BAC Information

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BAC

Clone NameB6Ng01-136F06
Chromosome11 (Build37)
Map Location 5,137,423 - 5,229,562
singlet/doubletdoublet
Overlap geneKremen1, Znrf3
Upstream geneOsm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
Downstream geneLOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F06.bB6Ng01-136F06.g
ACCDH936128DH936129
length1,0871,089
definitionDH936128|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F06, 5' end.DH936129|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,137,423 - 5,138,502)(5,228,469 - 5,229,562)
sequence
gaattcaacctccgacggcctcagggttcagagtgctaggattccagcct
gagccaccatgccagcttacaggaaaaacaggcaaaataacaacgaagct
ccaaatacctcaggagaagacccactcaacatggcagctctctgggaatc
tggatgtccttttgcctttatattgggaacataccaaatgagtaggagaa
agaatgaaacagtaaagaaacgggtctcagggagacaccttagtgggtaa
agtacaaccccaaggaccagagcttagtccccagcacccacgtaaaaagc
caggcatggtgacataggcttatgatcccagtgctaggaatagggagtgg
agacagggggttctctagggctgtgcccagacagtttgcctaacccatca
gtcccaggttccagtgagagagccagtctcagaaaacaaggtggatggct
cccgaggaacaacacccagggttgacctctggcttccactcatgcaagca
cgtatatgcatatgcacatacacataccctcatacatatgaatactcaca
tatgtaaacacaaaaggctggagagactgagtcatgaatcatcgttaaaa
acacactagctggtgtgaatcatagcactgtgaattaaagagctatgggt
ggtagctaaccagtgatctactattattttccagagacattggaataata
ataccaaataataccaaatatggaaattcttcttttggttttttgttgtt
gttgttttgagacagggtttctctgtgttgtcttggctgtcctggaactc
actctgtagaccaggctgggccttgaactcacagagatctgcctgtctct
ggctcctgagtgctgggattaaaggagtgtatcaccacctcctggttaat
gggtatttctagttcttaagaaacctcaataaaaaagtggagcctacagg
ccaggggctcaattactcaggtccagatggcagtcagcctttctctgtgc
aggcagggatttcaacagttacttcagtagaattcgttctcatgctcggc
caccgtagcacaagggctcacagtctcatctggaatt
gaattcagtgccctcttcagacctcctcaagtatcagatgcacacttggt
gcacaggcatgcaggcagaatgcttatacacacacaaaataaaaacaatt
taaaaaatagaagaaaaagaataatttgacctcaaatattcatatcaata
gaaagccctcttttattatgacatgcaaacattttctttccaaaatatgt
tagttacttttgggaagctaattcttctgtcattcccttctgtgcctcat
tctctgtacatgatacttcgatacttctattttacattttattgcatttt
gcacattgagatgtatgtatgcagaacctaagccatgaagccaaacagcc
tgtatataaatgataattcccctcagcaaaaagccaggtatctttaagcc
aattagtgtctctttgcctagaattctgcaagtctccttctgtaaagagt
tgtgacggactggcaagatagtttagttaactgcacaagtctgatagcct
aagtttgctcttctaagcccacagtaagaggagagaactaactaaaagtt
atccttccagcctccactctcacatacatgtatatttacacgtaacacat
gtgtgtgtgccaaattcatagaaattcaacttctcctgagcaaatgggag
ttctttcctaaagtgagtttctcattgggtgcaagtttggaagactgtac
agatttattttaaggaatgtatgggtaaatatctcccatatttggctaaa
aagcaagaaaggaatttggtaaaagaaatcaaccagggggaaaagattgg
cttgatatgaatggaaatttttaggaaataccactttgtttttgaagtca
tgaggctggtctgaaagtcagaccttttaagtgattgatgcttttcattt
acaccaaatctccataaagctctgattaaaagaccatatagggctggaag
aggtgaatcagtgctcagagtcaccgacttgctcatccaaaggtcgtgag
ttcaaatcccagcaacctcatgaatggcttcacaccattcgtatgagtct
gaagctctcttctggtggtgtctgaagatcctacagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5137423_5138502
seq2: B6Ng01-136F06.b_47_1130

seq1  GAATTCAACCTCCGACGGCCTCAGGGTTCAGAGTGCTAGGATTCCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCCGACGGCCTCAGGGTTCAGAGTGCTAGGATTCCAGCCT  50

seq1  GAGCCACCATGCCAGCTTACAGGAAAAACAGGCAAAATAACAACGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGCCAGCTTACAGGAAAAACAGGCAAAATAACAACGAAGCT  100

seq1  CCAAATACCTCAGGAGAAGACCCACTCAACATGGCAGCTCTCTGGGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACCTCAGGAGAAGACCCACTCAACATGGCAGCTCTCTGGGAATC  150

seq1  TGGATGTCCTTTTGCCTTTATATTGGGAACATACCAAATGAGTAGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCCTTTTGCCTTTATATTGGGAACATACCAAATGAGTAGGAGAA  200

seq1  AGAATGAAACAGTAAAGAAACGGGTCTCAGGGAGACACCTTAGTGGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAACAGTAAAGAAACGGGTCTCAGGGAGACACCTTAGTGGGTAA  250

seq1  AGTACAACCCCAAGGACCAGAGCTTAGTCCCCAGCACCCACGTAAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAACCCCAAGGACCAGAGCTTAGTCCCCAGCACCCACGTAAAAAGC  300

seq1  CAGGCATGGTGACATAGGCTTATGATCCCAGTGCTAGGAATAGGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGTGACATAGGCTTATGATCCCAGTGCTAGGAATAGGGAGTGG  350

seq1  AGACAGGGGGTTCTCTAGGGCTGTGCCCAGACAGTTTGCCTAACCCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGGGTTCTCTAGGGCTGTGCCCAGACAGTTTGCCTAACCCATCA  400

seq1  GTCCCAGGTTCCAGTGAGAGAGCCAGTCTCAGAAAACAAGGTGGATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGTTCCAGTGAGAGAGCCAGTCTCAGAAAACAAGGTGGATGGCT  450

seq1  CCCGAGGAACAACACCCAGGGTTGACCTCTGGCTTCCACTCATGCAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGAACAACACCCAGGGTTGACCTCTGGCTTCCACTCATGCAAGCA  500

seq1  CGTATATGCATATGCACATACACATACCCTCATACATATGAATACTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATATGCATATGCACATACACATACCCTCATACATATGAATACTCACA  550

seq1  TATGTAAACACAAAAGGCTGGAGAGACTGAGTCATGAATCATCGTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAACACAAAAGGCTGGAGAGACTGAGTCATGAATCATCGTTAAAA  600

seq1  ACACACTAGCTGGTGTGAATCATAGCACTGTGAATTAAAGAGCTATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAGCTGGTGTGAATCATAGCACTGTGAATTAAAGAGCTATGGGT  650

seq1  GGTAGCTAACCAGTGATCTACTATTATTTTCCAGAGACATTGGAATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTAACCAGTGATCTACTATTATTTTCCAGAGACATTGGAATAATA  700

seq1  ATACCAAATAATACCAAATATGGAAATTCTTCTTTTGG-TTTTTGTTGTT  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATACCAAATAATACCAAATATGGAAATTCTTCTTTTGGTTTTTTGTTGTT  750

seq1  GTTGTTTTGAGACAGGGTTTCTCTGTG-TGTCTTGGCTGTCCTGGAACTC  798
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTGTTTTGAGACAGGGTTTCTCTGTGTTGTCTTGGCTGTCCTGGAACTC  800

seq1  ACTCTGTAGACCAGGCT-GGCCTTGAACTCACAGAGATCTGCCTGTCTCT  847
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGGCCTTGAACTCACAGAGATCTGCCTGTCTCT  850

seq1  GGCTCCTGAGTGCTGGGATTAAAGGAGTGTATCACCACCTCCTGGTTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCTCCTGAGTGCTGGGATTAAAGGAGTGTATCACCACCTCCTGGTT-AA  899

seq1  TGGGTATTTCTAGTTCTTAAG-AACCTCAATAAAAAAGTGGAAGCCTACA  946
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TGGGTATTTCTAGTTCTTAAGAAACCTCAATAAAAAAGTGG-AGCCTACA  948

seq1  GGCCAGGGGCTC-AGTACTCAGGCCCCAGATGGCAGTCAGCCTTACTCTG  995
      |||||||||||| | ||||||||  ||||||||||||||||||| |||||
seq2  GGCCAGGGGCTCAATTACTCAGG-TCCAGATGGCAGTCAGCCTTTCTCTG  997

seq1  -GCAGGCAGGAATTTC-ACAG-TACTTCCAGTAGACTCCGTCCTCATGCT  1042
       ||||||||| ||||| |||| ||||| ||||||| | ||| ||||||||
seq2  TGCAGGCAGGGATTTCAACAGTTACTT-CAGTAGAATTCGTTCTCATGCT  1046

seq1  CGGCCA-CGTAGCACCAAGGGCTCAC-GTCTCCATCTGGA  1080
      |||||| ||||||| ||||||||||| |||| ||||||||
seq2  CGGCCACCGTAGCA-CAAGGGCTCACAGTCT-CATCTGGA  1084

seq1: chr11_5228469_5229562
seq2: B6Ng01-136F06.g_70_1158 (reverse)

seq1  ACACTGTAGGGTTCTTCAGACACCA-CAGAAGAGGGCTTCAGACCTCATT  49
      |||||||| || ||||||||||||| |||||||| |||||||| |||| |
seq2  ACACTGTA-GGATCTTCAGACACCACCAGAAGAGAGCTTCAGA-CTCA-T  47

seq1  ACGAATGGTTGTG-AGCCA-TCATGTGGTTGCTGGGATTTGAACTCACGA  97
      |||||||| |||| ||||| ||||| ||||||||||||||||||||||||
seq2  ACGAATGG-TGTGAAGCCATTCATGAGGTTGCTGGGATTTGAACTCACGA  96

seq1  CCTTTGGATGAGC-AGTCGGTG-CTCTTGAGCACTGAGTCACCTC-TCCA  144
      ||||||||||||| |||||||| ||| |||||||||| ||||||| ||||
seq2  CCTTTGGATGAGCAAGTCGGTGACTC-TGAGCACTGATTCACCTCTTCCA  145

seq1  GCCCTAATATAGTCTTTTAATCAAGAGCTTTATGGAAGATTTGGGTGTAA  194
      ||||| |||| ||||||||||| |||||||||||| |||||| |||||||
seq2  GCCCT-ATATGGTCTTTTAATC-AGAGCTTTATGG-AGATTT-GGTGTAA  191

seq1  ATGAAAAGCATCAATCACTTAAAAGGTCTGACTTTCAGACCAGCCTCATG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGCATCAATCACTTAAAAGGTCTGACTTTCAGACCAGCCTCATG  241

seq1  ACTTCAAAAACAAAGTGGTATTTCCTAAAAATTTCCATTCATATCAAGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAAACAAAGTGGTATTTCCTAAAAATTTCCATTCATATCAAGCC  291

seq1  AATCTTTTCCCCCTGGTTTGATTTCTTTTACCAAATTCCTTTCTTGCTTT  344
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AATCTTTTCCCCCTGG-TTGATTTCTTTTACCAAATTCCTTTCTTGC-TT  339

seq1  TTTAGCCAAATATGGGAGATATTTACCCATACATTCCTTAAAATAAATCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAAATATGGGAGATATTTACCCATACATTCCTTAAAATAAATCT  389

seq1  GTACAGTCTTCCAAACTTGCACCCAATGAGAAACTCACTTTAGGAAAGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCTTCCAAACTTGCACCCAATGAGAAACTCACTTTAGGAAAGAA  439

seq1  CTCCCATTTGCTCAGGAGAAGTTGAATTTCTATGAATTTGGCACACACAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTTGCTCAGGAGAAGTTGAATTTCTATGAATTTGGCACACACAC  489

seq1  ATGTGTTACGTGTAAATATACATGTATGTGAGAGTGGAGGCTGGAAGGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTACGTGTAAATATACATGTATGTGAGAGTGGAGGCTGGAAGGAT  539

seq1  AACTTTTAGTTAGTTCTCTCCTCTTACTGTGGGCTTAGAAGAGCAAACTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAGTTAGTTCTCTCCTCTTACTGTGGGCTTAGAAGAGCAAACTT  589

seq1  AGGCTATCAGACTTGTGCAGTTAACTAAACTATCTTGCCAGTCCGTCACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCAGACTTGTGCAGTTAACTAAACTATCTTGCCAGTCCGTCACA  639

seq1  ACTCTTTACAGAAGGAGACTTGCAGAATTCTAGGCAAAGAGACACTAATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTACAGAAGGAGACTTGCAGAATTCTAGGCAAAGAGACACTAATT  689

seq1  GGCTTAAAGATACCTGGCTTTTTGCTGAGGGGAATTATCATTTATATACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAAGATACCTGGCTTTTTGCTGAGGGGAATTATCATTTATATACA  739

seq1  GGCTGTTTGGCTTCATGGCTTAGGTTCTGCATACATACATCTCAATGTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTGGCTTCATGGCTTAGGTTCTGCATACATACATCTCAATGTGC  789

seq1  AAAATGCAATAAAATGTAAAATAGAAGTATCGAAGTATCATGTACAGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAATAAAATGTAAAATAGAAGTATCGAAGTATCATGTACAGAGA  839

seq1  ATGAGGCACAGAAGGGAATGACAGAAGAATTAGCTTCCCAAAAGTAACTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCACAGAAGGGAATGACAGAAGAATTAGCTTCCCAAAAGTAACTA  889

seq1  ACATATTTTGGAAAGAAAATGTTTGCATGTCATAATAAAAGAGGGCTTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTGGAAAGAAAATGTTTGCATGTCATAATAAAAGAGGGCTTTC  939

seq1  TATTGATATGAATATTTGAGGTCAAATTATTCTTTTTCTTCTATTTTTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATATGAATATTTGAGGTCAAATTATTCTTTTTCTTCTATTTTTTA  989

seq1  AATTGTTTTTATTTTGTGTGTGTATAAGCATTCTGCCTGCATGCCTGTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTTATTTTGTGTGTGTATAAGCATTCTGCCTGCATGCCTGTGC  1039

seq1  ACCAAGTGTGCATCTGATACTTGAGGAGGTCTGAAGAGGGCACTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGTGCATCTGATACTTGAGGAGGTCTGAAGAGGGCACTGAATTC  1089