BAC Information

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BAC

Clone NameB6Ng01-134J11
Chromosome11 (Build37)
Map Location 99,973,398 - 100,036,026
singlet/doubletdoublet
Overlap geneKrt13, Krt15, Krt19
Upstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36
Downstream geneKrt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J11.bB6Ng01-134J11.g
ACCDH934850DH934851
length1,0541,181
definitionDH934850|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J11, 5' end.DH934851|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,973,398 - 99,974,455)(100,034,826 - 100,036,026)
sequence
gaattccacagcattgctttttctccccagcgtgtttgagaacctgtggt
ttatgggagatgccctgtcaggcatactgggacagggacttcagtgtccg
agtccactcctttcaagtatcacttcattgaaccacaaagcaaatccccc
ccccaaaaaacaccccatttgattggctcagcggtcagcatttacagatg
ctgtgcagtccacataacaacacccctcctggtaacaacagccagtctgt
ggccaggcccgggactccaggctgtcattaactatcctgcattctgcaga
tttgactttcaagcttctctgagatgctcagatgaaagcagccacagggc
tgttacgagcgatcgtgaaagttggccagagaatgtgtgccagacacccg
ccagctttcccaaaagcccatccccaacaggtgcctgaaagagtctcagc
agccaaccagccacctgtatcaccctcccaaactccatgtagggacacag
tgcacccagctctcccagagtccccaaagagctgctcaaaggaacatagc
tcgtgtaccctgctctacccaaaacaccaacagcccggagggtaccttcc
aaaagcacataggttccctgagatacaagaacccaaaaatgggaagagga
aatgggttgcaataggggcatgggggattctgggacaatacatcatcagg
ccctattgattacaaccttgcaatgccatctctcctgagccttgctgcag
gcttccctagcgaggaacagttggattccccttccaggaaaggttaggga
agtctcatacccccaatgggtggtcaaagctgccacccgaaatagatgag
ctaagtaccagagaagtcttgtcatggaactccgccctcagcctcacctt
gcttctcaaatgccttgctgtcacacccagtgctggggacagacagacag
aacctcctgttaggactaaatctaagtcctgtccctctactaccttggat
cccactggtggcagggaccctggtctgcttctgacatgagtctgcctctg
cagg
gaattcatcccagctatctctcagttctgggtttcagtttctttgcgagc
gactctaattgtttatggcacagaatggagcggaaaaagaagaatcagga
gcactgggatgggtggtcctcactgactttctgagccacggaaaagtcat
ggtgctacccccattctttttgttttgttttgctctttaaaagcatgata
gtgattttacttcattctactttggatgaatggattatgctccttgcaat
caccagtaacagttctgaaataccactggtctaggatgacacattgacac
gagaaaaccctgacttttattggaatcaattctttatgtgagtacactat
tgtgagctaccatgtggttgctgggaattgaactcaggacctctggaaga
gcagtcggagctcttattcactgagccatctctccagggggctacctcac
tcttattattaagacagggcctctcaccggcctggactcaccaaggttgt
atgccacaacatctggtcagtgtctcctcttcctcctcctcctctttgtc
ctcctcctcctcttccttcttctcttcttctttcttctgctccttctttc
aatgtgggttctgagggctgagttcagtacagctgaattatctccctggt
cttgacatatagtaccctggggttctgtcctccatctctgctgacacaag
cccttgccaccctcagggctcttctctcttttatcagacacaaatatgaa
cagaaccaagttttttcctgccacccccttccacttggcatgacttaaca
catactgaaaatttccaaaggtgcttccatcagtctaataaaaagcttgg
gtaaatggcaaggaaacaaagaaaaatgtaaactcacagcaaatagttag
gcctaacatcaaacagtgagagtggagggaagcttactgaggagtccctt
tcatacagtctgagcttcttcatgcagtcgctgggccgtggattttgtgt
atattctctttgggtgttgataaacacctacttatagggatgagaagact
aagagccacttgtgtctctttgcaaagatcagtcagtccgtacccctcac
tgtctatttcaaatatatgaaatccagttcaaggggaactgggacttgtt
tggactccttgacctgcatgtcagggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99973398_99974455
seq2: B6Ng01-134J11.b_46_1099

seq1  GAATTCCACAGCATTGCTTTTTCTCCCCAGCGTGTTTGAGAACCTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCATTGCTTTTTCTCCCCAGCGTGTTTGAGAACCTGTGGT  50

seq1  TTATGGGAGATGCCCTGTCAGGCATACTGGGACAGGGACTTCAGTGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAGATGCCCTGTCAGGCATACTGGGACAGGGACTTCAGTGTCCG  100

seq1  AGTCCACTCCTTTCAAGTATCACTTCATTGAACCACAAAGCAAATCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTCCTTTCAAGTATCACTTCATTGAACCACAAAGCAAATCCCCC  150

seq1  CCCCAAAAAACACCCCATTTGATTGGCTCAGCGGTCAGCATTTACAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAAACACCCCATTTGATTGGCTCAGCGGTCAGCATTTACAGATG  200

seq1  CTGTGCAGTCCACATAACAACACCCCTCCTGGTAACAACAGCCAGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGTCCACATAACAACACCCCTCCTGGTAACAACAGCCAGTCTGT  250

seq1  GGCCAGGCCCGGGACTCCAGGCTGTCATTAACTATCCTGCATTCTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCCCGGGACTCCAGGCTGTCATTAACTATCCTGCATTCTGCAGA  300

seq1  TTTGACTTTCAAGCTTCTCTGAGATGCTCAGATGAAAGCAGCCACAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTCAAGCTTCTCTGAGATGCTCAGATGAAAGCAGCCACAGGGC  350

seq1  TGTTACGAGCGATCGTGAAAGTTGGCCAGAGAATGTGTGCCAGACACCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACGAGCGATCGTGAAAGTTGGCCAGAGAATGTGTGCCAGACACCCG  400

seq1  CCAGCTTTCCCAAAAGCCCATCCCCAACAGGTGCCTGAAAGAGTCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCCCAAAAGCCCATCCCCAACAGGTGCCTGAAAGAGTCTCAGC  450

seq1  AGCCAACCAGCCACCTGTATCACCCTCCCAAACTCCATGTAGGGACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCAGCCACCTGTATCACCCTCCCAAACTCCATGTAGGGACACAG  500

seq1  TGCACCCAGCTCTCCCAGAGTCCCCAAAGAGCTGCTCAAAGGAACATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCAGCTCTCCCAGAGTCCCCAAAGAGCTGCTCAAAGGAACATAGC  550

seq1  TCGTGTACCCTGCTCTACCCAAAACACCAACAGCCCGGAGGGTACCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTACCCTGCTCTACCCAAAACACCAACAGCCCGGAGGGTACCTTCC  600

seq1  AAAAGCACATAGGTTCCCTGAGATACAAGAACCCAAAAATGGGAAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACATAGGTTCCCTGAGATACAAGAACCCAAAAATGGGAAGAGGA  650

seq1  AATGGGTTGCAATAGGGGCATGGGGGATTCTGGGACAATACATCATCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTGCAATAGGGGCATGGGGGATTCTGGGACAATACATCATCAGG  700

seq1  CCCTATTGATTACAACCTTGCAATGCCATCTCTCCTGAGCCTTGCTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGATTACAACCTTGCAATGCCATCTCTCCTGAGCCTTGCTGCAG  750

seq1  GCTTCCCTAGCGAGGAACAGTTGGATTCCCCTTCCAGG-AAGGTTAGGGA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTCCCTAGCGAGGAACAGTTGGATTCCCCTTCCAGGAAAGGTTAGGGA  800

seq1  AGTCTCATACCCCCAATGGGTGGTCAAAGCTGCCACCCGAAATAGATGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATACCCCCAATGGGTGGTCAAAGCTGCCACCCGAAATAGATGAG  850

seq1  CTAAGTACCAGAGAAGTCTTGTCATGGAACTCCGCCCTCAGCCTCACCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTACCAGAGAAGTCTTGTCATGGAACTCCGCCCTCAGCCTCACCTT  900

seq1  GCTTCTCAAATGCCTTGCTGTCACACCCAGTGCTGGGGACAGACAGACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAAATGCCTTGCTGTCACACCCAGTGCTGGGGACAGACAGACAG  950

seq1  AACCTCCTGTTAGGACTAAATCTAAGGTCCTGTCCCTCTACTACCTTGGA  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACCTCCTGTTAGGACTAAATCTAA-GTCCTGTCCCTCTACTACCTTGGA  999

seq1  TCCCAACTGGTGGCCAGGGACCCTGGTCTGCTTTCTGACATGAGTCTGCC  1049
      |||| |||||||| ||||||||||||||||| |||||||||||||||| |
seq2  TCCC-ACTGGTGG-CAGGGACCCTGGTCTGC-TTCTGACATGAGTCTG-C  1045

seq1  CTCTGCAGG  1058
      |||||||||
seq2  CTCTGCAGG  1054

seq1: chr11_100034826_100036026
seq2: B6Ng01-134J11.g_65_1245 (reverse)

seq1  ACACCACCTG-CATGCAGGACTCAGGGAGTCCAAACAAGGGCCGCAGATC  49
      ||||| |||| ||||||||  ||| |||||||||||||  | | ||| ||
seq2  ACACCCCCTGACATGCAGG--TCAAGGAGTCCAAACAA--GTCCCAGTTC  46

seq1  CCCTGGAACTGGAATTTCCAATGATTGTGAAATAAGACCAAGTGAGTGGT  99
      |||| ||||||| |||||  || ||| |||||| ||||  |||||| |||
seq2  CCCTTGAACTGG-ATTTCATAT-ATT-TGAAAT-AGAC--AGTGAGGGGT  90

seq1  ACGGACTGAACCTGGATCCTCTGC-AAGAGACACAAGT-GCTCTTAGTCC  147
      |||||||||  || ||| || ||| ||||||||||||| |||||||||| 
seq2  ACGGACTGA--CT-GAT-CTTTGCAAAGAGACACAAGTGGCTCTTAGTC-  135

seq1  TTTCTCCATCCCCTAT-AGTTAGTGTTTATCAACACCCAAAGAGATTATA  196
       |||| ||| |||||| |||  ||||||||||||||||||||||| ||||
seq2  -TTCT-CAT-CCCTATAAGTAGGTGTTTATCAACACCCAAAGAGAATATA  182

seq1  CACCAAAAATCCACCGGCCCAGCGACTGCATGAAGAAGCTCAGACTGTTA  246
      |||  |||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CAC--AAAATCCA-CGGCCCAGCGACTGCATGAAGAAGCTCAGACTG-TA  228

seq1  TGAAAGGGACTCCTCAGTAAGCTTCCCTCCACCTCTCACTGTTTGATGTT  296
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAAAGGGACTCCTCAGTAAGCTTCCCTCCA-CTCTCACTGTTTGATGTT  277

seq1  AGGCCTAACTATTTGCTGTGAGTTTACATTTTTCTTTGTTTCCTTGCCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAACTATTTGCTGTGAGTTTACATTTTTCTTTGTTTCCTTGCCAT  327

seq1  TTACCCAAGCTTTTTATTAGACCTGATGGAAGCACCTTTGGAAATTTTCA  396
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTACCCAAGCTTTTTATTAGA-CTGATGGAAGCACCTTTGGAAATTTTCA  376

seq1  GTATGTGTTAAGTCATGCCAAGTGGAAGGGGGTGGCAGGAAAAAACTTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTTAAGTCATGCCAAGTGGAAGGGGGTGGCAGGAAAAAACTTGG  426

seq1  TTCTGTTCATATTTGTGTCTGATAAAAGAGAGAAGAGCCCTGAGGGTGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCATATTTGTGTCTGATAAAAGAGAGAAGAGCCCTGAGGGTGGC  476

seq1  AAGGGCTTGTGTCAGCAGAGATGGAGGACAGAACCCCAGGGTACTATATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTGTGTCAGCAGAGATGGAGGACAGAACCCCAGGGTACTATATG  526

seq1  TCAAGACCAGGGAGATAATTCAGCTGTACTGAACTCAGCCCTCAGAACCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCAGGGAGATAATTCAGCTGTACTGAACTCAGCCCTCAGAACCC  576

seq1  ACATTGAAAGAAGGAGCAGAAGAAAGAAGAAGAGAAGAAGGAAGAGGAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAAGAAGGAGCAGAAGAAAGAAGAAGAGAAGAAGGAAGAGGAGG  626

seq1  AGGAGGACAAAGAGGAGGAGGAGGAAGAGGAGACACTGACCAGATGTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACAAAGAGGAGGAGGAGGAAGAGGAGACACTGACCAGATGTTGT  676

seq1  GGCATACAACCTTGGTGAGTCCAGGCCGGTGAGAGGCCCTGTCTTAATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAACCTTGGTGAGTCCAGGCCGGTGAGAGGCCCTGTCTTAATAA  726

seq1  TAAGAGTGAGGTAGCCCCCTGGAGAGATGGCTCAGTGAATAAGAGCTCCG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGAGGTAGCCCCCTGGAGAGATGGCTCAGTGAATAAGAGCTCCG  776

seq1  ACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTAGC  826

seq1  TCACAATAGTGTACTCACATAAAGAATTGATTCCAATAAAAGTCAGGGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAGTGTACTCACATAAAGAATTGATTCCAATAAAAGTCAGGGTT  876

seq1  TTCTCGTGTCAATGTGTCATCCTAGACCAGTGGTATTTCAGAACTGTTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTGTCAATGTGTCATCCTAGACCAGTGGTATTTCAGAACTGTTAC  926

seq1  TGGTGATTGCAAGGAGCATAATCCATTCATCCAAAGTAGAATGAAGTAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTGCAAGGAGCATAATCCATTCATCCAAAGTAGAATGAAGTAAA  976

seq1  ATCACTATCATGCTTTTAAAGAGCAAAACAAAACAAAAAGAATGGGGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTATCATGCTTTTAAAGAGCAAAACAAAACAAAAAGAATGGGGGTA  1026

seq1  GCACCATGACTTTTCCGTGGCTCAGAAAGTCAGTGAGGACCACCCATCCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGACTTTTCCGTGGCTCAGAAAGTCAGTGAGGACCACCCATCCC  1076

seq1  AGTGCTCCTGATTCTTCTTTTTCCGCTCCATTCTGTGCCATAAACAATTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCTGATTCTTCTTTTTCCGCTCCATTCTGTGCCATAAACAATTA  1126

seq1  GAGTCGCTCGCAAAGAAACTGAAACCCAGAACTGAGAGATAGCTGGGATG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGCTCGCAAAGAAACTGAAACCCAGAACTGAGAGATAGCTGGGATG  1176

seq1  AATTC  1201
      |||||
seq2  AATTC  1181