BAC Information

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BAC

Clone NameB6Ng01-132K01
Chromosome11 (Build37)
Map Location 33,932,909 - 34,071,532
singlet/doubletdoublet
Overlap geneLcp2
Upstream geneLOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1
Downstream geneFoxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976, Slit3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132K01.bB6Ng01-132K01.g
ACCDH933383DH933384
length1,118861
definitionDH933383|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K01, 5' end.DH933384|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,932,909 - 33,934,033)(34,070,673 - 34,071,532)
sequence
gaattctttataaaccacccattaatggaaaatggactatagtgccctgt
tatggggtctctctgctcatgaagacagatttgatgtttctgctatcagt
ccctgcataggtaccagaacaaactgcacgcccaccaccagagctcagca
gcacccatagctgagcaaggatgatgacctagttgactttccacattcta
tatcccgcatcaccttcctgtctggagtcagtctttgcatctcaccacac
agactgctggaggagaaaaaccaggttaggcatcctagcatcttttcctg
gacctgatgcagtgactcttcagaccccccaattggtcaggtttgcagaa
aaagagaaagttcagccaaacaggacagcacattctgggtagaaggagga
gggcaggaaagaatagtaagcatagggaaagggggagagttgagcagagg
gctcacagagagcttgggataaagaagaaatgtctgtgaatactgaggag
cagggcagagtacaggtgaaggctgggaggcctggcttccagcagggctc
cgctgctcattcttgtggctctaggccagtggtttctctctctctgagct
ctctctgagcacctgctctcttgcctcccctacgctattcattcgttggc
tcattcattctaaaatatttcttgaatatctcctttgtagtattgtagga
tttggggtttcagcaaggatcagaggggacattaaccacattatcatatc
atcgcatcacatcatatcatatcggcccttatagggacaatgaataaaac
tagtaaaatatattataaattagtttgggataaggagaaaaaaatagacc
agaaaggaggttaagagccaattctgaacgggcgattataacagttcatt
ttaattatcaacttgatatatctaatcacccgggaagagagtcttagtga
ggagctgtctaatcaagttagcctctgagctatttgtgggaaattacctg
atctatagctgagaatgggaagacccatcctttcaatccctgttctgggg
ccactgacagttataccaggagaagctgggtgaggagcctgaccacacac
catccgtgctttctcttg
gaattccttggtagccaggcactcattaccaaaggatcaaagtgccaaag
gaagctactcatttgaggctaagacttggatttttcattttcataattgg
tccttgaatttgcacaatagaaggggtctattggacaaagtgtctctatg
gcagctcagtggcccatgggggagggtggggccagtgcctgcaagaccta
gatggcttcccagaaagcttctgaaggccatttgtccatctgctgcagct
ggtcagcacctaggccaaaaggagaggtctgtcccaagcactaaaaactg
tcagcagagccaaaggcttgttgtctccttcagactgtcccagctatctg
cccagctatctggaagctcttgggtgatgttaccaaggacatttagtaat
atctggagatatttgtgcttggcacactgggaactgaaagcacttgcctt
ccctgacatggaacacttgctttccccactttcacaggttgaaatcctgg
tccccaatgtgctagtattgggaagtaggacctttgggggtcagaaaggg
ggtcggtgttcatataaaaggggccacagaaggcttttcctctccacctt
gtgaaggatccagtgaggaggtatcagtctgtggatgggttgcttccagg
cttccagccctcatgataaagaaccgtctgcctcaagtgtcaagtctacc
atagcaagggcgagaagccagttctggcccatcgcacaccctgctgtggt
tgcctcttctagctgtagagatgggggtgatcagaggcaggcaatcaccc
agacgtgtgtcctttaagaaaagaagaagggtaataattgagggatgcag
gttatgaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_33932909_33934033
seq2: B6Ng01-132K01.b_43_1160

seq1  GAATTCTTTATAAACCACCCATTAATGGAAAATGGACTATAGTGCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAAACCACCCATTAATGGAAAATGGACTATAGTGCCCTGT  50

seq1  TATGGGGTCTCTCTGCTCATGAAGACAGATTTGATGTTTCTGCTATCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGTCTCTCTGCTCATGAAGACAGATTTGATGTTTCTGCTATCAGT  100

seq1  CCCTGCATAGGTACCAGAACAAACTGCACGCCCACCACCAGAGCTCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATAGGTACCAGAACAAACTGCACGCCCACCACCAGAGCTCAGCA  150

seq1  GCACCCATAGCTGAGCAAGGATGATGACCTAGTTGACTTTCCACATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATAGCTGAGCAAGGATGATGACCTAGTTGACTTTCCACATTCTA  200

seq1  TATCCCGCATCACCTTCCTGTCTGGAGTCAGTCTTTGCATCTCACCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCGCATCACCTTCCTGTCTGGAGTCAGTCTTTGCATCTCACCACAC  250

seq1  AGACTGCTGGAGGAGAAAAACCAGGTTAGGCATCCTAGCATCTTTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGGAGGAGAAAAACCAGGTTAGGCATCCTAGCATCTTTTCCTG  300

seq1  GACCTGATGCAGTGACTCTTCAGACCCCCCAATTGGTCAGGTTTGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATGCAGTGACTCTTCAGACCCCCCAATTGGTCAGGTTTGCAGAA  350

seq1  AAAGAGAAAGTTCAGCCAAACAGGACAGCACATTCTGGGTAGAAGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAGTTCAGCCAAACAGGACAGCACATTCTGGGTAGAAGGAGGA  400

seq1  GGGCAGGAAAGAATAGTAAGCATAGGGAAAGGGGGAGAGTTGAGCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAAGAATAGTAAGCATAGGGAAAGGGGGAGAGTTGAGCAGAGG  450

seq1  GCTCACAGAGAGCTTGGGATAAAGAAGAAATGTCTGTGAATACTGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGAGAGCTTGGGATAAAGAAGAAATGTCTGTGAATACTGAGGAG  500

seq1  CAGGGCAGAGTACAGGTGAAGGCTGGGAGGCCTGGCTTCCAGCAGGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGAGTACAGGTGAAGGCTGGGAGGCCTGGCTTCCAGCAGGGCTC  550

seq1  CGCTGCTCATTCTTGTGGCTCTAGGCCAGTGGTTTCTCTCTCTCTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTCATTCTTGTGGCTCTAGGCCAGTGGTTTCTCTCTCTCTGAGCT  600

seq1  CTCTCTGAGCACCTGCTCTCTTGCCTCCCCTACGCTATTCATTCGTTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGCACCTGCTCTCTTGCCTCCCCTACGCTATTCATTCGTTGGC  650

seq1  TCATTCATTCTAAAATATTTCTTGAATATCTCCTTTGTAGTATTGTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCTAAAATATTTCTTGAATATCTCCTTTGTAGTATTGTAGGA  700

seq1  TTTGGGGTTTCAGCAAGGATCAGAGGGGACATTAACCACATTATCATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTTCAGCAAGGATCAGAGGGGACATTAACCACATTATCATATC  750

seq1  ATCGCATCACATCATATCATATCGGCCCTTATAGGGACAATGAATAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATCACATCATATCATATCGGCCCTTATAGGGACAATGAATAAAAC  800

seq1  TAGTAAAATATATTATAAATTAGTTTGGGATAAGGAGAAAAAAATAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATATATTATAAATTAGTTTGGGATAAGGAGAAAAAAATAGACC  850

seq1  AAGAAAGGAGGTTAAGGAGCCAATTCTGAACGGGCGATTATAACAGTTCA  900
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -AGAAAGGAGGTTAA-GAGCCAATTCTGAACGGGCGATTATAACAGTTCA  898

seq1  TTTTAATTATCAACTTGATATAATCTAATCACCCGGGAAGAGAGTCTTAG  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTAATTATCAACTTGATAT-ATCTAATCACCCGGGAAGAGAGTCTTAG  947

seq1  TGAGGAGCTGTCTAAATCAAGTTAGCCTCTGAGCTTATTTGTGGGAAATT  1000
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TGAGGAGCTGTCT-AATCAAGTTAGCCTCTGAGC-TATTTGTGGGAAATT  995

seq1  ACCTTGATCTATTAGCTGAG-ATGGGAAGACCCATCCTTCCATTCCCTGT  1049
      ||| ||||||| |||||||| |||||||||||||||||| || |||||||
seq2  ACC-TGATCTA-TAGCTGAGAATGGGAAGACCCATCCTTTCAATCCCTGT  1043

seq1  TCTTGGGGCACTGGACAGTATAACAAGGAGAAAGCTGGGTGA-GAG-CTG  1097
      ||| ||| |||| ||||||   || ||||| ||||||||||| ||| |||
seq2  TCTGGGGCCACT-GACAGTTATACCAGGAG-AAGCTGGGTGAGGAGCCTG  1091

seq1  AGCACACACCCATTCGTGCTTTCTCTTG  1125
      | |||||| |||| ||||||||||||||
seq2  ACCACACA-CCATCCGTGCTTTCTCTTG  1118

seq1: chr11_34070673_34071532
seq2: B6Ng01-132K01.g_67_927 (reverse)

seq1  CACCTCATAACCTGCATCCCTC-ATTATTACCCTTCTTCTTTTCTTAAAG  49
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACCTCATAACCTGCATCCCTCAATTATTACCCTTCTTCTTTTCTTAAAG  50

seq1  GACACACGTCTGGGTGATTGCCTGCCTCTGATCACCCCCATCTCTACAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACGTCTGGGTGATTGCCTGCCTCTGATCACCCCCATCTCTACAGC  100

seq1  TAGAAGAGGCAACCACAGCAGGGTGTGCGATGGGCCAGAACTGGCTTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGGCAACCACAGCAGGGTGTGCGATGGGCCAGAACTGGCTTCTC  150

seq1  GCCCTTGCTATGGTAGACTTGACACTTGAGGCAGACGGTTCTTTATCATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCTATGGTAGACTTGACACTTGAGGCAGACGGTTCTTTATCATG  200

seq1  AGGGCTGGAAGCCTGGAAGCAACCCATCCACAGACTGATACCTCCTCACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAAGCCTGGAAGCAACCCATCCACAGACTGATACCTCCTCACT  250

seq1  GGATCCTTCACAAGGTGGAGAGGAAAAGCCTTCTGTGGCCCCTTTTATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTCACAAGGTGGAGAGGAAAAGCCTTCTGTGGCCCCTTTTATAT  300

seq1  GAACACCGACCCCCTTTCTGACCCCCAAAGGTCCTACTTCCCAATACTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCGACCCCCTTTCTGACCCCCAAAGGTCCTACTTCCCAATACTAG  350

seq1  CACATTGGGGACCAGGATTTCAACCTGTGAAAGTGGGGAAAGCAAGTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGGACCAGGATTTCAACCTGTGAAAGTGGGGAAAGCAAGTGTT  400

seq1  CCATGTCAGGGAAGGCAAGTGCTTTCAGTTCCCAGTGTGCCAAGCACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCAGGGAAGGCAAGTGCTTTCAGTTCCCAGTGTGCCAAGCACAAA  450

seq1  TATCTCCAGATATTACTAAATGTCCTTGGTAACATCACCCAAGAGCTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAGATATTACTAAATGTCCTTGGTAACATCACCCAAGAGCTTCC  500

seq1  AGATAGCTGGGCAGATAGCTGGGACAGTCTGAAGGAGACAACAAGCCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTGGGCAGATAGCTGGGACAGTCTGAAGGAGACAACAAGCCTTT  550

seq1  GGCTCTGCTGACAGTTTTTAGTGCTTGGGACAGACCTCTCCTTTTGGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCTGACAGTTTTTAGTGCTTGGGACAGACCTCTCCTTTTGGCCT  600

seq1  AGGTGCTGACCAGCTGCAGCAGATGGACAAATGGCCTTCAGAAGCTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGACCAGCTGCAGCAGATGGACAAATGGCCTTCAGAAGCTTTCT  650

seq1  GGGAAGCCATCTAGGTCTTGCAGGCACTGGCCCCACCCTCCCCCATGGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCATCTAGGTCTTGCAGGCACTGGCCCCACCCTCCCCCATGGGC  700

seq1  CACTGAGCTGCCATAGAGACACTTTGTCCAATAGACCCCTTCTATTGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCTGCCATAGAGACACTTTGTCCAATAGACCCCTTCTATTGTGC  750

seq1  AAATTCAAGGACCAATTATGAAAATGAAAAATCCAAGTCTTAGCCTCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGGACCAATTATGAAAATGAAAAATCCAAGTCTTAGCCTCAAA  800

seq1  TGAGTAGCTTCCTTTGGCACTTTGATCCTTTGGTAATGAGTGCCTGGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGCTTCCTTTGGCACTTTGATCCTTTGGTAATGAGTGCCTGGCTA  850

seq1  CCAAGGAATTC  860
      |||||||||||
seq2  CCAAGGAATTC  861