BAC Information

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BAC

Clone NameB6Ng01-131P16
Chromosome11 (Build37)
Map Location 100,073,415 - 100,224,532
singlet/doubletdoublet
Overlap geneKa11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835
Upstream geneSmarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14
Downstream geneJup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131P16.bB6Ng01-131P16.g
ACCDH932902DH932903
length308362
definitionDH932902|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P16, 5' end.DH932903|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,224,225 - 100,224,532)(100,073,415 - 100,073,782)
sequence
catcccgtgaagaggaggaagggtttatgctggtgctggattggagtggg
gggtggggcagggtgtgcagtggccatctgcctgggtgacaggatccaag
agatcgagcagccctaggcctgcggaagtcatcaagggaataggcaggag
gagatctcatccaatcccagtccttggtcattcagagagtgctggggggg
caacccctactggtgaccttttccagaattaggccaggagaggaggcagg
gagagggaactaaactaggtgtgggctacccaaggctggtaattatagaa
aatgtgcc
cctaccttcctatttctattttgctcaagaagagacctagaggctactca
caagtttgatatccccttcgtctttgactgtctaacttatggctccatca
gtggaggtaaagaacacttatcacccttttggctcaagaatatgatttgt
tctggactccctagagaggtacagcactccatgagaggcctgagggaagc
agaggtccttgccagagaaagaacattttggctccctcctctaaacccca
agttaaactgagtttcctagaaccctctcactacccagtctagaatattc
cccagctgacttcctttggacaaatactacatgtctatttggtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100224225_100224532
seq2: B6Ng01-131P16.b_54_361 (reverse)

seq1  GGCACATTTTCTCTAATTCCCAGCCTTGGGTAGCCCACACCTAGTTTAGT  50
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GGCACATTTTCTATAATTACCAGCCTTGGGTAGCCCACACCTAGTTTAGT  50

seq1  TCCCTCTCCCTGCCTCCTCTCCTGGCCTAATTCTGGAAAAGGTCACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCCTGCCTCCTCTCCTGGCCTAATTCTGGAAAAGGTCACCAGT  100

seq1  AGGGGTTGCCCCCCCAGCACTCTCTGAATGACCAAGGACTGGGATTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGCCCCCCCAGCACTCTCTGAATGACCAAGGACTGGGATTGGAT  150

seq1  GAGATCTCCTCCTGCCTATTCCCTTGATGACTTCCGCAGGCCTAGGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCCTCCTGCCTATTCCCTTGATGACTTCCGCAGGCCTAGGGCTG  200

seq1  CTCGATCTCTTGGATCCTGTCACCCAGGCAGATGGCCACTGCACACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCTCTTGGATCCTGTCACCCAGGCAGATGGCCACTGCACACCCTG  250

seq1  CCCCACCCCCCACTCCAATCCAGCACCAGCATAAACCCTTCCTCCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCACTCCAATCCAGCACCAGCATAAACCCTTCCTCCTCTTC  300

seq1  ACGGGATG  308
      ||||||||
seq2  ACGGGATG  308

seq1: chr11_100073415_100073782
seq2: B6Ng01-131P16.g_69_436

seq1  GAATTCCCTACCTTCCTATTTCTATTTTGCTCAAGAAGAGACCTAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTACCTTCCTATTTCTATTTTGCTCAAGAAGAGACCTAGAGGC  50

seq1  TACTCACAAGTTTGATATCCCCTTCGTCTTTGACTGTCTAACTTATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACAAGTTTGATATCCCCTTCGTCTTTGACTGTCTAACTTATGGCT  100

seq1  CCATCAGTGGAGGTAAAGAACACTTATCACCCTTTTGGCTCAAGAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTGGAGGTAAAGAACACTTATCACCCTTTTGGCTCAAGAATATG  150

seq1  ATTTGTTCTGGACTCCCTAGAGAGGTACAGCACTCCATGAGAGGCCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCTGGACTCCCTAGAGAGGTACAGCACTCCATGAGAGGCCTGAG  200

seq1  GGAAGCAGAGGTCCTTGCCAGAGAAAGAACATTTTGGCTCCCTCCTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGAGGTCCTTGCCAGAGAAAGAACATTTTGGCTCCCTCCTCTAA  250

seq1  ACCCCAAGTTAAACTGAGTTTCCTAGAACCCTCTCACTACCCAGTCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGTTAAACTGAGTTTCCTAGAACCCTCTCACTACCCAGTCTAGA  300

seq1  ATATTCCCCAGCTGACTTCCTTTGGACAAATACTACATGTCTATTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCCAGCTGACTTCCTTTGGACAAATACTACATGTCTATTTGGTG  350

seq1  TGTGTGTGTGTGTGTGTG  368
      ||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTG  368