BAC Information

Click to search

BAC

Clone NameB6Ng01-130J21
Chromosome11 (Build37)
Map Location 101,867,710 - 102,059,241
singlet/doubletdoublet
Overlap geneMpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5
Upstream geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik
Downstream geneBC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130J21.bB6Ng01-130J21.g
ACCDH931886DH931887
length1,133681
definitionDH931886|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J21, 5' end.DH931887|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,867,710 - 101,868,840)(102,058,562 - 102,059,241)
sequence
gaattcaccgattttgctggcctttgagtgccgtgccgggagtaccagcc
tgtctccgccttcccagcactagagcgaaggtcatctgacttgctcactg
ttttaatgtgaactctgggaaccagactcaggcgctcctgctttctggac
aatcgctctcccagctgagccacctcccaggcttgggctgtccgttcttt
gtgcagttaattctcatattgaaaagagaaaccatgcagacaggtgcccc
tccccccctctgcccccatactgcacagatgggtttcggcaacaccagct
ctcagacatgcatctaaaatgcaacatccctactgatatccacaatggaa
ccctgacacatgtcttggccaatcaggttttcacagaatgagagcaacat
gtagcttttcccgaaaagcacaggaacttggaagaattgtgtcgctgtga
ggccgcccctaagataccctgtctccatgtggcaccgggccaatccccca
aagagtagctaaaagccctttccaatatcactggcttcagacttttattt
ccccgttgatttgatgttaaacatcctcatgagcccacaagagcctcctg
atctgtccaacctctactgcagctttatctcctggttcactgtccacact
aaggtacccagtccttagcacagctactgtgggtcacaccttcgaccctt
ggcacgtgttgctcctgtatagcaaatgtttcctttcttctccccctaga
agacttctatttacacctcaacataaaagtcactgcctctgggaagccct
ccctgacttcttgctgtgggtccctgaaaacaggcaggcttgaattctga
gtataggcctctcactcattgacaaaagtgggtgagctatccccgacttc
ctgcttcatctacctgacacctaaaggctgggacctccaaaagtcctcag
agctgcttccaagtggcctccacagtccctctacctcccgcaagtctctt
cagaactccgctctagaagattctgatggccatgggctagcctggtggcc
catgaagatccaggaagaagcaatgtggatataagaaaggctttgtagct
tgttcttcccagaacttctggaaaagaatcatt
gaattcagtgtcacagacccggagccactggtgggctcatcttcagagct
aatggtagggtgggtgtggaagagctggcatgctgagctttggattagag
cttagactgttgcccaaagcaccctcccatgtccctcatcaggatattca
ccatggcaacggcacccagcaagcattctacaacgatccctctgtgctct
acatctccctgcatcgctacgacaacgggaacttctttccaggctctggg
gctcctgaagaggtacagttcctaggccccctttggagtccttcagggag
gtaacaggccaggacctgccaggaaatcacagttcgtgatgctggtcccc
gtgacatctgagggctcctagtgggaggatcacacaggtctgactgccag
ttgagcaaagcagaggtcaaaggaggcaagggttggggcagtgtttgggg
tggccaggcagtgatagcaacctctcctaccttattgccaggttggtgga
gggccaggtgtggggtacaacgtaaatgtggcgtggacaggaggtgtgga
tccccccattggagatgtggaatacctgacagccttcaagtggggactga
gaagggccaaaggaggggtggggcccagagctggcaggggcagcaagcac
tcagttgggggtggtggaggggtatggcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101867710_101868840
seq2: B6Ng01-130J21.b_47_1179

seq1  GAATTCACCGATTTTGCTGGCCTTTGAGTGCCGTGCCGGGAGTACCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGATTTTGCTGGCCTTTGAGTGCCGTGCCGGGAGTACCAGCC  50

seq1  TGTCTCCGCCTTCCCAGCACTAGAGCGAAGGTCATCTGACTTGCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCGCCTTCCCAGCACTAGAGCGAAGGTCATCTGACTTGCTCACTG  100

seq1  TTTTAATGTGAACTCTGGGAACCAGACTCAGGCGCTCCTGCTTTCTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTGAACTCTGGGAACCAGACTCAGGCGCTCCTGCTTTCTGGAC  150

seq1  AATCGCTCTCCCAGCTGAGCCACCTCCCAGGCTTGGGCTGTCCGTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTCTCCCAGCTGAGCCACCTCCCAGGCTTGGGCTGTCCGTTCTTT  200

seq1  GTGCAGTTAATTCTCATATTGAAAAGAGAAACCATGCAGACAGGTGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTAATTCTCATATTGAAAAGAGAAACCATGCAGACAGGTGCCCC  250

seq1  TCCCCCCCTCTGCCCCCATACTGCACAGATGGGTTTCGGCAACACCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCTCTGCCCCCATACTGCACAGATGGGTTTCGGCAACACCAGCT  300

seq1  CTCAGACATGCATCTAAAATGCAACATCCCTACTGATATCCACAATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACATGCATCTAAAATGCAACATCCCTACTGATATCCACAATGGAA  350

seq1  CCCTGACACATGTCTTGGCCAATCAGGTTTTCACAGAATGAGAGCAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACACATGTCTTGGCCAATCAGGTTTTCACAGAATGAGAGCAACAT  400

seq1  GTAGCTTTTCCCGAAAAGCACAGGAACTTGGAAGAATTGTGTCGCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTCCCGAAAAGCACAGGAACTTGGAAGAATTGTGTCGCTGTGA  450

seq1  GGCCGCCCCTAAGATACCCTGTCTCCATGTGGCACCGGGCCAATCCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCCCTAAGATACCCTGTCTCCATGTGGCACCGGGCCAATCCCCCA  500

seq1  AAGAGTAGCTAAAAGCCCTTTCCAATATCACTGGCTTCAGACTTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGCTAAAAGCCCTTTCCAATATCACTGGCTTCAGACTTTTATTT  550

seq1  CCCCGTTGATTTGATGTTAAACATCCTCATGAGCCCACAAGAGCCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTTGATTTGATGTTAAACATCCTCATGAGCCCACAAGAGCCTCCTG  600

seq1  ATCTGTCCAACCTCTACTGCAGCTTTATCTCCTGGTTCACTGTCCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCAACCTCTACTGCAGCTTTATCTCCTGGTTCACTGTCCACACT  650

seq1  AAGGTACCCAGTCCTTAGCACAGCTACTGTGGGTCACACCTTCGACCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCCAGTCCTTAGCACAGCTACTGTGGGTCACACCTTCGACCCTT  700

seq1  GGCACGTGTTGCTCCTGTATAGCAAATGTTTCCTTTCTTCTCCCCCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTGTTGCTCCTGTATAGCAAATGTTTCCTTTCTTCTCCCCCTAGA  750

seq1  AGACTTCTATTTACACCTCAACATAAAAGTCACTGCCTCTGGGAAGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTATTTACACCTCAACATAAAAGTCACTGCCTCTGGGAAGCCCT  800

seq1  CCCTGACTTCTTGCTGTGGGTCCCTGAAAACAGGCAGGCTTGAATTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTCTTGCTGTGGGTCCCTGAAAACAGGCAGGCTTGAATTCTGA  850

seq1  GTATAGGCCTCTCACTCATTGACAAAAGTGGGGTGAGCTATCCCCGACTT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATAGGCCTCTCACTCATTGACAAAAGT-GGGTGAGCTATCCCCGACTT  899

seq1  CCTGCTTCATCTACCTGACACCTAAAGGCTGGGACCTCCAAAAGTCCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCATCTACCTGACACCTAAAGGCTGGGACCTCCAAAAGTCCTCA  949

seq1  GAGCTGCTTCCAAGTGGCCTCCACAGTCCCTCTACCTCCCGCAAGTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTCCAAGTGGCCTCCACAGTCCCTCTACCTCCCGCAAGTCTCT  999

seq1  TCAG-ACTCCGCTCTAGAAGATTCTGATGGCCATGGGCTAGGCTGTTGGC  1049
      |||| |||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TCAGAACTCCGCTCTAGAAGATTCTGATGGCCATGGGCTAGCCTGGTGGC  1049

seq1  CCATGAAGATCCAGGAAG-AGCAATGT-GATATAAGAAAGGCTTTGTAGC  1097
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CCATGAAGATCCAGGAAGAAGCAATGTGGATATAAGAAAGGCTTTGTAGC  1099

seq1  -TGTTCTTCCCCAGAACTTTCTGGAAAAG-ATCATT  1131
       ||||||| |||||||| ||||||||||| ||||||
seq2  TTGTTCTT-CCCAGAAC-TTCTGGAAAAGAATCATT  1133

seq1: chr11_102058562_102059241
seq2: B6Ng01-130J21.g_70_750 (reverse)

seq1  GAGGCCATACCCCTCCACCA-CCCCAACTGAGTGCTTGCTGCCCCTGCCA  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGCCATACCCCTCCACCACCCCCAACTGAGTGCTTGCTGCCCCTGCCA  50

seq1  GCTCTGGGCCCCACCCCTCCTTTGGCCCTTCTCAGTCCCCACCTGAAGGC  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTCTGGGCCCCACCCCTCCTTTGGCCCTTCTCAGTCCCCACTTGAAGGC  100

seq1  TGTCAGGTATTCCACATCTCCAATGGGGGGATCCACACCTCCTGTCCACG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGTATTCCACATCTCCAATGGGGGGATCCACACCTCCTGTCCACG  150

seq1  CCACATTTACGTTGTACCCCACACCTGGCCCTCCACCAACCTGGCAATAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTACGTTGTACCCCACACCTGGCCCTCCACCAACCTGGCAATAA  200

seq1  GGTAGGAGAGGTTGCTATCACTGCCTGGCCACCCCAAACACTGCCCCAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGAGGTTGCTATCACTGCCTGGCCACCCCAAACACTGCCCCAAC  250

seq1  CCTTGCCTCCTTTGACCTCTGCTTTGCTCAACTGGCAGTCAGACCTGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCCTTTGACCTCTGCTTTGCTCAACTGGCAGTCAGACCTGTGT  300

seq1  GATCCTCCCACTAGGAGCCCTCAGATGTCACGGGGACCAGCATCACGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCCACTAGGAGCCCTCAGATGTCACGGGGACCAGCATCACGAAC  350

seq1  TGTGATTTCCTGGCAGGTCCTGGCCTGTTACCTCCCTGAAGGACTCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTCCTGGCAGGTCCTGGCCTGTTACCTCCCTGAAGGACTCCAAA  400

seq1  GGGGGCCTAGGAACTGTACCTCTTCAGGAGCCCCAGAGCCTGGAAAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCTAGGAACTGTACCTCTTCAGGAGCCCCAGAGCCTGGAAAGAAG  450

seq1  TTCCCGTTGTCGTAGCGATGCAGGGAGATGTAGAGCACAGAGGGATCGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTTGTCGTAGCGATGCAGGGAGATGTAGAGCACAGAGGGATCGTT  500

seq1  GTAGAATGCTTGCTGGGTGCCGTTGCCATGGTGAATATCCTGATGAGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGCTTGCTGGGTGCCGTTGCCATGGTGAATATCCTGATGAGGGA  550

seq1  CATGGGAGGGTGCTTTGGGCAACAGTCTAAGCTCTAATCCAAAGCTCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGGTGCTTTGGGCAACAGTCTAAGCTCTAATCCAAAGCTCAGC  600

seq1  ATGCCAGCTCTTCCACACCCACCCTACCATTAGCTCTGAAGATGAGCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCTCTTCCACACCCACCCTACCATTAGCTCTGAAGATGAGCCCA  650

seq1  CCAGTGGCTCCGGGTCTGTGACACTGAATTC  680
      |||||||||||||||||||||||||||||||
seq2  CCAGTGGCTCCGGGTCTGTGACACTGAATTC  681