BAC Information

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BAC

Clone NameB6Ng01-135G13
Chromosome11 (Build37)
Map Location 94,249,102 - 94,411,835
singlet/doubletdoublet
Overlap geneAbcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40
Downstream geneBC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135G13.bB6Ng01-135G13.g
ACCDH935452DH935453
length1,0151,024
definitionDH935452|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G13, 5' end.DH935453|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,249,102 - 94,250,111)(94,410,805 - 94,411,835)
sequence
gaattcctgatcctcctgcctccgaatgccaagtgccaggatttataggt
gtggtgcttataatcaaacaccagcttcatgaatgcttggccagcactcc
tccaactaagctgcgtctttagccccttggttgttttgaaacaagatctt
accatctatggccagggatagcctcagcctcagggcgatctttctgctcc
agctttctgagtactgggattgcaggtgtggcaataagaccatttgggag
agtgaggtggggaggggaagtcagtccgtttggcaaagcttcctctctca
ggttacatccctgactcacttcctttcctaagtttctccctttagctcag
gcccagggaacaggaggagacggtctaggaccacaaggaaccaaatctcc
cacctagaagccaagaactcagagaccaaaactaataagcctgaggttcg
agatctccagctttaatgaaaagggttttccaggtccctgtcctggcagg
gaagattaggtccctggaaggagatggtatctagcaggcttacaagtggg
catcttccacccacctgtccattcagcagccatcctgttcccagcatctt
ttgcatgacattgttttcatatgggagcccagatgcatcgaaacttgaac
cttgtccattgctgtgcctacatgtgttgggcaacaatctaataggaaac
ccttggaatctataatacctatagccctaattgtttgagcacctttattt
tacggccctggaccacaagctcatcctcccggaattcgtcaccaggcagc
tgcagacctgaatgctctccccaaccccccccccccaaaccacctaagct
cagctagactcaaagagttgagtgacttcctcacatctatgacagaatca
gatgaaccaataaggagcatggaaatgggtcttcaaggtaccgcgcttag
tccttcctaagtggcaggataattatttttccttatgtggtttgacccct
ataaaaccatgtgaa
gaattcttttcttctctttcccctccctcccttcctttaaaaaaatattt
attttatttcatgtgttttgcctgcatatgtctgtgcaccatgtgcatgc
tggaggaagtctggagtttccgacttacagatggttgttagccacagtgt
gtgggtgcagggtcctccgcaagagccgatagtgctcttaactgctgagc
cagcccctccagccctgcttccttttttctgaaacattgtctcatgcagt
cagccagacctggattatagggctgttctgccacacatgacttttttttc
ttttttttaaacaaagttttatttatatttaaattttatttatttttaaa
tatatgtgtttgtacgcctgcgtgccagaagaggtcattaggtcacttta
tagatggttgtgagccaccatgtggttgctgggacagcctcaggttttac
tttctctctctctctctctctctctctctctctcgtttgtttaaacgtaa
ttgggtattttgcctgtatgtatgtatgtatgtatacagtatttatgcca
caattattgattttattattgtatctgtgtgtattatgtgcacacatgag
tttgctagaaggtgcacccatggaggcaaaaggaccactatgtggagcga
ggctctctcccactacatatttggcatccagggaccattctgctttgtag
ggcaactgtccgttccttgctgagccatcatgtctttccccctcttttgt
tctatgagataggctctcacactgtagcccagggctggcttggactctca
caatcctccgggagttctagtattccaggtgtgagccacccgcccctggc
ttccaacgattttctgttcctctaatacccagcccgtgagcttctttccg
ctgactcccacgcacacttctgtaggcccaccagctcacagccagttact
agaccgaattactcttaacttggttagtgtcccctggccagtagactgac
tgattttagtaggccgggctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94249102_94250111
seq2: B6Ng01-135G13.b_48_1055

seq1  GAATTCCTGATCCTCCTGCCTCCGAATGCCAAGTGCCAGGATTTATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCTCCTGCCTCCGAATGCCAAGTGCCAGGATTTATAGGT  50

seq1  GTGGTGCTTATAATCAAACACCAGCTTCATGAATGCTTGGCCAGCACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTTATAATCAAACACCAGCTTCATGAATGCTTGGCCAGCACTCC  100

seq1  TCCAACTAAGCTGCGTCTTTAGCCCCTTGGTTGTTTTGAAACAAGATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTAAGCTGCGTCTTTAGCCCCTTGGTTGTTTTGAAACAAGATCTT  150

seq1  ACCATCTATGGCCAGGGATAGCCTCAGCCTCAGGGCGATCTTTCTGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTATGGCCAGGGATAGCCTCAGCCTCAGGGCGATCTTTCTGCTCC  200

seq1  AGCTTTCTGAGTACTGGGATTGCAGGTGTGGCAATAAGACCATTTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTGAGTACTGGGATTGCAGGTGTGGCAATAAGACCATTTGGGAG  250

seq1  AGTGAGGTGGGGAGGGGAAGTCAGTCCGTTTGGCAAAGCTTCCTCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTGGGGAGGGGAAGTCAGTCCGTTTGGCAAAGCTTCCTCTCTCA  300

seq1  GGTTACATCCCTGACTCACTTCCTTTCCTAAGTTTCTCCCTTTAGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATCCCTGACTCACTTCCTTTCCTAAGTTTCTCCCTTTAGCTCAG  350

seq1  GCCCAGGGAACAGGAGGAGACGGTCTAGGACCACAAGGAACCAAATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGAACAGGAGGAGACGGTCTAGGACCACAAGGAACCAAATCTCC  400

seq1  CACCTAGAAGCCAAGAACTCAGAGACCAAAACTAATAAGCCTGAGGTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGAAGCCAAGAACTCAGAGACCAAAACTAATAAGCCTGAGGTTCG  450

seq1  AGATCTCCAGCTTTAATGAAAAGGGTTTTCCAGGTCCCTGTCCTGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCCAGCTTTAATGAAAAGGGTTTTCCAGGTCCCTGTCCTGGCAGG  500

seq1  GAAGATTAGGTCCCTGGAAGGAGATGGTATCTAGCAGGCTTACAAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTAGGTCCCTGGAAGGAGATGGTATCTAGCAGGCTTACAAGTGGG  550

seq1  CATCTTCCACCCACCTGTCCATTCAGCAGCCATCCTGTTCCCAGCATC-T  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATCTTCCACCCACCTGTCCATTCAGCAGCCATCCTGTTCCCAGCATCTT  600

seq1  TTGCATGACATTGTTTTCATATGGGAGCCCAGATGCATCGAAACTTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGACATTGTTTTCATATGGGAGCCCAGATGCATCGAAACTTGAAC  650

seq1  CTTGTCCATTGCTGTGCCTACATGTGTTGGGCAACAATCTAATAGGAAA-  698
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTGTCCATTGCTGTGCCTACATGTGTTGGGCAACAATCTAATAGGAAAC  700

seq1  CCTTGGAATCTATAATACCTATAGCCCTAATGTTTAGAGCACCTT--ATT  746
      |||||||||||||||||||||||||||||||  || |||||||||   ||
seq2  CCTTGGAATCTATAATACCTATAGCCCTAATTGTTTGAGCACCTTTATTT  750

seq1  TACGGCCCTGGACCACAAGCTCATCCTCCCGGAA-TCGTCACCAGGCAGC  795
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACGGCCCTGGACCACAAGCTCATCCTCCCGGAATTCGTCACCAGGCAGC  800

seq1  TGCAGACCTGAATGCTCTCCCCAACCCCCCCCCCCCAAACCACCTAAGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACCTGAATGCTCTCCCCAACCCCCCCCCCCCAAACCACCTAAGCT  850

seq1  CAGCTAGACTCAAAGAAGTTGAGTGACTTCCTCACATCAATGACAGAATC  895
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  CAGCTAGACTCAAAG-AGTTGAGTGACTTCCTCACATCTATGACAGAATC  899

seq1  GAGATGAACCAAAGAAGGAGCCATGGAAATGGGTCTTCAAGGTACCGGCG  945
       ||||||||| || |||||| ||||||||||||||||||||||||| |||
seq2  -AGATGAACC-AATAAGGAG-CATGGAAATGGGTCTTCAAGGTACC-GCG  945

seq1  CTTAAGTCCCTCCTTAGGTGGCAGGATAATTATCTTTTCCATATG-GGCT  994
      ||| ||||| ||| || |||||||||||||||| |||||| |||| || |
seq2  CTT-AGTCCTTCC-TAAGTGGCAGGATAATTAT-TTTTCCTTATGTGGTT  992

seq1  TGACCCCTATAAAACC  1010
      ||||||||||||||||
seq2  TGACCCCTATAAAACC  1008

seq1: chr11_94410805_94411835
seq2: B6Ng01-135G13.g_67_1090 (reverse)

seq1  TGAAAGCCAGGCCTACTAAAATCAGGTCAGTCTAACTGGCAGGGGAGACA  50
      |||||||| ||||||||||||||| |||||||| ||||||  ||| ||||
seq2  TGAAAGCCCGGCCTACTAAAATCA-GTCAGTCT-ACTGGCCAGGG-GACA  47

seq1  CTAACCAAGTTAAGAGTTAATTCGGTACTAGGTAACTGGCTGTGAGCTGG  100
      |||||||||||||||| ||||||||| ||| |||||||||||||||||||
seq2  CTAACCAAGTTAAGAG-TAATTCGGT-CTA-GTAACTGGCTGTGAGCTGG  94

seq1  TGGGCCTACAGAAGTGTGCGTGGGAGTCAGCGGAAAGGAAGCTCACGGGC  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGCCTACAGAAGTGTGCGTGGGAGTCAGCGGAAA-GAAGCTCACGGGC  143

seq1  TGGGTATTAGAGGAACAGAAAATCGTTGGAAGCCAGGGGC-GGTGGCTCA  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGGTATTAGAGGAACAGAAAATCGTTGGAAGCCAGGGGCGGGTGGCTCA  193

seq1  CACCTGGAATACTAGAACTCCCGGAGGATTGTGGGAGTTCCAAGCCAG-C  248
      ||||||||||||||||||||||||||||||||| ||| |||||||||| |
seq2  CACCTGGAATACTAGAACTCCCGGAGGATTGTGAGAG-TCCAAGCCAGCC  242

seq1  CTGGGCTACAGTGTGAGAGCCTATCTCATAGAAACAAAAGAGGGGGAAAG  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGGCTACAGTGTGAGAGCCTATCTCATAG-AACAAAAGAGGGGGAAAG  291

seq1  ACATGATGGCTCAGCAAGGAACGGACAGTTGCCCTACAAAGCAGAATGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGCTCAGCAAGGAACGGACAGTTGCCCTACAAAGCAGAATGGT  341

seq1  CCCTGGATGCCAAATATGTAGTGGGAGAGAGCCTCGCTCCACATAGTGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGCCAAATATGTAGTGGGAGAGAGCCTCGCTCCACATAGTGGT  391

seq1  CCTTTTGCCTCCATGGGTGCACCTTCTAGCAAACTCATGTGTGCACATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCCTCCATGGGTGCACCTTCTAGCAAACTCATGTGTGCACATAA  441

seq1  TACACACAGATACAATAATAAAATCAATAATTGTGGCATAAATACTGTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGATACAATAATAAAATCAATAATTGTGGCATAAATACTGTAT  491

seq1  ACATACATACATACATACAGGCAAAATACCCAATTACGTTTAAACAAACG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACATACAGGCAAAATACCCAATTACGTTTAAACAAACG  541

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTAAAACCTGAGGCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTAAAACCTGAGGCTGT  591

seq1  CCCAGCAACCACATGGTGGCTCACAACCATCTATAAAGTGACCTAATGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGGTGGCTCACAACCATCTATAAAGTGACCTAATGAC  641

seq1  CTCTTCTGGCACGCAGGCGTACAAACACATATATTTAAAAATAAATAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGCACGCAGGCGTACAAACACATATATTTAAAAATAAATAAAA  691

seq1  TTTAAATATAAATAAAACTTTGTTTAAAAAAAAGAAAAAAAAGTCATGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAAATAAAACTTTGTTTAAAAAAAAGAAAAAAAAGTCATGTG  741

seq1  TGGCAGAACAGCCCTATAATCCAGGTCTGGCTGACTGCATGAGACAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAACAGCCCTATAATCCAGGTCTGGCTGACTGCATGAGACAATGT  791

seq1  TTCAGAAAAAAGGAAGCAGGGCTGGAGGGGCTGGCTCAGCAGTTAAGAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAAAAGGAAGCAGGGCTGGAGGGGCTGGCTCAGCAGTTAAGAGC  841

seq1  ACTATCGGCTCTTGCGGAGGACCCTGCACCCACACACTGTGGCTAACAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCGGCTCTTGCGGAGGACCCTGCACCCACACACTGTGGCTAACAAC  891

seq1  CATCTGTAAGTCGGAAACTCCAGACTTCCTCCAGCATGCACATGGTGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAAGTCGGAAACTCCAGACTTCCTCCAGCATGCACATGGTGCAC  941

seq1  AGACATATGCAGGCAAAACACATGAAATAAAATAAATATTTTTTTAAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATGCAGGCAAAACACATGAAATAAAATAAATATTTTTTTAAAGG  991

seq1  AAGGGAGGGAGGGGAAAGAGAAGAAAAGAATTC  1031
      |||||||||||||||||||||||||||||||||
seq2  AAGGGAGGGAGGGGAAAGAGAAGAAAAGAATTC  1024