BAC Information

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BAC

Clone NameB6Ng01-131C12
Chromosome11 (Build37)
Map Location 60,372,588 - 60,541,647
singlet/doubletdoublet
Overlap geneLOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii
Upstream geneNlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5
Downstream geneSmcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131C12.bB6Ng01-131C12.g
ACCDH932287DH932288
length1,0931,087
definitionDH932287|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C12, 5' end.DH932288|Mus musculus domesticus DNA, BAC clone: B6Ng01-131C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,540,541 - 60,541,647)(60,372,588 - 60,373,683)
sequence
gaattctcagcagtcgtacttagtctcacatctgaccttgtgtgtacttg
taatgagagcctcagtgtggagtctgagctcatggtcccttggtgggcca
ggcagacaaaactgcagttagcccaaaggcccacattctgcctctcaagt
tcgcccctgttagagtgcctggtggttccatttccgtttggcctgcctga
cacataatgggaaaagagctctgccatctgtcgtgggaactctatcagtc
tcttccctcctgaaacccgggatgccagaccctggacttccatagaacag
ctgtgtctgtttatgggaaacctactgtatgctggccagggcaagatggc
cactaagagcttggcccaggagatatacactgatctagagcacaaaacaa
atcaataaagaatggtgactggagtcctgatgccaagggagaattgtgag
tgtttgtgcagcctgctctctaagctgccacatgtgagtactctggcaac
tttggggaccgtgttacacatgatcaaagttgagtcctgaagctgaagga
ttaggtcccaaagccccggaagtctcaccactaccaccaccaccaccacc
actgatccctcacacacaaactgcctgtgtccctgacgttgttaccacca
tcactcctgggtcacggccagccccagaggctacagcagcccaagcgaca
gtgcctggaccccaccctccacgttccgacaggagactggaagtgttgat
catctccagcgggacccctacaggcctccccagaactctggtcccaggga
ggcctcgcagctctgggagtcgcctagcagcacttcccgcagaggccgcg
gccgggaggcggcgcgcgcgggttaaaggggcggggccggcgctgaccca
gcccgcggctctcggccgcccgcgtcctccctgcccgtaagagagctgcg
ccaccatgaggccaccgggtgctgccgtcgtgcgcggcgtggacctcagc
ggcacgacttcaagtagctggggagaaggggaaaggcgactcctaggccg
tctcccgggcgcttctctggctttcggaccgcgggcggggcgg
gaattccaatgttaactgacacaggaagtttgtgagaatgcatctgatat
atatacacacacgccatattattttggtgctaggaattgaacaaaggact
tggtgtgttgggcaggcacactaccactgaattacaccctcttaaacaag
atttgctagttgaattttgcagctagtgtgggatactcctgggtgttatt
tgtgggcttttggcaggaggaacctggtctggtgagctcttgtgaagagt
caaaattagtaggagtcactgcactgtcaagcaacgaggatgaggacttg
tatagccagggaactgagggccccaaatctattgtgggtgcaggagccca
gtttgagatccaccaactctttaccagacatgcattgctgcagttctccc
tgtgtcctcagtgtggcagcagagccccgatggcattatttcctggtggc
aagcagatcagccagtcctgcatatggatggaactaagtacccagagatc
acatgatctgcctgaggctgcccgctgcttctgttctacattgccagggt
atttgtggctatacttgcttaaaggcatacaacctgaagacaagcagatg
ccatcagggatccatgagctgtgaacagattgcctgcaatgttgacctca
ccccaccttagagagaagggtgcacctatcacatctcaagtggtagaatt
gctcaaggttctcttacagggcctgggctctcctgagttactaggggtgc
ttcttagtactgacttcctagggtatgctatatagctcctatgtttcctc
tcgaagctggacgcctatcacatttcccttctttattatcatatttaatt
ctttttttagatttattttatgtatgtgagtacactgttgctgtcttcag
acactctagaagagagcatcattctcataacaggttgtgtagacaccaca
tggtagctgggaattgaactcaggacctctggaagagcagtcagccctct
ttcactgagcatctttccagccccattcaatcttacaattttaaccaccc
aacttagaatcaattcttaatctcactgtcgggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60540541_60541647
seq2: B6Ng01-131C12.b_46_1138 (reverse)

seq1  CCGCCCCGCCCGCCGGTCCCGGAAGCGCAGAGGAAGCGGCCCGGGGAGAC  50
      |||||||||||| |||| ||| |||| |||| ||||||  || |||||||
seq2  CCGCCCCGCCCG-CGGT-CCGAAAGC-CAGA-GAAGCG--CCCGGGAGAC  44

seq1  GGCCTAGGGGTCGCCTTTCCCCTTCTCCCCCAGCTAACCTTGAAGTCGTT  100
      |||||||| ||||||||||||||||| |||||||||  |||||||||| |
seq2  GGCCTAGGAGTCGCCTTTCCCCTTCT-CCCCAGCTA--CTTGAAGTCG-T  90

seq1  GCCGCTGAGGTCCACGCCGCGCACGAACGGCAGCACCCCGGTGGCCTCCA  150
      ||||||||||||||||||||||||| ||||||||| ||||||||||| ||
seq2  GCCGCTGAGGTCCACGCCGCGCACG-ACGGCAGCA-CCCGGTGGCCT-CA  137

seq1  TGGTGGCGCAGCTCTCTTACGGGCAGGGAGGACGCGGGGCGGCCGAGAGC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGTGGCGCAGCTCTCTTACGGGCAGGGAGGACGC-GGGCGGCCGAGAGC  186

seq1  CGCGGGCTGGGTCAGCGCCGGCCCCGCCCCTTTAACCCGCGCGCGCCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGCTGGGTCAGCGCCGGCCCCGCCCCTTTAACCCGCGCGCGCCGCC  236

seq1  TCCCGGCCGCGGCCTCTGCGGGAAGTGCTGCTAGGCGACTCCCAGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCCGCGGCCTCTGCGGGAAGTGCTGCTAGGCGACTCCCAGAGCTG  286

seq1  CGAGGCCTCCCTGGGACCAGAGTTCTGGGGAGGCCTGTAGGGGTCCCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCTCCCTGGGACCAGAGTTCTGGGGAGGCCTGTAGGGGTCCCGCT  336

seq1  GGAGATGATCAACACTTCCAGTCTCCTGTCGGAACGTGGAGGGTGGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGATCAACACTTCCAGTCTCCTGTCGGAACGTGGAGGGTGGGGTC  386

seq1  CAGGCACTGTCGCTTGGGCTGCTGTAGCCTCTGGGGCTGGCCGTGACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGTCGCTTGGGCTGCTGTAGCCTCTGGGGCTGGCCGTGACCCA  436

seq1  GGAGTGATGGTGGTAACAACGTCAGGGACACAGGCAGTTTGTGTGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGATGGTGGTAACAACGTCAGGGACACAGGCAGTTTGTGTGTGAGG  486

seq1  GATCAGTGGTGGTGGTGGTGGTGGTAGTGGTGAGACTTCCGGGGCTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGTGGTGGTGGTGGTGGTAGTGGTGAGACTTCCGGGGCTTTGG  536

seq1  GACCTAATCCTTCAGCTTCAGGACTCAACTTTGATCATGTGTAACACGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAATCCTTCAGCTTCAGGACTCAACTTTGATCATGTGTAACACGGT  586

seq1  CCCCAAAGTTGCCAGAGTACTCACATGTGGCAGCTTAGAGAGCAGGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGTTGCCAGAGTACTCACATGTGGCAGCTTAGAGAGCAGGCTGC  636

seq1  ACAAACACTCACAATTCTCCCTTGGCATCAGGACTCCAGTCACCATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACTCACAATTCTCCCTTGGCATCAGGACTCCAGTCACCATTCTT  686

seq1  TATTGATTTGTTTTGTGCTCTAGATCAGTGTATATCTCCTGGGCCAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTTGTTTTGTGCTCTAGATCAGTGTATATCTCCTGGGCCAAGCT  736

seq1  CTTAGTGGCCATCTTGCCCTGGCCAGCATACAGTAGGTTTCCCATAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGCCATCTTGCCCTGGCCAGCATACAGTAGGTTTCCCATAAACA  786

seq1  GACACAGCTGTTCTATGGAAGTCCAGGGTCTGGCATCCCGGGTTTCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCTGTTCTATGGAAGTCCAGGGTCTGGCATCCCGGGTTTCAGGA  836

seq1  GGGAAGAGACTGATAGAGTTCCCACGACAGATGGCAGAGCTCTTTTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGACTGATAGAGTTCCCACGACAGATGGCAGAGCTCTTTTCCCA  886

seq1  TTATGTGTCAGGCAGGCCAAACGGAAATGGAACCACCAGGCACTCTAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTCAGGCAGGCCAAACGGAAATGGAACCACCAGGCACTCTAACA  936

seq1  GGGGCGAACTTGAGAGGCAGAATGTGGGCCTTTGGGCTAACTGCAGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGAACTTGAGAGGCAGAATGTGGGCCTTTGGGCTAACTGCAGTTTT  986

seq1  GTCTGCCTGGCCCACCAAGGGACCATGAGCTCAGACTCCACACTGAGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTGGCCCACCAAGGGACCATGAGCTCAGACTCCACACTGAGGCT  1036

seq1  CTCATTACAAGTACACACAAGGTCAGATGTGAGACTAAGTACGACTGCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACAAGTACACACAAGGTCAGATGTGAGACTAAGTACGACTGCTG  1086

seq1  AGAATTC  1107
      |||||||
seq2  AGAATTC  1093

seq1: chr11_60372588_60373683
seq2: B6Ng01-131C12.g_68_1154

seq1  GAATTCCAATGTTAACTGACACAGGAAGTTTGTGAGAATGCATCTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGTTAACTGACACAGGAAGTTTGTGAGAATGCATCTGATAT  50

seq1  ATATACACACACGCCATATTATTTTGGTGCTAGGAATTGAACAAAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACACGCCATATTATTTTGGTGCTAGGAATTGAACAAAGGACT  100

seq1  TGGTGTGTTGGGCAGGCACACTACCACTGAATTACACCCTCTTAAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTTGGGCAGGCACACTACCACTGAATTACACCCTCTTAAACAAG  150

seq1  ATTTGCTAGTTGAATTTTGCAGCTAGTGTGGGATACTCCTGGGTGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAGTTGAATTTTGCAGCTAGTGTGGGATACTCCTGGGTGTTATT  200

seq1  TGTGGGCTTTTGGCAGGAGGAACCTGGTCTGGTGAGCTCTTGTGAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTTTTGGCAGGAGGAACCTGGTCTGGTGAGCTCTTGTGAAGAGT  250

seq1  CAAAATTAGTAGGAGTCACTGCACTGTCAAGCAACGAGGATGAGGACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAGTAGGAGTCACTGCACTGTCAAGCAACGAGGATGAGGACTTG  300

seq1  TATAGCCAGGGAACTGAGGGCCCCAAATCTATTGTGGGTGCAGGAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAGGGAACTGAGGGCCCCAAATCTATTGTGGGTGCAGGAGCCCA  350

seq1  GTTTGAGATCCACCAACTCTTTACCAGACATGCATTGCTGCAGTTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGATCCACCAACTCTTTACCAGACATGCATTGCTGCAGTTCTCCC  400

seq1  TGTGTCCTCAGTGTGGCAGCAGAGCCCCGATGGCATTATTTCCTGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCAGTGTGGCAGCAGAGCCCCGATGGCATTATTTCCTGGTGGC  450

seq1  AAGCAGATCAGCCAGTCCTGCATATGGATGGAACTAAGTACCCAGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATCAGCCAGTCCTGCATATGGATGGAACTAAGTACCCAGAGATC  500

seq1  ACATGATCTGCCTGAGGCTGCCCGCTGCTTCTGTTCTACATTGCCAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCTGCCTGAGGCTGCCCGCTGCTTCTGTTCTACATTGCCAGGGT  550

seq1  ATTTGTGGCTATACTTGCTTAAAGGCATACAACCTGAAGACAAGCAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGCTATACTTGCTTAAAGGCATACAACCTGAAGACAAGCAGATG  600

seq1  CCATCAGGGATCCATGAGCTGTGAACAGATTGCCTGCAATGTTGACCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGGATCCATGAGCTGTGAACAGATTGCCTGCAATGTTGACCTCA  650

seq1  CCCCACCTTAGAGAGAAGGGTGCACCTATCACATCTCAAGTGGTAGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTTAGAGAGAAGGGTGCACCTATCACATCTCAAGTGGTAGAATT  700

seq1  GCTCAAGGTTCTCTTACAGGGCCTGGGCTCTCCTGAGTTACTAGGGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGTTCTCTTACAGGGCCTGGGCTCTCCTGAGTTACTAGGGGTGC  750

seq1  TTCTTAGTACTGACTTCCTAGGGTATGCTATATAGCTCCTATGTTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTACTGACTTCCTAGGGTATGCTATATAGCTCCTATGTTTCCTC  800

seq1  TCGAAGCTGGACGCCTATCACATTTCCCTTCTTTATTATCATATTTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGCTGGACGCCTATCACATTTCCCTTCTTTATTATCATATTTAATT  850

seq1  CTTTTTTTAAGATTTATTTTATGTATGTGAGTACACTGTTGCTGTCTTCA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTT-AGATTTATTTTATGTATGTGAGTACACTGTTGCTGTCTTCA  899

seq1  GACACTCTAGAAGAGAGCATCATTCTCATTACAGATGGTGTAAGACACCA  950
      ||||||||||||||||||||||||||||| |||| | |||| ||||||||
seq2  GACACTCTAGAAGAGAGCATCATTCTCATAACAGGTTGTGT-AGACACCA  948

seq1  CATGGTAGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGCACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATGGTAGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGCCCT  998

seq1  CTTTCCACTGAGCCATCTTTCCAGCCCCCATTCAATTCTTACAATTTTTA  1050
      |||| ||||||| ||||||||||| |||||||||| |||||||||||| |
seq2  CTTT-CACTGAG-CATCTTTCCAG-CCCCATTCAA-TCTTACAATTTTAA  1044

seq1  ACACCACACTTAGAGTCAAATCCTAATTCTACAACTGTCGGGAACA  1096
       ||||  ||||||| |||| || ||| |||   |||||||||||||
seq2  CCACCCAACTTAGAATCAATTCTTAA-TCT--CACTGTCGGGAACA  1087