BAC Information

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BAC

Clone NameB6Ng01-131E13
Chromosome11 (Build37)
Map Location 71,735,424 - 71,985,055
singlet/doubletdoublet
Overlap geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik
Upstream geneRabep1, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
Downstream geneTxnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131E13.bB6Ng01-131E13.g
ACCDH932379DH932380
length1,054789
definitionDH932379|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E13, 5' end.DH932380|Mus musculus domesticus DNA, BAC clone: B6Ng01-131E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,983,997 - 71,985,055)(71,735,424 - 71,736,208)
sequence
gaattcttgtttagaaattatttttaggggctggtgagatggctcagtgg
gtaagagcacccgactgctcttccaaaggtccagagttcaaatcccagca
accacatggtggctcacaaccatctgtaacaagatctgactccctcttct
ggtgtgtctgaagacagctacagtgtacttacatataataataaataaat
ctttaaaaaaaaaaaaaaagaaattatttttagtgaaaatttttttaata
ttaaactttttactggtagataattatgcattcacataaagttgtaataa
tacagaaaaatttggggtactcatctctcagctacctagtgtaacatctt
aacaaactgttgactacagccagaatagagcgagtgacacagtgagagca
tatgagttaactgacgttgacattaatatgttttataaaacctgtttggg
cccatgctgaggcatccctcctcccacctgaggtatgaccatgggtctag
tatagaatgaagtttatttggggacatggaaaggggggctgagaagggaa
gaaaggcaaagagagaggagggacagagaagagaaagaagagggaaaaca
tggagggagcggagtcagggagaaaggggtcagagaaaaggagagcatca
gagagcagagaggggaagagaggccaaacaatcccctgttttctaggtaa
ctgttgggcagagcctagaaggaatgctagcaatatttccagaacccacc
catcaccaccaccatccctcatgttgcacttttatagctgtacatagtct
ctgctgccccagctgccttttgactcagtagtgtggtagctaatccagag
gccagcttgcaggaatccgttctcttttcgctatggagatcagactctgg
tcatcaggcttggcaacaattacctttagctgctgagcctcttacttgcc
ctagattgactttttttccatataaatcttatggagcgtattctagtcac
acgtatataattgttcattcatctgctggggagcgaatctcatggtataa
ccac
gaattcagttcccaagctaaactgaatcccagctctgctgttttctagcc
aggtgagtggaggaaagttgtctggcctctgtgcctcctccataaaagga
gacctagcagcagagtcatgagtctacagttatgggtcaagattggaagt
ggttagggatgaggtgtggctccgttggtagagtgcttgcctagcatttg
tgacaccctgggtttgatcccaaagtaccacgtggatcaggcctggtggc
atatgcctgtaacaaggcagaaagatcagaagctgggctacatggcaagt
tcaaagctagcccgggctacatgagacttgtcccaaaataaataagtagc
aaaactctataaagggaaatgggaataaatgcttattccaaggatttgtg
gactgatattttaaatggtcttagacccactctgaagagagagatggcat
ctctagccagtgtctcaagctcgagtcccagttctgccaacacttgctag
acgtgactttggcgagtgacctcttacttcggttccccatttctataact
gcaaacagtggagttgccttatgtttaagtgatgtgaagatgagctgcat
gttagatagggatgaaatttgctggccagtggcagtaaagacctcagaag
tgctcaagctgaggcttaatgccagtttctgtaggtcccaggatctacgt
gtttttcctttgtcccctcaggaataaaattgcaaagagtcacataaagt
gaccttgggactcccactaggctattcttgggagcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71983997_71985055
seq2: B6Ng01-131E13.b_42_1095 (reverse)

seq1  GTGGTTAAACCATGAGATCCGACTCACCAGCAGATGAATGAACAAATAAT  50
      ||||||| |||||||||| || ||| ||||||||||||||||| ||| ||
seq2  GTGGTTATACCATGAGATTCG-CTCCCCAGCAGATGAATGAAC-AATTAT  48

seq1  ATACGTAGTGACTAGAATGACGCTCCAT-AGATTTATATTAGAAAAAAAG  99
      |||||| ||||||||||| ||||||||| ||||||||| | |||||||||
seq2  ATACGT-GTGACTAGAAT-ACGCTCCATAAGATTTATA-TGGAAAAAAAG  95

seq1  TCAATTCTAGGGCAAGTGAGATGGCTCAGCAGCTAAAGGTATTTGTTGCC  149
      |||| |||||||||||| ||| ||||||||||||||||||| ||||||||
seq2  TCAA-TCTAGGGCAAGTAAGA-GGCTCAGCAGCTAAAGGTAATTGTTGCC  143

seq1  AAGCCTGATGACCAGAGTCTGATCTCCATAGCTGAAAAGAGAACGGATTC  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGCCTGATGACCAGAGTCTGATCTCCATAGC-GAAAAGAGAACGGATTC  192

seq1  CTGCAAGCTGGCCTCTGGATTAGCTACCACACTTACTGAGTCAAAAGGCA  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCAAGCTGGCCTCTGGATTAGCTACCACAC-TACTGAGTCAAAAGGCA  241

seq1  GCTGGGGCAGCAGAGACTATGTACAGCTATAAAAGTGCAACATGAGGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCAGCAGAGACTATGTACAGCTATAAAAGTGCAACATGAGGGAT  291

seq1  GGTGGTGGTGATGGGTGGGTTCTGG-AATATTGCTAGCATTCCTTCTAGG  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGGTGGTGATGGGTGGGTTCTGGAAATATTGCTAGCATTCCTTCTAGG  341

seq1  CTCTGCCCAACAGTTACCTAG-AAACAGGGGATTGTTTGGCCTCTCTTCC  397
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTGCCCAACAGTTACCTAGAAAACAGGGGATTGTTTGGCCTCTCTTCC  391

seq1  CCTCTCTGCTCTCTGATGCTCTCC-TTTCTCTGACCCCTTTCTCCCTGAC  446
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTCTCTGCTCTCTGATGCTCTCCTTTTCTCTGACCCCTTTCTCCCTGAC  441

seq1  TCCGCTCCCTCCATGTTTTCCCTCTTCTTTCTCTTCTCTGTCCCTCCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCCCTCCATGTTTTCCCTCTTCTTTCTCTTCTCTGTCCCTCCTCT  491

seq1  CTCTTTGCCTTTCTTCCCTTCTCAGCCCCCCTTTCCATGTCCCCAAATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCCTTTCTTCCCTTCTCAGCCCCCCTTTCCATGTCCCCAAATAA  541

seq1  ACTTCATTCTATACTAGACCCATGGTCATACCTCAGGTGGGAGGAGGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCTATACTAGACCCATGGTCATACCTCAGGTGGGAGGAGGGAT  591

seq1  GCCTCAGCATGGGCCCAAACAGGTTTTATAAAACATATTAATGTCAACGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCATGGGCCCAAACAGGTTTTATAAAACATATTAATGTCAACGT  641

seq1  CAGTTAACTCATATGCTCTCACTGTGTCACTCGCTCTATTCTGGCTGTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAACTCATATGCTCTCACTGTGTCACTCGCTCTATTCTGGCTGTAG  691

seq1  TCAACAGTTTGTTAAGATGTTACACTAGGTAGCTGAGAGATGAGTACCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTTTGTTAAGATGTTACACTAGGTAGCTGAGAGATGAGTACCCC  741

seq1  AAATTTTTCTGTATTATTACAACTTTATGTGAATGCATAATTATCTACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCTGTATTATTACAACTTTATGTGAATGCATAATTATCTACCA  791

seq1  GTAAAAAGTTTAATATTAAAAAAATTTTCACTAAAAATAATTTCTTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGTTTAATATTAAAAAAATTTTCACTAAAAATAATTTCTTTTTT  841

seq1  TTTTTTTTTAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGT  891

seq1  CTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACAGATGGTTGTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACAGATGGTTGTGA  941

seq1  GCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGT  991

seq1  CGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTAAAAATAATTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTAAAAATAATTTC  1041

seq1  TAAACAAGAATTC  1059
      |||||||||||||
seq2  TAAACAAGAATTC  1054

seq1: chr11_71735424_71736208
seq2: B6Ng01-131E13.g_70_858

seq1  GAATTCAGTTCCCAAGCTAAACTGAATCCCAGCTCTGCTGTTTTCTAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAAGCTAAACTGAATCCCAGCTCTGCTGTTTTCTAGCC  50

seq1  AGGTGAGTGGAGGAAAGTTGTCTGGCCTCTGTGCCTCCTCCATAAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTGGAGGAAAGTTGTCTGGCCTCTGTGCCTCCTCCATAAAAGGA  100

seq1  GACCTAGCAGCAGAGTCATGAGTCTACAGTTATGGGTCAAGATTGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGCAGCAGAGTCATGAGTCTACAGTTATGGGTCAAGATTGGAAGT  150

seq1  GGTTAGGGATGAGGTGTGGCTCCGTTGGTAGAGTGCTTGCCTAGCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGATGAGGTGTGGCTCCGTTGGTAGAGTGCTTGCCTAGCATTTG  200

seq1  TGACACCCTGGGTTTGATCCCAAAGTACCACGTGGATCAGGCCTGGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCTGGGTTTGATCCCAAAGTACCACGTGGATCAGGCCTGGTGGC  250

seq1  ATATGCCTGTAACAAGGCAGAAAGATCAGAAGCTGGGCTACATGGCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTGTAACAAGGCAGAAAGATCAGAAGCTGGGCTACATGGCAAGT  300

seq1  TCAAAGCTAGCCCGGGCTACATGAGACTTGTCCCAAAATAAATAAGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTAGCCCGGGCTACATGAGACTTGTCCCAAAATAAATAAGTAGC  350

seq1  AAAACTCTATAAAGGGAAATGGGAATAAATGCTTATTCCAAGGATTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTATAAAGGGAAATGGGAATAAATGCTTATTCCAAGGATTTGTG  400

seq1  GACTGATATTTTAAATGGTCTTAGACCCACTCTGAAGAGAGAGATGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATATTTTAAATGGTCTTAGACCCACTCTGAAGAGAGAGATGGCAT  450

seq1  CTCTAGCCAGTGTCTCAAGCTCGAGTCCCAGTTCTGCCAACACTTGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCAGTGTCTCAAGCTCGAGTCCCAGTTCTGCCAACACTTGCTAG  500

seq1  ACGTGACTTTGGCGAGTGACCTCTTACTTCGGTTCCCCATTTCTATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACTTTGGCGAGTGACCTCTTACTTCGGTTCCCCATTTCTATAACT  550

seq1  GCAAACAGTGGAGTTGCCTTATGTTTAAGTGATGTGAAGATGAGCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGTGGAGTTGCCTTATGTTTAAGTGATGTGAAGATGAGCTGCAT  600

seq1  GTTAGATAGGGATGAAATTTGCTGGCCAGTGGCAGTAAAGACCTCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATAGGGATGAAATTTGCTGGCCAGTGGCAGTAAAGACCTCAGAAG  650

seq1  TGCTCAAGCTGAGGCTTAATGCCAG-TTCTGTAGGTCCCAGGATCTACGT  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCTCAAGCTGAGGCTTAATGCCAGTTTCTGTAGGTCCCAGGATCTACGT  700

seq1  GTTTT--CCTTGTCCCCTCAGGAATAAAATTGC-AAGAGTCACATAAAGT  746
      |||||  | |||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTTCCTTTGTCCCCTCAGGAATAAAATTGCAAAGAGTCACATAAAGT  750

seq1  GACCTTGGGACATCCCACTAGGCTATCCTT-GGAGCCCAG  785
      ||||||||||| |||||||||||||| ||| |||||||||
seq2  GACCTTGGGAC-TCCCACTAGGCTATTCTTGGGAGCCCAG  789