BAC Information

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BAC

Clone NameB6Ng01-131A11
Chromosome11 (Build37)
Map Location 48,561,018 - 48,562,058
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163
Downstream geneLOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131A11.bB6Ng01-131A11.g
ACCDH932190DH932191
length5521,024
definitionDH932190|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A11, 5' end.DH932191|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttagtttgtgcttcacttattgaaactatttccatctttagg
ttttgaagacttttctttgtttccttcaactgtttgtttgtgttttcttg
gatttcttttgcagatttattcatttcttccaattttctgtttgtttttt
tttcctggatattttaaagggatttcctcattgaggacctctgtcatctt
catatagtttcttgtaaggtcttttctgcgcttcagctatgttggtatat
ttgggacctgctatggtaagttatccaggctttagtggggacatattgtc
ttggatgctattgattgtgttttttatgctggtgtctagacatctgggtt
tggggtgatctatgtgtttatttttggatttgttaggttgggtaggtatt
tggttccttgatttctgtttcctctctggattttcagagtgtgattgttg
tatgttgcctgtttatctgttctgctcatctgttgtgttcacagggagtg
cctactagtattggaggctacaatactggggtgggttgggggaaggaaaa
tt
gaattctgaactatttggatgtctggttatcaatgctgagtgagccaaaa
gttttggttttcccttcacttatttaatgtttaggcatttacgtgtgtgt
gtatgctcatggaagctacaagggacattacattccttagagctggagtc
acagtgggttgttctgggctctggactctagtcttctgacagagcagtaa
gcactcttaaccacagagccctctctctggttcccagaaaataaacactt
cctgaagttttttaatatactaagtactcaaatatcataactcactactg
ttagggtgagagtcagagaaactgaagtagtcttgggaaatggttagcac
ttaggcagtcttgaagaatacttctttcctgcagtagagtgagaatccag
cgttttcttctgcccacactgtaaagagtgtaccaaatgagctgagattc
tgtgtgttcatttgttttggctaggtggtcctgggaaatgtaaggttgtc
tgaaaggacaaagcctgcatcccttgttgaccatcagatgcttcttttct
tccttatccctcctctctctgtctctgtctgcctctgcctctgcctctgt
ctctctctcctctgtgtgtgtgtgtgtgtgattgggaaatataacactgg
gctaacattgccattcctctttcaaatttctcattttcatttttaacaag
ctctgaagtactctcctgcttttctctctaaccagaagggaaaataattc
atcaacacaacgataaccagtcttcctgttcactgtcaaagctactacca
cagaattaattttaaaagaagacccacaagggtgcgtgtggttttcagag
ctccgatgctcaaggcaaggcagtgagggtgcagtaagggagatatttaa
ggatgcatgctcaccagtgaggacactaatgctggctgagactttgtcac
actgttggctacccataaaatcagtgcatcttggtctgccttcaagcgag
gaaaacaggtggaatccttggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48561018_48562058
seq2: B6Ng01-131A11.g_68_1091 (reverse)

seq1  AATCCTAAGGATTCCACCTGTTTTCCTCTGGCTTCTGATGGGCAGGACCA  50
      ||||| ||||||||||||||||||||||  |||  |||  |||| |||||
seq2  AATCC-AAGGATTCCACCTGTTTTCCTC--GCT--TGA-AGGCA-GACCA  43

seq1  AGATGGCACTGATTTTTATTGGGTAGCCAACAGTGTGAACAAAAGTCTTC  100
      |||| |||||||||||   |||||||||||||||||||   |||||| ||
seq2  AGAT-GCACTGATTTT--ATGGGTAGCCAACAGTGTGA--CAAAGTC-TC  87

seq1  AGCCCAGGCATAGGTGTCCTCACTGGTGAGCATGCATCCTTAAAATATCT  150
      ||||   ||||  |||||||||||||||||||||||||||| ||||||||
seq2  AGCC--AGCATTAGTGTCCTCACTGGTGAGCATGCATCCTT-AAATATCT  134

seq1  CCCTTACCTGCACCCTCACTGGCCTTTGCCTTGAGCATCGGAGCTCTGAA  200
      |||||| ||||||||||||||  | |||||||||||||||||||||||||
seq2  CCCTTA-CTGCACCCTCACTG--CCTTGCCTTGAGCATCGGAGCTCTGAA  181

seq1  AACCACACGCACCCTTGTGGGTCTTCTTTTAAAATTAATTCTGTGGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACGCACCCTTGTGGGTCTTCTTTTAAAATTAATTCTGTGGTAGT  231

seq1  AGCTTTGACAGTGAACAGGAAGACTGGTTATCGTTGTGTTGATGAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGACAGTGAACAGGAAGACTGGTTATCGTTGTGTTGATGAATTAT  281

seq1  TTTCCCTTCTGGTTAGAGAG-AAAGCAGGAGAGTACTTCAGAGCTTGTT-  348
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TTTCCCTTCTGGTTAGAGAGAAAAGCAGGAGAGTACTTCAGAGCTTGTTA  331

seq1  AAAATGAAAATGAGAAATTTGAAAGAGGAATGGCAATGTTAGCCCAGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATGAGAAATTTGAAAGAGGAATGGCAATGTTAGCCCAGTGT  381

seq1  TATATTTCCCAATCACACACACACACACACAGAGGAGAGAGAGACAGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCCAATCACACACACACACACACAGAGGAGAGAGAGACAGAGG  431

seq1  CAGAGGCAGAGGCAGACAGAGACAGAGAGAGGAGGGATAAGGAAGAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAGGCAGACAGAGACAGAGAGAGGAGGGATAAGGAAGAAAAG  481

seq1  AAGCATCTGATGGTCAACAAGGGATGCAGGCTTTGTCCTTTCAGACAACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTGATGGTCAACAAGGGATGCAGGCTTTGTCCTTTCAGACAACC  531

seq1  TTACATTTCCCAGGACCACCTAGCCAAAACAAATGAACACACAGAATCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCCAGGACCACCTAGCCAAAACAAATGAACACACAGAATCTC  581

seq1  AGCTCATTTGGTACACTCTTTACAGTGTGGGCAGAAGAAAACGCTGGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTGGTACACTCTTTACAGTGTGGGCAGAAGAAAACGCTGGATT  631

seq1  CTCACTCTACTGCAGGAAAGAAGTATTCTTCAAGACTGCCTAAGTGCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTACTGCAGGAAAGAAGTATTCTTCAAGACTGCCTAAGTGCTAA  681

seq1  CCATTTCCCAAGACTACTTCAGTTTCTCTGACTCTCACCCTAACAGTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCAAGACTACTTCAGTTTCTCTGACTCTCACCCTAACAGTAGT  731

seq1  GAGTTATGATATTTGAGTACTTAGTATATTAAAAAACTTCAGGAAGTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGATATTTGAGTACTTAGTATATTAAAAAACTTCAGGAAGTGTT  781

seq1  TATTTTCTGGGAACCAGAGAGAGGGCTCTGTGGTTAAGAGTGCTTACTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGGGAACCAGAGAGAGGGCTCTGTGGTTAAGAGTGCTTACTGC  831

seq1  TCTGTCAGAAGACTAGAGTCCAGAGCCCAGAACAACCCACTGTGACTCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGAAGACTAGAGTCCAGAGCCCAGAACAACCCACTGTGACTCCA  881

seq1  GCTCTAAGGAATGTAATGTCCCTTGTAGCTTCCATGAGCATACACACACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGGAATGTAATGTCCCTTGTAGCTTCCATGAGCATACACACACA  931

seq1  CGTAAATGCCTAAACATTAAATAAGTGAAGGGAAAACCAAAACTTTTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATGCCTAAACATTAAATAAGTGAAGGGAAAACCAAAACTTTTGGC  981

seq1  TCACTCAGCATTGATAACCAGACATCCAAATAGTTCAGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGCATTGATAACCAGACATCCAAATAGTTCAGAATTC  1024