BAC Information

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BAC

Clone NameB6Ng01-134F14
Chromosome11 (Build37)
Map Location 114,856,510 - 115,028,994
singlet/doubletdoublet
Overlap geneCd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1
Upstream geneSdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik
Downstream geneNat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134F14.bB6Ng01-134F14.g
ACCDH934669DH934670
length1,131543
definitionDH934669|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F14, 5' end.DH934670|Mus musculus domesticus DNA, BAC clone: B6Ng01-134F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,027,832 - 115,028,994)(114,856,510 - 114,857,058)
sequence
gaattccatctctgggtggactggttgcataaacaagcccaggtgtgctg
gtcggggatgaactgggataaaggtcctttatagctactatatattcact
cattaattcaaataccatttattgaacacctccctagagtaggttcagag
ctgagttggtaacagcgattggaataacccaaggctgtgccccggggctt
cccatgtagtagaggccatcagcacagtgtgtacagggccacagggatac
gcagcttgcctgaggggatttgaatctttgctgtggccgagagtaagagg
gtgggtagcaaatttgtggaggtctgtggcactacatagaactattattg
ttcttattaaattttgatgcagaatcccactctgtccccagtctctggct
tgaactggcaatcctcctgcctttacctcccatgtgctgggtttataggc
ctgagccaccacacccagctcatcacataaacactaaacaacagtgatct
ttgagcgcttctgagggctgggcttggccagctgtacctgccgaggtagg
gagaaatcatcactgtgaactatttattacttcaaatgccaacaatcaac
atttactgagcacttacttagtgccaggtattgagtgacttacacacaca
tccttatgtaatcctaataacctcatgaggtcaccaccatcatccccaac
ttacacaataggaaacagaggcttagggagatgaagaaactgggctccag
gaaggccagccaggacagctgagctggctcagagggctgcccagggccca
ctttggacaagctcaaggatttaggccttgtccatgtctggcactgagca
gggaaaacaataagaaggaaggtgaaagggctggcgagatagcatagatg
acaaagctcttgcttgcaagcatgaggacctgagttcaatcccagaccaa
ccccttcaccaaaacaaaaacaaccaccaacaacacataaacaaacaaca
aaacaaaagaccccccagaggagtttaggttaaatctagcctgggaagtg
aaggcagagaatctctaagctaactgctaacagcctagccgaattgtaat
tcagcctgggcaccttacttccagcactcag
tatcccaggtgcttcctgttagaccttctgtgtttgtattcctctgtttt
gtgtaagaatccagtaacctctttgtaccttgctggtgtgtcacccaact
tccctattttcttctgtataaaaagtttgatgctcgatttgacaaattac
attcagattctacacaacctctcctgtgtgcatctgtcattccatccaac
gttttgcccacctgccccagagaccctttccacgcagacaaagggatcca
gagggtctgcggcatagcaggatgcaggttagaacatcaacatatcagtt
gtgtgaatctcagagacacaatgttatatgatgaagtcatgaggcttaga
aatgaagcgtgttactgggcatggtagaacatgcctatattcccagaacc
ggggaggcagaggcaggaggattggggttggaaactagcctgggctatat
agtgagacactgttaactaaagaaaaaggaagaaaggaaggaagggagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115027832_115028994
seq2: B6Ng01-134F14.b_45_1175 (reverse)

seq1  CTGAGTGCTGGAAGTAAAGGTGCACCAGGCTGGAATTTACAAATCCGGCT  50
      ||||||||||||||| ||||||| ||||||||  | |||| ||| |||||
seq2  CTGAGTGCTGGAAGT-AAGGTGC-CCAGGCTG--AATTAC-AATTCGGCT  45

seq1  AAGCTGGTTGGGCAGTAAGCCTTAGAGATTCTCCTGCCTCCACTTTCCCA  100
      | ||||  |  ||||| || |||||||||||| |||||| ||| ||||||
seq2  AGGCTG--TTAGCAGTTAG-CTTAGAGATTCT-CTGCCTTCAC-TTCCCA  90

seq1  GGGCTAGGATTATAAACCTAAAACTCCTCTGTGGGGTGTCTTTTTGTTTT  150
       ||||||  ||   ||||| ||||||||||| |||||    |||||||||
seq2  -GGCTAGATTT---AACCT-AAACTCCTCTGGGGGGT---CTTTTGTTTT  132

seq1  TGTTTGTTTGTTTTATTGTTGTTTGTTTGGTTGGTTGTTTTTTTGTTTTT  200
         ||||||||||   |||||||      | |||||||||||    ||||
seq2  --GTTGTTTGTTTATGTGTTGTT------GGTGGTTGTTTTT---GTTTT  171

seq1  GGTGAAGGGGTTGGTCTGGGGATTGAACTCAGGTCCTCATGCTTGCAAGC  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTGAAGGGGTTGGTCT-GGGATTGAACTCAGGTCCTCATGCTTGCAAGC  220

seq1  AAGAGCTTTGTCATCTATGCTATCTCGCCAGCCC-TTCACCTGCCTTCTT  299
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  AAGAGCTTTGTCATCTATGCTATCTCGCCAGCCCTTTCACCTTCCTTCTT  270

seq1  ATTGTTTTTCCCTGCTCAGTGCCAGACATGGAACAAGGCCTAAATCCTTG  349
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTG-TTTTCCCTGCTCAGTGCCAGACATGG-ACAAGGCCTAAATCCTTG  318

seq1  AGCTTGTCCAAAGTGGGCCCTGGGCAGCCCTCCTGAGCCAGCTCAGCTGT  399
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTTGTCCAAAGTGGGCCCTGGGCAGCCCT-CTGAGCCAGCTCAGCTGT  367

seq1  CCTGGCTGGCCTTCCTGGAGCCCAGTTTCTTCATCTCCCTAAGCCTCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGCCTTCCTGGAGCCCAGTTTCTTCATCTCCCTAAGCCTCTGT  417

seq1  TTCCTATTGTGTAAGTTGGGGATGATGGTGGTGACCTCATGAGGTTATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGTGTAAGTTGGGGATGATGGTGGTGACCTCATGAGGTTATTA  467

seq1  GGATTACATAAGGATGTGTGTGTAAGTCACTCAATACCTGGCACTAAGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACATAAGGATGTGTGTGTAAGTCACTCAATACCTGGCACTAAGTA  517

seq1  AGTGCTCAGTAAATGTTGATTGTTGGCATTTGAAGTAATAAATAGTTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGTAAATGTTGATTGTTGGCATTTGAAGTAATAAATAGTTCAC  567

seq1  AGTGATGATTTCTCCCTACCTCGGCAGGTACAGCTGGCCAAGCCCAGCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGATTTCTCCCTACCTCGGCAGGTACAGCTGGCCAAGCCCAGCCC  617

seq1  TCAGAAGCGCTCAAAGATCACTGTTGTTTAGTGTTTATGTGATGAGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCGCTCAAAGATCACTGTTGTTTAGTGTTTATGTGATGAGCTGG  667

seq1  GTGTGGTGGCTCAGGCCTATAAACCCAGCACATGGGAGGTAAAGGCAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGGCTCAGGCCTATAAACCCAGCACATGGGAGGTAAAGGCAGGA  717

seq1  GGATTGCCAGTTCAAGCCAGAGACTGGGGACAGAGTGGGATTCTGCATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCCAGTTCAAGCCAGAGACTGGGGACAGAGTGGGATTCTGCATCA  767

seq1  AAATTTAATAAGAACAATAATAGTTCTATGTAGTGCCACAGACCTCCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATAAGAACAATAATAGTTCTATGTAGTGCCACAGACCTCCACA  817

seq1  AATTTGCTACCCACCCTCTTACTCTCGGCCACAGCAAAGATTCAAATCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTACCCACCCTCTTACTCTCGGCCACAGCAAAGATTCAAATCCC  867

seq1  CTCAGGCAAGCTGCGTATCCCTGTGGCCCTGTACACACTGTGCTGATGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAAGCTGCGTATCCCTGTGGCCCTGTACACACTGTGCTGATGGC  917

seq1  CTCTACTACATGGGAAGCCCCGGGGCACAGCCTTGGGTTATTCCAATCGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTACATGGGAAGCCCCGGGGCACAGCCTTGGGTTATTCCAATCGC  967

seq1  TGTTACCAACTCAGCTCTGAACCTACTCTAGGGAGGTGTTCAATAAATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAACTCAGCTCTGAACCTACTCTAGGGAGGTGTTCAATAAATGG  1017

seq1  TATTTGAATTAATGAGTGAATATATAGTAGCTATAAAGGACCTTTATCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATTAATGAGTGAATATATAGTAGCTATAAAGGACCTTTATCCC  1067

seq1  AGTTCATCCCCGACCAGCACACCTGGGCTTGTTTATGCAACCAGTCCACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCCCCGACCAGCACACCTGGGCTTGTTTATGCAACCAGTCCACC  1117

seq1  CAGAGATGGAATTC  1163
      ||||||||||||||
seq2  CAGAGATGGAATTC  1131

seq1: chr11_114856510_114857058
seq2: B6Ng01-134F14.g_67_615

seq1  GAATTCTATCCCAGGTGCTTCCTGTTAGACCTTCTGTGTTTGTATTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCAGGTGCTTCCTGTTAGACCTTCTGTGTTTGTATTCCTC  50

seq1  TGTTTTGTGTAAGAATCCAGTAACCTCTTTGTACCTTGCTGGTGTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTAAGAATCCAGTAACCTCTTTGTACCTTGCTGGTGTGTCAC  100

seq1  CCAACTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGCTCGATTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGCTCGATTTGACA  150

seq1  AATTACATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCATTCCA  200

seq1  TCCAACGTTTTGCCCACCTGCCCCAGAGACCCTTTCCACGCAGACAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGTTTTGCCCACCTGCCCCAGAGACCCTTTCCACGCAGACAAAGG  250

seq1  GATCCAGAGGGTCTGCGGCATAGCAGGATGCAGGTTAGAACATCAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGAGGGTCTGCGGCATAGCAGGATGCAGGTTAGAACATCAACATA  300

seq1  TCAGTTGTGTGAATCTCAGAGACACAATGTTATATGATGAAGTCATGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGTGAATCTCAGAGACACAATGTTATATGATGAAGTCATGAGG  350

seq1  CTTAGAAATGAAGCGTGTTACTGGGCATGGTAGAACATGCCTATATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATGAAGCGTGTTACTGGGCATGGTAGAACATGCCTATATTCCC  400

seq1  AGAACCGGGGAGGCAGAGGCAGGAGGATTGGGGTTGGAAACTAGCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCGGGGAGGCAGAGGCAGGAGGATTGGGGTTGGAAACTAGCCTGGG  450

seq1  CTATATAGTGAGACACTGTTAACTAAAGAAAAAGGAAGAAAGGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGTGAGACACTGTTAACTAAAGAAAAAGGAAGAAAGGAAGGAAG  500

seq1  GGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  549