTCAG  650

seq1  TATCCAACTCTCTAGTTTCCTTTAGAAACAATGAAAAGGATAAGATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACTCTCTAGTTTCCTTTAGAAACAATGAAAAGGATAAGATGATG  700

seq1  CAACAGTAAAGTTTGAG-TTCAGTCCCTGAAACTTGTACAGAGACAGAAG  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAACAGTAAAGTTTGAGTTTCAGTCCCTGAAACTTGTACAGAGACAGAAG  750

seq1  GAAAGACCCAACTCTACAGAGTTATCTTCTGAACGCTGCACA-TTCACCA  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAAGACCCAACTCTACAGAGTTATCTTCTGAACGCTGCACATTTCACCA  800

seq1  CGGCACACACATTCCAGTAATAGTAAATTAAATTAGTTTTTTTTAAAAAG  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGGCACACACATTCCAGTAATAGTAAATTAAATTAGTTTTTTTT-AAAAG  849

seq1  AGCACTACAGATGTAGACCTACTAATGGCAGGGTTCTAT-GGACG-AAAC  896
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AGCACTACAGATGTAGACCTACTAATGGCAGGGTTCTATGGGACGAAAAC  899

seq1  CACTTACTTCAAGATCAAATTTTGCTTAATAAGATCAGTTGTTTAACAGG  946
      |||||||||| ||||| ||||||||||||| |||||||||| ||||||||
seq2  CACTTACTTC-AGATC-AATTTTGCTTAAT-AGATCAGTTG-TTAACAGG  945

seq1  AAAAGAAACAACTTCAAAAAATGTGA-TTTTCTACAAATAA-CAAAACAT  994
      ||||||||| ||||| |||||| ||| |||||||||||||| ||||||||
seq2  AAAAGAAAC-ACTTC-AAAAATTTGATTTTTCTACAAATAACCAAAACAT  993

seq1  AGTATTTTATGCCTTTGTTTTTGCATAAAAGT-AG-TTGGAGGGACTGGA  1042
      |||||||| |||||||| |||||||||||||| || ||||||||||||||
seq2  AGTATTTTTTGCCTTTG-TTTTGCATAAAAGTGAGTTTGGAGGGACTGGA  1042

seq1  GAGATGGCTCAGTGGTTTACAGCACTGATTGCTCTTCCAGAGGACCTGAG  1092
      || ||||                                           
seq2  GAAATGG-------------------------------------------  1049

seq1  TTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGG  1138
                                                    
seq2  ----------------------------------------------  1049