BAC Information

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BAC

Clone NameB6Ng01-136D07
Chromosome11 (Build37)
Map Location 16,538,516 - 16,686,327
singlet/doubletdoublet
Overlap geneLOC665689, LOC627583, Egfr
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps
Downstream gene2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136D07.bB6Ng01-136D07.g
ACCDH936041DH936042
length9601,160
definitionDH936041|Mus musculus domesticus DNA, BAC clone: B6Ng01-136D07, 5' end.DH936042|Mus musculus domesticus DNA, BAC clone: B6Ng01-136D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,538,516 - 16,539,271)(16,685,145 - 16,686,327)
sequence
gaattctctgacactcatgtaagaaaagccaaacatggttacttcctcag
acaaagagacaaaaagaggaattagaaaatgttatgcaaccaaacagaaa
taagaattttctgttttctgatctcaaggaaacgaagacataacaataca
aataattaatttaataaggactaaagaattaaggtagtgttttaagaaag
ctgtataagttacaaggaaacatagatgaatggtcagggaacaaaaacag
gtgccaatttaccttggacacaaactctgcaaccagttccacgacagcca
gagcaggctccacgcccaggcactctaacatgcccaagttcacaaaagga
tcaggagattccaggatcccaggagcttggtcacaacaggatctcaaggt
cccagaggcagcttggctcccaggatctctgatacatccaggatctcagg
atcacaggatccataaatcacaggatcacagagacagctggactctgagg
agttctcatgcaaccaggatcacaggaaggacaggcttcagtcagattat
agcaaggacaggtatcactagagataatcaaatggaggaaggcagggata
agaacataagcaacagaaaccaaggttacttggcatcatcagaacccaat
tctcccaccatagcaagttctggatataccatcacagtggaaaagcaaga
tttggatataaaatcacttcttttgacaatgagtgaggattttaagatga
acataaacaactccattaaagaaatacaggagaagacaggtaaacaggta
gaagccctcaaagaggaaacacaaaaatcccttaaagaatttctggaaac
acaatcaaacaggcaaaggaaatgaacaaaaccatccaaattctaaaaat
ggaaatagaaataataagaaaatcacaaaggaagacaactctggagttag
aaacctagga
gaattcctaaagattgaaggaagatatactaagataatgttgattcaatc
aattcttgcctcattctaactctaggaaaaaatataagcccctgaaaaca
ctatcattaagcaaggcatggtgggaaacaaagagagacagatctctaga
gttcagagtctatccagatctacaaagagccagagctgcatagagaaact
ctgtcactaaaaaccaaatatgtaaacaagtaaaattaaaaggcaaaaag
aagaaagaaaacatcatcattattctgtgaaattaaaaaaaaataccagt
aaatttcactttttgaattagtccccaagaagagaacccaaaagagaaat
ataatttcctgcaaaactaaagcgccactgaaggccgaaataccaagaaa
ccacacaaactggcccaagaatagttgaacaaagcagagcacattaatat
aatttaccacatgactttcacgggcaattcagtgtctagaagcatacaaa
atggtacagttatgaaaggtaagagacatgggatagagtgactgacttta
agaagggttaaattgttctcttggtggcagagggcatcttagcatctgtt
agaatcaccttcagcctttcttcatgtgacatggaatgggtcagcaccca
acaagtccttagcacctaaagggaagaccactgagttgtctgctccctgt
ttgaccatgcatggagagagtcatgggttactgtctgtttctagatagac
ctccacacagactttacctggcttggatatatctaatattcatttggtac
atctctgggagaatgaaggcacgccatatggtaagatataataattccat
ttccccactgtgtggcatttccaccccagtaggtctctcacagcccccca
gagtccccttatgcagtcaagtatctatcatgacctattggactgagaac
aggaaagttacacatctcactcattttactttatacagaagtcagtgcag
aatgtaacaaatacttgacactttaagaaacagtgttgaggagatagaca
tgtgtacctgatttgaatttaatacatagtggagaacgtttctctcagct
cctaatgtctgtaaccttattgttcctcacgttggagtgacccttaacca
taagaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_16538516_16539271
seq2: B6Ng01-136D07.b_45_800

seq1  GAATTCTCTGACACTCATGTAAGAAAAGCCAAACATGGTTACTTCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACACTCATGTAAGAAAAGCCAAACATGGTTACTTCCTCAG  50

seq1  ACAAAGAGACAAAAAGAGGAATTAGAAAATGTTATGCAACCAAACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGACAAAAAGAGGAATTAGAAAATGTTATGCAACCAAACAGAAA  100

seq1  TAAGAATTTTCTGTTTTCTGATCTCAAGGAAACGAAGACATAACAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTTCTGTTTTCTGATCTCAAGGAAACGAAGACATAACAATACA  150

seq1  AATAATTAATTTAATAAGGACTAAAGAATTAAGGTAGTGTTTTAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAATTTAATAAGGACTAAAGAATTAAGGTAGTGTTTTAAGAAAG  200

seq1  CTGTATAAGTTACAAGGAAACATAGATGAATGGTCAGGGAACAAAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAGTTACAAGGAAACATAGATGAATGGTCAGGGAACAAAAACAG  250

seq1  GTGCCAATTTACCTTGGACACAAACTCTGCAACCAGTTCCACGACAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATTTACCTTGGACACAAACTCTGCAACCAGTTCCACGACAGCCA  300

seq1  GAGCAGGCTCCACGCCCAGGCACTCTAACATGCCCAAGTTCACAAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCTCCACGCCCAGGCACTCTAACATGCCCAAGTTCACAAAAGGA  350

seq1  TCAGGAGATTCCAGGATCCCAGGAGCTTGGTCACAACAGGATCTCAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGATTCCAGGATCCCAGGAGCTTGGTCACAACAGGATCTCAAGGT  400

seq1  CCCAGAGGCAGCTTGGCTCCCAGGATCTCTGATACATCCAGGATCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGCAGCTTGGCTCCCAGGATCTCTGATACATCCAGGATCTCAGG  450

seq1  ATCACAGGATCCATAAATCACAGGATCACAGAGACAGCTGGACTCTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGATCCATAAATCACAGGATCACAGAGACAGCTGGACTCTGAGG  500

seq1  AGTTCTCATGCAACCAGGATCACAGGAAGGACAGGCTTCAGTCAGATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATGCAACCAGGATCACAGGAAGGACAGGCTTCAGTCAGATTAT  550

seq1  AGCAAGGACAGGTATCACTAGAGATAATCAAATGGAGGAAGGCAGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGACAGGTATCACTAGAGATAATCAAATGGAGGAAGGCAGGGATA  600

seq1  AGAACATAAGCAACAGAAACCAAGGTTACTTGGCATCATCAGAACCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAAGCAACAGAAACCAAGGTTACTTGGCATCATCAGAACCCAAT  650

seq1  TCTCCCACCATAGCAAGTTCTGGATATACCATCACAGTGGAAAAGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACCATAGCAAGTTCTGGATATACCATCACAGTGGAAAAGCAAGA  700

seq1  TTTGGATATAAAATCACTTCTTTTGACAATGAGTGAGGATTTTAAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATAAAATCACTTCTTTTGACAATGAGTGAGGATTTTAAGATGA  750

seq1  ACATAA  756
      ||||||
seq2  ACATAA  756

seq1: chr11_16685145_16686327
seq2: B6Ng01-136D07.g_68_1227 (reverse)

seq1  AAAATAATCTTATGGTTAGGGGTCACTACAACGTGAGGAACAATTAAAGG  50
      |||||  ||||||||||| |||||||| ||||||||||||||||   | |
seq2  AAAAT--TCTTATGGTTAAGGGTCACTCCAACGTGAGGAACAAT---AAG  45

seq1  GTTACAG-CATTAGGGAAGCTGAGAGACACTGTTCTCAACTATGTATAAT  99
      ||||||| |||||||  |||||||||| || |||||| ||||||||| | 
seq2  GTTACAGACATTAGG--AGCTGAGAGAAAC-GTTCTCCACTATGTATTAA  92

seq1  ATTCAAATCAAGGTACACATGTCTATCTCCTCAAACACTGTTTCTTTAAG  149
      ||||||||| |||||||||||||||||||||| ||||||||||||| |||
seq2  ATTCAAATC-AGGTACACATGTCTATCTCCTC-AACACTGTTTCTTAAAG  140

seq1  GTTGGCCAAGTTATTTTGTTTAACATTCTGGCACTTGACTTTCTGGTATA  199
          | |||||   ||||||  ||||||| |||| |||| |||| |||||
seq2  ---TGTCAAGT--ATTTGTT--ACATTCT-GCAC-TGAC-TTCT-GTATA  179

seq1  AAGTAAAATGGAGTGAGATGTGTTAACTTTCCTGTTCTCAGTCCAATAGG  249
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  AAGTAAAAT-GAGTGAGATGTG-TAACTTTCCTGTTCTCAGTCCAATAGG  227

seq1  TCATGATAGATACTTGACTGCATAAGGGGACTTCTGGGGGGCTGTGAGAG  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCATGATAGATACTTGACTGCATAAGGGGAC-TCTGGGGGGCTGTGAGAG  276

seq1  ACCTACTGGGGTGGAAATGCCACACAGTGGGGAAATGGAATTATTATATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGGGGTGGAAATGCCACACAGTGGGGAAATGGAATTATTATATC  326

seq1  TTACCATATGGCGTGCCTTCATTCTCCCAGAGATGTACCAAATGAATATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATATGGCGTGCCTTCATTCTCCCAGAGATGTACCAAATGAATATT  376

seq1  AGATATATCCAAGCCAGGTAAAGTCTGTGTGGAGGTCTATCTAGAAACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATCCAAGCCAGGTAAAGTCTGTGTGGAGGTCTATCTAGAAACAG  426

seq1  ACAGTAACCCATGACTCTCTCCATGCATGGTCAAACAGGGAGCAGACAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACCCATGACTCTCTCCATGCATGGTCAAACAGGGAGCAGACAAC  476

seq1  TCAGTGGTCTTCCCTTTAGGTGCTAAGGACTTGTTGGGTGCTGACCCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTCTTCCCTTTAGGTGCTAAGGACTTGTTGGGTGCTGACCCATT  526

seq1  CCATGTCACATGAAGAAAGGCTGAAGGTGATTCTAACAGATGCTAAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCACATGAAGAAAGGCTGAAGGTGATTCTAACAGATGCTAAGATG  576

seq1  CCCTCTGCCACCAAGAGAACAATTTAACCCTTCTTAAAGTCAGTCACTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCACCAAGAGAACAATTTAACCCTTCTTAAAGTCAGTCACTCT  626

seq1  ATCCCATGTCTCTTACCTTTCATAACTGTACCATTTTGTATGCTTCTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGTCTCTTACCTTTCATAACTGTACCATTTTGTATGCTTCTAGA  676

seq1  CACTGAATTGCCCGTGAAAGTCATGTGGTAAATTATATTAATGTGCTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATTGCCCGTGAAAGTCATGTGGTAAATTATATTAATGTGCTCTG  726

seq1  CTTTGTTCAACTATTCTTGGGCCAGTTTGTGTGGTTTCTTGGTATTTCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCAACTATTCTTGGGCCAGTTTGTGTGGTTTCTTGGTATTTCGG  776

seq1  CCTTCAGTGGCGCTTTAGTTTTGCAGGAAATTATATTTCTCTTTTGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTGGCGCTTTAGTTTTGCAGGAAATTATATTTCTCTTTTGGGTT  826

seq1  CTCTTCTTGGGGACTAATTCAAAAAGTGAAATTTACTGGTATTTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTGGGGACTAATTCAAAAAGTGAAATTTACTGGTATTTTTTTTT  876

seq1  AATTTCACAGAATAATGATGATGTTTTCTTTCTTCTTTTTGCCTTTTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACAGAATAATGATGATGTTTTCTTTCTTCTTTTTGCCTTTTAAT  926

seq1  TTTACTTGTTTACATATTTGGTTTTTAGTGACAGAGTTTCTCTATGCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGTTTACATATTTGGTTTTTAGTGACAGAGTTTCTCTATGCAGC  976

seq1  TCTGGCTCTTTGTAGATCTGGATAGACTCTGAACTCTAGAGATCTGTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTTTGTAGATCTGGATAGACTCTGAACTCTAGAGATCTGTCTC  1026

seq1  TCTTTGTTTCCCACCATGCCTTGCTTAATGATAGTGTTTTCAGGGGCTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTCCCACCATGCCTTGCTTAATGATAGTGTTTTCAGGGGCTTA  1076

seq1  TATTTTTTCCTAGAGTTAGAATGAGGCAAGAATTGATTGAATCAACATTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCCTAGAGTTAGAATGAGGCAAGAATTGATTGAATCAACATTA  1126

seq1  TCTTAGTATATCTTCCTTCAATCTTTAGGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  TCTTAGTATATCTTCCTTCAATCTTTAGGAATTC  1160