BAC Information

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BAC

Clone NameB6Ng01-135F22
Chromosome11 (Build37)3 (Build37)
Map Location 9,945,025 - 9,946,1678,345,869 - 8,346,105
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
Downstream geneLOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135F22.bB6Ng01-135F22.g
ACCDH935424DH935425
length1,131679
definitionDH935424|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F22, 5' end.DH935425|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,945,025 - 9,946,167)(8,345,869 - 8,346,105)
sequence
gaattctggaatagagccaggtgtgagaaagtcactcaggaagatgtgat
aagatggacgcatggtacctgagaataggtaaccagccatgtggcagaat
gtagattagaataaatgagataatttaagttattatttaataagagaaaa
acctagctatatagacaaggtatttgtaaatatattttgaccctgagtct
tatttctgggagagtggagctgggaagaagaaccagacataacctctaca
gtgtcctcctcaagtcctaattaacttcacaatatcccactccctgaaat
gatctcatgggcattagatttcaatatgtgaatttgggagtaggggcata
taaatccagtccagtgttgcttttgtcatgatgagaacatagaaagcaaa
aatttcaacaactctatttctcattggaacaaatgtatgactttagtttg
tttaagatgctgaccacccgtggatatgtgccactaactgggcttgtgaa
tacatgattttaaatttggtgctgagtcctagagtctggcctgtgcgtgg
acttctcaacagttggtgcaattaataatttgactggtaataatcattag
aactagcatttatgatcccttcctcatcataaatgtttatgtttataaat
aattttcataaaaggcgaatgagtaagcattttcctctgtttttactttt
ttctgcagtactgaaatgtttcaacattagctatcattgctgagcaaaga
aagctgcattcacgggtggtgcattctcacttctggtaaaatagcatctg
attgaatgcaacgcattgaggatcactgcaatgcagctttgatgcctgtg
gctgccttagtgggaactgaaccttgttgatgggtctaatgctgctactc
ctcaatgtatccagtcggtagagagacacaggccacagttaaactgagtt
tcaggttgatgcctgtacttcccagggtgttttgtttgttggttattttg
gtttgtttggtttgttttttagaaaaataaagaatctgatagtgaagttg
catgactggccagtacatctattcatttgaccaatgttttcttaggctag
actgaaaagaaattaggttttttgtttgttt

gaattcaaaaaaaaaaaaatcatcagatcctactaaaagggcctatactg
aaaaacctgggaaatctagatgaaatagatggttttctagacagacacca
cttaccaaagttaaataaagagccagtaaactatataaacaggtccatat
cccataaggaaatacaagaaatcattaaaaacctcccagacaaaaaaaaa
aaaaaaaaggccacgggcaggcagatttagtgcagaattctaccagacct
tcaaagaagacctaatacattcaatattcctcaaactattctataaaata
gaaagacaaggaacactacctatttattctatgaagccaaaattactctg
atacccgtcacacaatgacccaaccaaaaaaagagaacttcagaccaatc
ttgcttatgaatattgatacaaaaatactcaataaaattcttacatacca
aatctaagaacacatcaaaaccatcattcaccaccatcaattaggcttca
tcctagggatgcaaggttgaatcaataaatgaaaatccattaatgtaatc
cactattttcaagggaaaaataatatgatcatttctttagatgcagaaaa
agcatttgacaaaatacagcaccccttcatcttaaaagtattggagagat
caggaattcaaggcccataactaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9945025_9946167
seq2: B6Ng01-135F22.b_42_1172

seq1  GAATTCTGGAATAGAGCCAGGTGTGAGAAAGTCACTCAGGAAGATGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATAGAGCCAGGTGTGAGAAAGTCACTCAGGAAGATGTGAT  50

seq1  AAGATGGACGCATGGTACCTGAGAATAGGTAACCAGCCATGTGGCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGACGCATGGTACCTGAGAATAGGTAACCAGCCATGTGGCAGAAT  100

seq1  GTAGATTAGAATAAATGAGATAATTTAAGTTATTATTTAATAAGAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTAGAATAAATGAGATAATTTAAGTTATTATTTAATAAGAGAAAA  150

seq1  ACCTAGCTATATAGACAAGGTATTTGTAAATATATTTTGACCCTGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCTATATAGACAAGGTATTTGTAAATATATTTTGACCCTGAGTCT  200

seq1  TATTTCTGGGAGAGTGGAGCTGGGAAGAAGAACCAGACATAACCTCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGGAGAGTGGAGCTGGGAAGAAGAACCAGACATAACCTCTACA  250

seq1  GTGTCCTCCTCAAGTCCTAATTAACTTCACAATATCCCACTCCCTGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCCTCAAGTCCTAATTAACTTCACAATATCCCACTCCCTGAAAT  300

seq1  GATCTCATGGGCATTAGATTTCAATATGTGAATTTGGGAGTAGGGGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATGGGCATTAGATTTCAATATGTGAATTTGGGAGTAGGGGCATA  350

seq1  TAAATCCAGTCCAGTGTTGCTTTTGTCATGATGAGAACATAGAAAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCAGTCCAGTGTTGCTTTTGTCATGATGAGAACATAGAAAGCAAA  400

seq1  AATTTCAACAACTCTATTTCTCATTGGAACAAATGTATGACTTTAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAACAACTCTATTTCTCATTGGAACAAATGTATGACTTTAGTTTG  450

seq1  TTTAAGATGCTGACCACCCGTGGATATGTGCCACTAACTGGGCTTGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGCTGACCACCCGTGGATATGTGCCACTAACTGGGCTTGTGAA  500

seq1  TACATGATTTTAAATTTGGTGCTGAGTCCTAGAGTCTGGCCTGTGCGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATTTTAAATTTGGTGCTGAGTCCTAGAGTCTGGCCTGTGCGTGG  550

seq1  ACTTCTCAACAGTTGGTGCAATTAATAATTTGACTGGTAATAATCATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAACAGTTGGTGCAATTAATAATTTGACTGGTAATAATCATTAG  600

seq1  AACTAGCATTTATGATCCCTTCCTCATCATAAATGTTTATGTTTATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCATTTATGATCCCTTCCTCATCATAAATGTTTATGTTTATAAAT  650

seq1  AATTTTCATAAAAGGCGAATGAGTAAGCATTTTCCTCTGTTTTTACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATAAAAGGCGAATGAGTAAGCATTTTCCTCTGTTTTTACTTTT  700

seq1  TTCTGCAGTACTGAAATGTTTCAACATTAGCTATCATTGCTGAGCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGTACTGAAATGTTTCAACATTAGCTATCATTGCTGAGCAAAGA  750

seq1  AAGCTGCATTCACGGGTGGTGCATTCTCACTTCTGGTAAAATAGCATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATTCACGGGTGGTGCATTCTCACTTCTGGTAAAATAGCATCTG  800

seq1  ATTGAATGCAACGCATTGAGGATCACTGCAATGCAGCTTTGATGCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGCAACGCATTGAGGATCACTGCAATGCAGCTTTGATGCCTGTG  850

seq1  GCTGCCTTAGTGGGAACTGAACCTTGTTGATGGGTCTAATGCTGCTACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTAGTGGGAACTGAACCTTGTTGATGGGTCTAATGCTGCTACTC  900

seq1  CTCAATGTATCCAGTCGGTAGAGAGACACAGGCCACAGTTAAAACTGAGT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCAATGTATCCAGTCGGTAGAGAGACACAGGCCACAGTT-AAACTGAGT  949

seq1  TTCAGGTTGATGCCTGTACTTCCAAGGGTGTTTTTGTTTGTTTGTTTATT  1000
      ||||||||||||||||||||||| |||||| ||||||||| ||| |||||
seq2  TTCAGGTTGATGCCTGTACTTCCCAGGGTG-TTTTGTTTG-TTGGTTATT  997

seq1  TTTGTTTTGTTTTGTTTTGTTTTTTTAAGAAAAAATAAAGAATCTGATAA  1050
      || ||||   |||| ||||||||||  || |||||||||||||||||| |
seq2  TTGGTTT--GTTTGGTTTGTTTTTT--AG-AAAAATAAAGAATCTGAT-A  1041

seq1  GTGAAGTTGCATGACTGGCAAGTACATCTATTCATTTGACCCATTGTTTT  1100
      ||||||||||||||||||| ||||||||||||||||||| ||| ||||||
seq2  GTGAAGTTGCATGACTGGCCAGTACATCTATTCATTTGA-CCAATGTTTT  1090

seq1  CTTAGGCTAAAATTGAAAGAAATTATGTTTTTTTGTTTTGTTT  1143
      ||||||||| | |  |||||||||| |||||||   |||||||
seq2  CTTAGGCTAGACTGAAAAGAAATTAGGTTTTTT--GTTTGTTT  1131


seq1: chr3_8345869_8346105
seq2: B6Ng01-135F22.g_82_359 (reverse)

seq1  GAATAGTTTGAAGAGTATTG---GTATTAGGTCTTCTTTGAAGGTCTGGT  47
      ||||||||||| || |||||   |||||||||||||||||||||||||||
seq2  GAATAGTTTGAGGAATATTGAATGTATTAGGTCTTCTTTGAAGGTCTGGT  50

seq1  AGTACTCTGCACTAAACCAATCAGGTCCTGGGC----------TTTTTTT  87
      || | ||||||||||| |   | |  | ||| |          |||||||
seq2  AGAATTCTGCACTAAATCTGCCTGCCCGTGGCCTTTTTTTTTTTTTTTTT  100

seq1  GGTTGGGAGACTTTTAATGACTACTTCTATTTCTATAGAGATTATAGGAC  137
      |  ||||||  ||||||||| | ||| ||||||  ||  |  ||| |  |
seq2  GTCTGGGAGGTTTTTAATGATTTCTTGTATTTCCTTATGGGATATGGACC  150

seq1  TGTTTAGATAGTT-------------TTTA----------------TCTG  158
      |||||| ||||||             ||||                ||||
seq2  TGTTTATATAGTTTACTGGCTCTTTATTTAACTTTGGTAAGTGGTGTCTG  200

seq1  TCTATAAAATTGTCCATTTCATTCAGATTTTCCAGTGTTGCTGAATACAG  208
      |||| ||||   || |||||||  |||||| |||| |||  | | || ||
seq2  TCTAGAAAACCATCTATTTCATCTAGATTTCCCAG-GTTTTTCAGTATAG  249

seq1  GCTTTTGTAGTAGGATCTGATGATTTTTT  237
      ||  || ||||||||||||||||||||||
seq2  GCCCTTTTAGTAGGATCTGATGATTTTTT  278


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