BAC Information

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BAC

Clone NameB6Ng01-135D24
Chromosome11 (Build37)
Map Location 101,012,732 - 101,138,353
singlet/doubletdoublet
Overlap geneTubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4
Upstream geneKrt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1
Downstream geneCcdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D24.bB6Ng01-135D24.g
ACCDH935340DH935341
length1,0931,078
definitionDH935340|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D24, 5' end.DH935341|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,137,265 - 101,138,353)(101,012,732 - 101,013,819)
sequence
gaattcactggaggggaaaagaaaaatgctgaagcaatgtccaaagaaga
ggaaggcagagctgctgccagccaccatgccctcggctctcccttccttg
ggcccgcccctcaccatcctgccaatatccccggcgaatgtcaccccctt
gcttgcccgctgctcctgggagccggtgctgctgccactcagagagttcc
ttcgcatgatgcctgggagcaggatgagggagggagaacgctaagtggag
ggaggggcagcgaggaggggggcctagtcccccagaaccaaggggtagac
caccagggcctggaagaagaccgtgccgatggggaaggagtctcaaggaa
aaggggtctcaccaggaccagggagatcagagcgctgcaggctgttgcgg
cgggaggtgggaaagctgcccttcgagaggcggcgctggcggcaggacag
catagcagctggagctacaataccaggtgggggctgtttcccaagccggc
tgtataagtcctcgatttccttcttctgtagtgtctgtagtgcctccact
tccgacaagtgcctgaggatgcacgggcgggcaggaaaaggctagtcaaa
cactctgttctctctggttcacctccagctctgccattgttcccagactc
acttctgccgaaggttctgcagctcagcccagaattcctcgtcttccccg
ctgctctccgactcctcactgctcagacacaggctgctgtaggagtagtt
catccacactgggctgggatggctcaagattggggaactgcctccaagta
ggggttccttcccttcatccttttcatcatcgaccgcaacccccaggcct
tcggctgcacggtcactctctgccagagcctccctagtctctgggcctcc
tgcagcactgtcctctgtgtctgagctctctgaggtcagcggagggcttg
gcagctttagggatctggagagagttggggatgctggttgcagggaggct
tctgctggttccttagatgagtcacttggaaacggccaacaagctggggg
ctttccctcttgcgggaagaataaggaggggaggtggaagagg
gaattcctagcccctgtctgatggctcacacccatctgtagctccagttc
tgggggttctcacatccgctctgacctctgtgcacaccaaacacgcacac
agtacacacacacataaggtatatgtacatggggacaacacacagaaaat
gtaattaaataaatagcgcatggtggccaggggctgtgactgagatggag
aacgctggctgaacacctgcaaggccttgggttccatccttaagaacaaa
tgttttaaaattgtttaaagaaaaatggtaagcatatgtatatattatac
tatatgagtgtgtacaggagagaaggaaagaaaagaaaaactaaatttac
ctgggcatggtggcacacacctttaatcccagcactctggaggcagaggc
aggcagatttctgagttcaaggccagcctggtctacaaaatgagttccag
gacagccagggctacacagagtaacactgtctcgaaaaaacaaaacaaaa
caaaacaaccccaaacaactaaatttacatatataaatataactaagtct
caaaattctaatgcacaaaggaaaaaataggttgcttttttctgttatta
tattctaatgtcatttatataaggtttcaggggctggagaattagctcgg
cagtttagggtacttgttgctcttacaaaggaacccgccatccccaggga
atctgatgctgtcttctggcctttgagtgcgtattcctacgtgaatacaa
accactcaaatacagaaataatcaaaatcaataaatcctctcccaggctg
gaaaggtcttggtctaacctcaaagctgaggtcagtcacaagttcaaggc
tagtctgggcagtttagtgagagcctgtctcaaaataaaggtgaaaagga
gttgaagagatggcatggagattaaggaccctgaccaatcctggaggggt
ttggagtcacccgcacacatgcacacacacacacacacacgcacacacac
acacaattaaaacaaactttaaatttacatttatttttaaagatttagct
ctttccttctctttttctttttcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101137265_101138353
seq2: B6Ng01-135D24.b_48_1140 (reverse)

seq1  CCTCTT-CACCT-CCCTCCTTA-TCTTCCCGC-AGAGGGAAAG-CCCCAG  45
      |||||| ||||| ||||||||| ||||||||| |||||||||| ||||||
seq2  CCTCTTCCACCTCCCCTCCTTATTCTTCCCGCAAGAGGGAAAGCCCCCAG  50

seq1  CTTGTTGGCCGTTTCCAAGTGACTTCATCTAAGGAACCAGCAG-AGCCTC  94
      ||||||||||||||||||||||| ||||||||||||||||||| ||||| 
seq2  CTTGTTGGCCGTTTCCAAGTGAC-TCATCTAAGGAACCAGCAGAAGCCT-  98

seq1  CCCTGCAACCAGCATCCCCAACTCTCTCCAGATCCCTAAAGCTGCCAAGC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAACCAGCATCCCCAACTCTCTCCAGATCCCTAAAGCTGCCAAGC  148

seq1  CCTCCGCTGACCTCAGAGAGCTCAGACACAGAGGACAGTGCTGCAGGAGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCTGACCTCAGAGAGCTCAGACACAGAGGACAGTGCTGCAGGAGG  198

seq1  CCCAGAGACTAGGGAGGCTCTGGCAGAGAGTGACCGTGCAGCCGAAGGCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACTAGGGAGGCTCTGGCAGAGAGTGACCGTGCAGCCGAAGGCC  248

seq1  TGGGGGTTGCGGTCGATGATGAAAAGGATGAAGGGAAGGAACCCCTACTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTGCGGTCGATGATGAAAAGGATGAAGGGAAGGAACCCCTACTT  298

seq1  GGAGGCAGTTCCCCAATCTTGAGCCATCCCAGCCCAGTGTGGATGAACTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGTTCCCCAATCTTGAGCCATCCCAGCCCAGTGTGGATGAACTA  348

seq1  CTCCTACAGCAGCCTGTGTCTGAGCAGTGAGGAGTCGGAGAGCAGCGGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACAGCAGCCTGTGTCTGAGCAGTGAGGAGTCGGAGAGCAGCGGGG  398

seq1  AAGACGAGGAATTCTGGGCTGAGCTGCAGAACCTTCGGCAGAAGTGAGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGAGGAATTCTGGGCTGAGCTGCAGAACCTTCGGCAGAAGTGAGTC  448

seq1  TGGGAACAATGGCAGAGCTGGAGGTGAACCAGAGAGAACAGAGTGTTTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACAATGGCAGAGCTGGAGGTGAACCAGAGAGAACAGAGTGTTTGA  498

seq1  CTAGCCTTTTCCTGCCCGCCCGTGCATCCTCAGGCACTTGTCGGAAGTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTTTCCTGCCCGCCCGTGCATCCTCAGGCACTTGTCGGAAGTGG  548

seq1  AGGCACTACAGACACTACAGAAGAAGGAAATCGAGGACTTATACAGCCGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTACAGACACTACAGAAGAAGGAAATCGAGGACTTATACAGCCGG  598

seq1  CTTGGGAAACAGCCCCCACCTGGTATTGTAGCTCCAGCTGCTATGCTGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAACAGCCCCCACCTGGTATTGTAGCTCCAGCTGCTATGCTGTC  648

seq1  CTGCCGCCAGCGCCGCCTCTCGAAGGGCAGCTTTCCCACCTCCCGCCGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCAGCGCCGCCTCTCGAAGGGCAGCTTTCCCACCTCCCGCCGCA  698

seq1  ACAGCCTGCAGCGCTCTGATCTCCCTGGTCCTGGTGAGACCCCTTTTCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGCAGCGCTCTGATCTCCCTGGTCCTGGTGAGACCCCTTTTCCT  748

seq1  TGAGACTCCTTCCCCATCGGCACGGTCTTCTTCCAGGCCCTGGTGGTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCCTTCCCCATCGGCACGGTCTTCTTCCAGGCCCTGGTGGTCTA  798

seq1  CCCCTTGGTTCTGGGGGACTAGGCCCCCCTCCTCGCTGCCCCTCCCTCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGTTCTGGGGGACTAGGCCCCCCTCCTCGCTGCCCCTCCCTCCA  848

seq1  CTTAGCGTTCTCCCTCCCTCATCCTGCTCCCAGGCATCATGCGAAGGAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGTTCTCCCTCCCTCATCCTGCTCCCAGGCATCATGCGAAGGAAC  898

seq1  TCTCTGAGTGGCAGCAGCACCGGCTCCCAGGAGCAGCGGGCAAGCAAGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTGGCAGCAGCACCGGCTCCCAGGAGCAGCGGGCAAGCAAGGG  948

seq1  GGTGACATTCGCCGGGGATATTGGCAGGATGGTGAGGGGCGGGCCCAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTCGCCGGGGATATTGGCAGGATGGTGAGGGGCGGGCCCAAGG  998

seq1  AAGGGAGAGCCGAGGGCATGGTGGCTGGCAGCAGCTCTGCCTTCCTCTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGCCGAGGGCATGGTGGCTGGCAGCAGCTCTGCCTTCCTCTTC  1048

seq1  TTTGGACATTGCTTCAGCATTTTTCTTTTCCCCTCCAGTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACATTGCTTCAGCATTTTTCTTTTCCCCTCCAGTGAATTC  1093

seq1: chr11_101012732_101013819
seq2: B6Ng01-135D24.g_67_1144

seq1  GAATTCCTAGCCCCTGTCTGATGGCTCACACCCATCTGTAGCTCCAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCCCCTGTCTGATGGCTCACACCCATCTGTAGCTCCAGTTC  50

seq1  TGGGGGTTCTCACATCCGCTCTGACCTCTGTGCACACCAAACACGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTCTCACATCCGCTCTGACCTCTGTGCACACCAAACACGCACAC  100

seq1  AGTACACACACACATAAGGTATATGTACATGGGGACAACACACAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACACACACATAAGGTATATGTACATGGGGACAACACACAGAAAAT  150

seq1  GTAATTAAATAAATAGCGCATGGTGGCCAGGGGCTGTGACTGAGATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAATAAATAGCGCATGGTGGCCAGGGGCTGTGACTGAGATGGAG  200

seq1  AACGCTGGCTGAACACCTGCAAGGCCTTGGGTTCCATCCTTAAGAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGGCTGAACACCTGCAAGGCCTTGGGTTCCATCCTTAAGAACAAA  250

seq1  TGTTTTAAAATTGTTTAAAGAAAAATGGTAAGCATATGTATATATTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAATTGTTTAAAGAAAAATGGTAAGCATATGTATATATTATAC  300

seq1  TATATGAGTGTGTACAGGAGAGAAGGAAAGAAAAGAAAAACTAAATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGTGTGTACAGGAGAGAAGGAAAGAAAAGAAAAACTAAATTTAC  350

seq1  CTGGGCATGGTGGCACACACCTTTAATCCCAGCACTCTGGAGGCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGGTGGCACACACCTTTAATCCCAGCACTCTGGAGGCAGAGGC  400

seq1  AGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAATGAGTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAATGAGTTCCAG  450

seq1  GACAGCCAGGGCTACACAGAGTAACACTGTCTCGAAAAAACAAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAGTAACACTGTCTCGAAAAAACAAAACAAAA  500

seq1  CAAAACAACCCCAAACAACTAAATTTACATATATAAATATAACTAAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACCCCAAACAACTAAATTTACATATATAAATATAACTAAGTCT  550

seq1  CAAAATTCTAATGCACAAAGGAAAAAATAGGTTGCTTTTTTCTGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCTAATGCACAAAGGAAAAAATAGGTTGCTTTTTTCTGTTATTA  600

seq1  TATTCTAATGTCATTTATATAAGGTTTCAGGGGCTGGAGAATTAGCTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAATGTCATTTATATAAGGTTTCAGGGGCTGGAGAATTAGCTCGG  650

seq1  CAGTTTAGGGTACTTGTTGCTCTTACAAAGGAACCCGCCATCCCCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGGGTACTTGTTGCTCTTACAAAGGAACCCGCCATCCCCAGGGA  700

seq1  ATCTGATGCTGTCTTCTGGCCTTTGAGTGCGTATTCCTACGTGAATACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCTGTCTTCTGGCCTTTGAGTGCGTATTCCTACGTGAATACAA  750

seq1  ACCACTCAAATACAGAAAATAATCAAAATCAATAAATCCTCTCCCAGGCT  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCACTCAAATACAG-AAATAATCAAAATCAATAAATCCTCTCCCAGGCT  799

seq1  GGAAAGGTCTTGGTCTAACCTCAAAGCTGAGGTCAGTCACAAGTTCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTCTTGGTCTAACCTCAAAGCTGAGGTCAGTCACAAGTTCAAGG  849

seq1  CTAGTCTGGGCAGTTTAGTGAGAGCCTGTCTCAAAATAAAAGGTGAAAAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAGTCTGGGCAGTTTAGTGAGAGCCTGTCTCAAAAT-AAAGGTGAAAAG  898

seq1  GAGTTGAAGAGATGGCATGGAGATTAAGGACCCTGACCAATCCTGGAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAGAGATGGCATGGAGATTAAGGACCCTGACCAATCCTGGAGGG  948

seq1  GTTTGGAGGTCACACGCACACATGCACACACACACACACACACACACACA  1000
      ||||||| ||||| ||||||||||||||||||||||||||||| ||||||
seq2  GTTTGGA-GTCACCCGCACACATGCACACACACACACACACACGCACACA  997

seq1  CACACCACAATTAAAACAAACATTTAAATTTTACATTTATTTTTAAAGAT  1050
      |||| |||||||||||||||| |||||| |||||||||||||||||||||
seq2  CACA-CACAATTAAAACAAAC-TTTAAA-TTTACATTTATTTTTAAAGAT  1044

seq1  TTAGCTTTCTTTCTTTCTTCTTTTTTCTTTTTTCTTTT  1088
      |||||  |||||| ||||   ||||||||||| |||||
seq2  TTAGC--TCTTTCCTTCT--CTTTTTCTTTTTCCTTTT  1078