BAC Information

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BAC

Clone NameB6Ng01-133J20
Chromosome11 (Build37)
Map Location 41,949,024 - 41,950,165
singlet/doubletsinglet
Overlap geneGabra1
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
Downstream geneGabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133J20.bB6Ng01-133J20.g
ACCDH934116DH934117
length1,1391,180
definitionDH934116|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J20, 5' end.DH934117|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttaccagtgtactaaatattcggtccagtccttggaatagct
caaggctgctctgtggtgatctctcactcttcctggcagaattgctttga
actatttttaaatgtttgcattttttttctaaagaaatctcacagcatta
aactcagtatatggtaccaatacagtgtgttccatatggtagttcaaaca
acaggaaagataacattatccacactctatctcataaaaatatctaaata
aaatagaactaacttacaatgtgcttttactgtgaatataggtcgcttaa
atccctacagaatagggaaaatgaggcaacatagaacaaagagaagatca
tggacacttggatcaaacaagttttaccccatagccatttgattttaagc
aaagtatgtcaattctatatgcaagtagatgtgcatgttattttgcacag
gaagttttatgtaacttgctatccacttattcatacacatgctgcttcca
ggaaatgggtgaattcttttgaacgagaagtagtatatgaaaaaagctat
aaatgtggaaaattatcattccccaagttgttacttacctttctgcttcc
aaggactaattgaatttcatatttctgcatgtgggacaaagactattaaa
cagctctataaatatctctgagtaccacaggtattagatatctaagatat
atatgtcaagagtagggtgcattgaataatatcagtccctatcctatata
ggatatgcatacaagatggctatttaatgaagtttactgttttagtaacg
tattctgaattaggagagtactctatctcttctgaatgaccctaaatact
gctgtgcaaagtatattgaggccatattctgactccaccatcacaatcaa
aatagggtgaatctggatgtgaatccagatgtgaatccagatgtgaaccc
agatgcttttggttctcctttgatcaaggaacaagcacaggtctgctgta
ataaaattttctgtagtgaccaatatattacttaatttctctcctttagg
agtgacgactgttctgactatgacaacttgagtttcagtgcaggaaattc
cctcccggaagttggcttaatgcacagcctatggactgg
gaattcttgatgtggaataagtacttatatgatttggaaggaagagggtg
aagaatggcttttaaatttgaaagaaccacattagcgtttgctacatttc
tgtctcagcacagagacaaccatttgctgactgggagctatctctctagg
aagacttgatgcccactttaatgcatttgcagcctacttgaaatctggtt
cttcaataatggaagaattgaggttcctgtcttcctttcttcagtctttc
actcagaaaatggaaaatcttcttcttttctagcatttgtgcatgctgca
gggtctctatgtgttaacgtagctcctttcaccaacctatttttcaacag
catatagaattctgtttcaagaggttaatcatgcaacatttgtgaaaatc
cgtaggttttggcctgagacaccagagaaaagaaaatagctgctctcatt
tatattttactgtgtcatattttcctctaatatgaaagatgaaatcaatg
ctgcctaacacttggatcttgaccaaagcaaaaatccctttattctgatg
tttgcacatatcagcatctgtggacaatttttatttttaatttgtctcac
tgttaatctcaacaagtatataggattcatcttttacaataggaaagtag
attgaggctgggctatagatgagtatcttattagcaaattctgggcctga
ggttttgtccatacacacacgtgtgagtgtgtgtgtgtgtgtgtgtgtct
gcgtgtgagtgtctataagatactcatctatagcccagcctcaatctact
tacctattgaagaagatgaatcctatatactagttgagatgcacagtgag
acaaaataaaaataaaaatctcccacagatgctgaatgtgcaacaccaga
ataaagggatttttctttggtcaaatccagtgtaggcagcattgaatcat
ctttctatttgaggaaaataggaccgttaaatacatggagcagctatttc
ttttctgggtccaggcaaaccttcgtattcccaatgtgcagaatacctct
gaatacgattcatttgccgttgaaatacttgtgcagggaccacgctaccc
aggtgcacctgcgacggtcccaaatgctgaagagagattcacattctccg
gttaaagcgcgaagaagaacggaactaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41949024_41950165
seq2: B6Ng01-133J20.b_48_1186 (reverse)

seq1  CCAGTCCATA-GCTGTTGCA-TAAGCCACCTT-CGGGAGGGAATTTCTGG  47
      |||||||||| |||| |||| ||||||| ||| ||||||||||||||  |
seq2  CCAGTCCATAGGCTG-TGCATTAAGCCAACTTCCGGGAGGGAATTTCCTG  49

seq1  CACTGATACTCAAGGTTGTCATAGTCAGAACAGTCGTCACTCCTAAAAGG  97
      |||||| |||||| |||||||||||||||||||||||||||||| |||||
seq2  CACTGAAACTCAA-GTTGTCATAGTCAGAACAGTCGTCACTCCT-AAAGG  97

seq1  AGAGAAATTAAGTAAATATATTGGTTCACTACAGAAAATTTTATTACAGC  147
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  AGAGAAATTAAGT-AATATATTGG-TCACTACAGAAAATTTTATTACAGC  145

seq1  AGACCTGTGCTTGTTCCCTTGATCAAAGGGGAACCAAAAGCATCTGGGTT  197
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  AGACCTGTGCTTGTT-CCTTGATCAAAGGAGAACCAAAAGCATCTGGGTT  194

seq1  CACATCTGGATTCACATCTGGATTCACATCCAGATTCACCCTATTTTGAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGGATTCACATCTGGATTCACATCCAGATTCACCCTATTTTGAT  244

seq1  TGTGATGGTGGAGTCAGAATATGGCCTCAATATACTTTGCACAGCAGTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGTGGAGTCAGAATATGGCCTCAATATACTTTGCACAGCAGTAT  294

seq1  TTAGGGTCATTCAGAAGAGATAGAGTACTCTCCTAATTCAGAATACGTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCATTCAGAAGAGATAGAGTACTCTCCTAATTCAGAATACGTTA  344

seq1  CTAAAACAGTAAACTTCATTAAATAGCCATCTTGTATGCATATCCTATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGTAAACTTCATTAAATAGCCATCTTGTATGCATATCCTATAT  394

seq1  AGGATAGGGACTGATATTATTCAATGCACCCTACTCTTGACATATATATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGGACTGATATTATTCAATGCACCCTACTCTTGACATATATATC  444

seq1  TTAGATATCTAATACCTGTGGTACTCAGAGATATTTATAGAGCTGTTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATCTAATACCTGTGGTACTCAGAGATATTTATAGAGCTGTTTAA  494

seq1  TAGTCTTTGTCCCACATGCAGAAATATGAAATTCAATTAGTCCTTGGAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTTGTCCCACATGCAGAAATATGAAATTCAATTAGTCCTTGGAAG  544

seq1  CAGAAAGGTAAGTAACAACTTGGGGAATGATAATTTTCCACATTTATAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTAAGTAACAACTTGGGGAATGATAATTTTCCACATTTATAGC  594

seq1  TTTTTTCATATACTACTTCTCGTTCAAAAGAATTCACCCATTTCCTGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATATACTACTTCTCGTTCAAAAGAATTCACCCATTTCCTGGAA  644

seq1  GCAGCATGTGTATGAATAAGTGGATAGCAAGTTACATAAAACTTCCTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATGTGTATGAATAAGTGGATAGCAAGTTACATAAAACTTCCTGTG  694

seq1  CAAAATAACATGCACATCTACTTGCATATAGAATTGACATACTTTGCTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACATGCACATCTACTTGCATATAGAATTGACATACTTTGCTTA  744

seq1  AAATCAAATGGCTATGGGGTAAAACTTGTTTGATCCAAGTGTCCATGATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATGGCTATGGGGTAAAACTTGTTTGATCCAAGTGTCCATGATC  794

seq1  TTCTCTTTGTTCTATGTTGCCTCATTTTCCCTATTCTGTAGGGATTTAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGTTCTATGTTGCCTCATTTTCCCTATTCTGTAGGGATTTAAG  844

seq1  CGACCTATATTCACAGTAAAAGCACATTGTAAGTTAGTTCTATTTTATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTATATTCACAGTAAAAGCACATTGTAAGTTAGTTCTATTTTATTT  894

seq1  AGATATTTTTATGAGATAGAGTGTGGATAATGTTATCTTTCCTGTTGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTTATGAGATAGAGTGTGGATAATGTTATCTTTCCTGTTGTTT  944

seq1  GAACTACCATATGGAACACACTGTATTGGTACCATATACTGAGTTTAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCATATGGAACACACTGTATTGGTACCATATACTGAGTTTAATG  994

seq1  CTGTGAGATTTCTTTAGAAAAAAAATGCAAACATTTAAAAATAGTTCAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGATTTCTTTAGAAAAAAAATGCAAACATTTAAAAATAGTTCAAA  1044

seq1  GCAATTCTGCCAGGAAGAGTGAGAGATCACCACAGAGCAGCCTTGAGCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTGCCAGGAAGAGTGAGAGATCACCACAGAGCAGCCTTGAGCTA  1094

seq1  TTCCAAGGACTGGACCGAATATTTAGTACACTGGTAAGTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGACTGGACCGAATATTTAGTACACTGGTAAGTGAATTC  1139