BAC Information

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BAC

Clone NameB6Ng01-135M18
Chromosome11 (Build37)1 (Build37)
Map Location 53,870,407 - 53,870,45344,070,754 - 44,071,885
singlet/doubletsingletsinglet
Overlap genePdlim4
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4
Downstream geneP4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135M18.bB6Ng01-135M18.g
ACCDH935745DH935746
length8091,114
definitionDH935745|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M18, 5' end.DH935746|Mus musculus domesticus DNA, BAC clone: B6Ng01-135M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,870,407 - 53,870,453)(44,070,754 - 44,071,885)
sequence
gaattcctaaaattatatcagtatttactaagctcttttatagtggaagt
gctattaggtctcttctgattgtcaaaactgcaatgagaactctgccagt
cttccattgtgtcgccagctagatagtaaccagactttctacaaccatta
actacggtcataaaaagggaactaacaatttattataggtggtaggagag
aagataacattttgacagggtaaatctatacaaaccttcacagttacagt
ttttaacttccagtgaacctgtggagctgtgacaggtggcaaatggttag
ccagataattactcctaatggatatacatgtaaacattctctgtcgtaaa
cttcctattctagttatgatttgaatttgtgtaaacttgtggtgaacttt
taatcgtgtagccatgtatcctgaaaggtgtttcagagctgaggtcaaag
agaagagtcataactgaactgaggagaatctttttagacaaaacattttt
tagtcagatataaacaaaacttaagagagagcagaagaagcaggcaggct
tcttagcatgcaacagaacaggtctactcttaaggcaagcttagtactat
taaaaggaataaagctttcttcttacaaacatgagtttaattcatttggc
attcaaatggtagaagccttttctctccctatgcaataaagattggagct
catttttcatccagaataagtgagttctttctggactggtgcttggtctt
ttgtttcaaatgcatatgtaagtatggatctgtgtgtgtgtgtgtgtgtg
tgtgtgtgt
gaattcacatgtgacaaaatgacaaagtatgcccctggtcttttcttaag
agaggacagaagaggtgacaccccatccccattttcttgccaccaagagg
aagtgatgttacctggttacatacaaagtggcctgagtgaactttgtgaa
catggaggagctagataaatatgcatatggctgtgttttggattttgggg
tgagatacattcccacatgttagcaggagtatgttctcttaaatccacaa
ctacccgtcaaaaggcctaagctacccacagtggagccagctttccaagc
ctgggaaagctattagccaaactgcagatattaaattacaactgctttaa
atactccttgagccctataaaccatgatggcagttctcacatgtcataaa
atgggaagagagcacctaacggggctatcatgcagtcacaaatcttcata
ggttttccagtgtttaagaggagcagtgaggtgaaatgtcagggaggctg
aggatactaagcacgtgatctactgttggctaagaactaaagtgatacca
acaatggggattctggcttggagcagaagggtcatgtatggcctttgtct
ttgtatcctaggatatgatagattttgacagtagaatctggcctctagaa
aagatatgggagagcaatcaatgagcatttgatgtctttcagaacagcca
ctcgaggtaaaaaggaaggagatgagtttggaaagaaccctacatagttg
tagcttccttcagggcaggccctacagtgacttcagatgacattaactgt
tgcatggaattttaaaaataaatccacaactacacgtcaaaaggcctaag
ctacccatagtttatgtgaatatatatgttttcatttttatttcctagaa
gtttgttgcattttagatggtatcagtgtgggacatattagacagtttct
tacaatagtaaaggtgattgaggtcgttttatattactagggaaactttg
gttcttttgatgtaatcatgtgtacagcagcattctgacttacacacctc
aaagagagaaactttcaactgactctacagctaagcttcaatagcttgaa
ggaacttgctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53870407_53870453
seq2: B6Ng01-135M18.b_809_854 (reverse)

seq1  ACACACACACACACACACACACACACACAG--CCAGTCTCCTTACATAT  47
      ||||||||||||||||||||||||||||||  |||   | |||||||||
seq2  ACACACACACACACACACACACACACACAGATCCA---TACTTACATAT  46

seq1: chr1_44070754_44071885
seq2: B6Ng01-135M18.g_70_1183

seq1  GAATTCACATGTGACAAAATGACAAAGTATGCCCCTGGTCTTTTCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTGACAAAATGACAAAGTATGCCCCTGGTCTTTTCTTAAG  50

seq1  AGAGGACAGAAGAGGTGACACCCCATCCCCATTTTCTTGCCACCAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAGAAGAGGTGACACCCCATCCCCATTTTCTTGCCACCAAGAGG  100

seq1  AAGTGATGTTACCTGGTTACATACAAAGTGGCCTGAGTGAACTTTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGTTACCTGGTTACATACAAAGTGGCCTGAGTGAACTTTGTGAA  150

seq1  CATGGAGGAGCTAGATAAATATGCATATGGCTGTGTTTTGGATTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGAGCTAGATAAATATGCATATGGCTGTGTTTTGGATTTTGGGG  200

seq1  TGAGATACATTCCCACATGTTAGCAGGAGTATGTTCTCTTAAATCCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACATTCCCACATGTTAGCAGGAGTATGTTCTCTTAAATCCACAA  250

seq1  CTACCCGTCAAAAGGCCTAAGCTACCCACAGTGGAGCCAGCTTTCCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCGTCAAAAGGCCTAAGCTACCCACAGTGGAGCCAGCTTTCCAAGC  300

seq1  CTGGGAAAGCTATTAGCCAAACTGCAGATATTAAATTACAACTGCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGCTATTAGCCAAACTGCAGATATTAAATTACAACTGCTTTAA  350

seq1  ATACTCCTTGAGCCCTATAAACCATGATGGCAGTTCTCACATGTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTTGAGCCCTATAAACCATGATGGCAGTTCTCACATGTCATAAA  400

seq1  ATGGGAAGAGAGCACCTAACGGGGCTATCATGCAGTCACAAATCTTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGAGAGCACCTAACGGGGCTATCATGCAGTCACAAATCTTCATA  450

seq1  GGTTTTCCAGTGTTTAAGAGGAGCAGTGAGGTGAAATGTCAGGGAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCCAGTGTTTAAGAGGAGCAGTGAGGTGAAATGTCAGGGAGGCTG  500

seq1  AGGATACTAAGCACGTGATCTACTGTTGGCTAAGAACTAAAGTGATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTAAGCACGTGATCTACTGTTGGCTAAGAACTAAAGTGATACCA  550

seq1  ACAATGGGGATTCTGGCTTGGAGCAGAAGGGTCATGTATGGCCTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGGATTCTGGCTTGGAGCAGAAGGGTCATGTATGGCCTTTGTCT  600

seq1  TTGTATCCTAGGATATGATAGATTTTGACAGTAGAATCTGGCCTCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCTAGGATATGATAGATTTTGACAGTAGAATCTGGCCTCTAGAA  650

seq1  AAGATATGGGAGAGCAATCAATGAGCATTTGATGTCTTTCAGAACAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGGGAGAGCAATCAATGAGCATTTGATGTCTTTCAGAACAGCCA  700

seq1  CTCGAGGTAAAAAGGAAGGAGATGAGTTTGGAAAGAACCCTACATAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGTAAAAAGGAAGGAGATGAGTTTGGAAAGAACCCTACATAGTTG  750

seq1  TAGCTTCCTTCAGGGCAGGCCCTACAGTGACTTCAGATGACATTAACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCTTCAGGGCAGGCCCTACAGTGACTTCAGATGACATTAACTGT  800

seq1  TGCATGGAATTTTAAAAATAAATCCACAACTACACGTCAAAAGGCCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAATTTTAAAAATAAATCCACAACTACACGTCAAAAGGCCTAAG  850

seq1  CTACCCATAGTTTATGTGAATATATATGTTTTCATTTTTATTTCCTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATAGTTTATGTGAATATATATGTTTTCATTTTTATTTCCTAGAA  900

seq1  GTTTGTTGCATTTTAAGATGGTATCAGTGTGGGACATATTAGGAACAGTT  950
      |||||||||||||| |||||||||||||||||||||||||||  ||||||
seq2  GTTTGTTGCATTTT-AGATGGTATCAGTGTGGGACATATTAG--ACAGTT  947

seq1  TCTTACCAATAGTAAGGGTGATTGA-GTCGTTTATATATTAACCTAGGGG  999
      ||||| ||||||||| ||||||||| ||||||| |||||||  ||| |||
seq2  TCTTA-CAATAGTAAAGGTGATTGAGGTCGTTT-TATATTA--CTA-GGG  992

seq1  AAACCTTGGTTCCTTTGATGGTATCATGGTTGTTAACAAGCAGGCAATTC  1049
      |||| ||||||| |||||||  ||||||  |||  || |||||   ||||
seq2  AAACTTTGGTTCTTTTGATGTAATCATG--TGT--AC-AGCAG--CATTC  1035

seq1  TGACTTACACCACTCAAAAGAGAGAAACTTCTATACTGACTCAACAGCTA  1099
      ||||||||||  ||| |||||||||||||| |  |||||||| |||||||
seq2  TGACTTACACACCTC-AAAGAGAGAAACTT-TCAACTGACTCTACAGCTA  1083

seq1  AGCTTCAATAAGCTTGTAGGAACTTGCTCATCA  1132
      ||||||||| |||||| ||||||||||| ||||
seq2  AGCTTCAAT-AGCTTGAAGGAACTTGCT-ATCA  1114