BAC Information

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BAC

Clone NameB6Ng01-136K17
Chromosome11 (Build37)
Map Location 115,150,053 - 115,293,558
singlet/doubletdoublet
Overlap geneFads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr
Downstream gene4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136K17.bB6Ng01-136K17.g
ACCDH936382DH936383
length1,069859
definitionDH936382|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K17, 5' end.DH936383|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,150,053 - 115,151,159)(115,292,706 - 115,293,558)
sequence
gaattcaggacctctgctcactctggttggccccactccctcctgcctaa
aggtttatttattatttattattatatctaagtaagtacactggagctat
cttcagatgcaccagaagatctcattacagatggttgtgagccaccatct
ggttgctgggatttgaactcaggacctttggaagagcagtcagtgctctt
aaccactgagccatctctccagccctggtgtggcttcttaataccactca
gcaacctctgtggtgggtgcctttcggaagattcaacagctccctatgtc
tacagcattcgcaccctgaacagccaagacactttgagagcggtacacac
agggatgggctcccttcactgacactcgggggccctcgaaattctcagag
tttgttctcttaagcatcaggcagcacctgagggtgtcgggaacctcatg
ttaggcccccgggaatattggggagatctgaaagttacagaaccccactg
ctgccagaccaaaactcgaagcgttctcttctggggcctcaccacagtcc
ctcccgtatcctaagagccgttaaagcactcctctgtccacactcaggca
cttgcttttccctgaagagcacgtgaaatcccagatggcagtgacatgcg
tgccatattcggggtctatttgtctaaaaaaatattggagccgggcgtgg
tggcgcacgcctttaatcccagcactcgggaggcagaggcaggcgaattt
ctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagg
gctatacagagaaagactgtctcaaaaacaaaacaaacaaacaaacaaac
aaacaaacaaacaaacaaacaaacaaaagttgtggctatttgagtgactg
attgtttgatggacagcctatgctcagccagacactcagagctggcaggg
accagctgtccctgtatcagccagaggctctagggaaagcgacacttggc
acctcaggtagcctgagtcgcctgctgaggacatgatacccctgctctcc
gctccttctacttttgttt
gaattcactgctttgtcccccaacttgacatcacttgtgggtggggccaa
agctcccttttctaagctctagctctctggacagagcagcttgccccatg
cccttcagtttccttgaatataaccacccaccctttctgtttttctgaaa
gtcgatagaatcgacacctcctttggaaggggggagccacttctgaaggc
agaccatctaatatggtgtggttgataaaatgttacagccactggactcc
cgaggtgacaacactagttgacatgcagggggcctgaatgggtgcacttc
tatagagaagtgatgactcttggagaacagggagccagctgggcacggtc
agccacgtgaggagacagctcaatgctgcctttccagaagtcgccatggt
ggagcccgtgggtagcagctgtgctacagaatggatgcatagatttcata
tctccccctattgagacagggtctctatgtagaccaggctgtccttgaac
ttgcagagatctgcttacctctgcttcgcaggtactcggatgaaaggcaa
tagccaccacacccatcgaatgcagaaaactcttggtgttgaaggtgcca
tgaatgcttggcctgtgttaatccagagacagccttacctgtcttgtgtc
acatgtcagtttaaagtttgtctaggataaaacagacgagaccctggccc
ctctgtcttccataggagaggagaatgtagtttgtgagttccaggctgag
ggcctcaaaaggctttgcagtaccccttcatagaggcacagatccctgcc
tgccagcatctcctgcccaggagatggaggaagtacacaggacttgcccc
cacgtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115150053_115151159
seq2: B6Ng01-136K17.b_49_1117

seq1  GAATTCAGGACCTCTGCTCACTCTGGTTGGCCCCACTCCCTCCTGCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGCTCACTCTGGTTGGCCCCACTCCCTCCTGCCTAA  50

seq1  AGGTTTATTTATTATTTATTATTATATCTAAGTAAGTACACTGGAGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTTATTATTTATTATTATATCTAAGTAAGTACACTGGAGCTAT  100

seq1  CTTCAGATGCACCAGAAGATCTCATTACAGATGGTTGTGAGCCACCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATGCACCAGAAGATCTCATTACAGATGGTTGTGAGCCACCATCT  150

seq1  GGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTT  200

seq1  AACCACTGAGCCATCTCTCCAGCCCTGGTGTGGCTTCTTAATACCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGAGCCATCTCTCCAGCCCTGGTGTGGCTTCTTAATACCACTCA  250

seq1  GCAACCTCTGTGGTGGGTGCCTTTCGGAAGATTCAACAGCTCCCTATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTCTGTGGTGGGTGCCTTTCGGAAGATTCAACAGCTCCCTATGTC  300

seq1  TACAGCATTCGCACCCTGAACAGCCAAGACACTTTGAGAGCGGTACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATTCGCACCCTGAACAGCCAAGACACTTTGAGAGCGGTACACAC  350

seq1  AGGGATGGGCTCCCTTCACTGACACTCGGGGGCCCTCGAAATTCTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGCTCCCTTCACTGACACTCGGGGGCCCTCGAAATTCTCAGAG  400

seq1  TTTGTTCTCTTAAGCATCAGGCAGCACCTGAGGGTGTCGGGAACCTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCTTAAGCATCAGGCAGCACCTGAGGGTGTCGGGAACCTCATG  450

seq1  TTAGGCCCCCGGGAATATTGGGGAGATCTGAAAGTTACAGAACCCCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCCCCGGGAATATTGGGGAGATCTGAAAGTTACAGAACCCCACTG  500

seq1  CTGCCAGACCAAAACTCGAAGCGTTCTCTTCTGGGGCCTCACCACAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGACCAAAACTCGAAGCGTTCTCTTCTGGGGCCTCACCACAGTCC  550

seq1  CTCCCGTATCCTAAGAGCCGTTAAAGCACTCCTCTGTCCACACTCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTATCCTAAGAGCCGTTAAAGCACTCCTCTGTCCACACTCAGGCA  600

seq1  CTTGCTTTTCCCTGAAGAGCACGTGAAATCCCAGATGGCAGTGACATGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTTCCCTGAAGAGCACGTGAAATCCCAGATGGCAGTGACATGCG  650

seq1  TGCCATATTCGGGGTCTATTTGTCTAAAAAAATATTGGAGCCGGGCGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATTCGGGGTCTATTTGTCTAAAAAAATATTGGAGCCGGGCGTGG  700

seq1  TGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGAATTT  750

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  800

seq1  GCTATACAGAGAAAGACTGTCTCAAAAAACAAAACAAAACAAAACAAAAC  850
      ||||||||||||||||||||||| ||||||||||| |||||||   ||||
seq2  GCTATACAGAGAAAGACTGTCTC-AAAAACAAAAC-AAACAAA--CAAAC  846

seq1  AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAGTTGGTGGCT  900
      |||   |||||||   |||||||   |||||||   ||||||| ||||| 
seq2  AAA--CAAACAAA--CAAACAAA--CAAACAAA--CAAAAGTT-GTGGC-  886

seq1  TATTTGAAGTGACCTGATTGTTTTGATGGACAAGCCTATGCTCAGCCCAG  950
      |||||| ||||| ||||||| |||||||||| ||||||||||||| ||||
seq2  TATTTG-AGTGA-CTGATTG-TTTGATGGAC-AGCCTATGCTCAG-CCAG  931

seq1  ACCACTCAGAGCTGGGCAGGGACCAGCTGTTCCCTGGAACCAGCCAGAGG  1000
      | ||||||||||| ||||||||||||||| ||||| | | |||||||| |
seq2  A-CACTCAGAGCT-GGCAGGGACCAGCTG-TCCCT-GTATCAGCCAGA-G  976

seq1  GCTCTTAGGGGAAAGCGGACACTGGGCACCTCAGTGTAGCCTGAGGTCGC  1050
      |||||   |||||||| |||||| |||||||||| ||||||||| |||| 
seq2  GCTCT--AGGGAAAGC-GACACTTGGCACCTCAG-GTAGCCTGA-GTCG-  1020

seq1  CCTGCCTGAGGGACAATGATTACCCCTGCTCTCCGCTTTCCTTCTTACTT  1100
      |||| |||| |||| |||| ||||||||||||||||  |||||| ||| |
seq2  CCTG-CTGA-GGAC-ATGA-TACCCCTGCTCTCCGC--TCCTTC-TAC-T  1062

seq1  TTTGTTT  1107
      |||||||
seq2  TTTGTTT  1069

seq1: chr11_115292706_115293558
seq2: B6Ng01-136K17.g_69_927 (reverse)

seq1  ACTCACGTGGTGGC-AGT-CTGTGTACTTCCTCCATCTCCTGGGCAGGAG  48
      |||||||||| ||| ||| |||||||||||||||||||||||||||||||
seq2  ACTCACGTGGGGGCAAGTCCTGTGTACTTCCTCCATCTCCTGGGCAGGAG  50

seq1  ATGCTGGCAGGCAGGGATCTGTGCCTCTATGAA-GGGTACTGCAAAGCCT  97
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGCTGGCAGGCAGGGATCTGTGCCTCTATGAAGGGGTACTGCAAAGCCT  100

seq1  CTTGAGGCCCTCAGCCTGGAACTCAC-AACTACATTCTCCTCTCCTATGG  146
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGAGGCCCTCAGCCTGGAACTCACAAACTACATTCTCCTCTCCTATGG  150

seq1  AAGACAGAGGGGCCAGGGTCTCGTCTG-TTTATCCTAGAC-AACTTTAAA  194
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AAGACAGAGGGGCCAGGGTCTCGTCTGTTTTATCCTAGACAAACTTTAAA  200

seq1  CTGACATGTGACACAAGACAGGTAAGGCTGTCTCTGGATTAACACAGGCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGTGACACAAGACAGGTAAGGCTGTCTCTGGATTAACACAGGCC  250

seq1  AAGCATTCATGGCACCTTCAACACCAAGAGTTTTCTGCATTCGATGGGTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCATGGCACCTTCAACACCAAGAGTTTTCTGCATTCGATGGGTG  300

seq1  TGGTGGCTATTGCCTTTCATCCGAGTACCTGCGAAGCAGAGGTAAGCAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTATTGCCTTTCATCCGAGTACCTGCGAAGCAGAGGTAAGCAGA  350

seq1  TCTCTGCAAGTTCAAGGACAGCCTGGTCTACATAGAGACCCTGTCTCAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAAGTTCAAGGACAGCCTGGTCTACATAGAGACCCTGTCTCAAT  400

seq1  AGGGGGAGATATGAAATCTATGCATCCATTCTGTAGCACAGCTGCTACCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGATATGAAATCTATGCATCCATTCTGTAGCACAGCTGCTACCC  450

seq1  ACGGGCTCCACCATGGCGACTTCTGGAAAGGCAGCATTGAGCTGTCTCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTCCACCATGGCGACTTCTGGAAAGGCAGCATTGAGCTGTCTCCT  500

seq1  CACGTGGCTGACCGTGCCCAGCTGGCTCCCTGTTCTCCAAGAGTCATCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGCTGACCGTGCCCAGCTGGCTCCCTGTTCTCCAAGAGTCATCAC  550

seq1  TTCTCTATAGAAGTGCACCCATTCAGGCCCCCTGCATGTCAACTAGTGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATAGAAGTGCACCCATTCAGGCCCCCTGCATGTCAACTAGTGTT  600

seq1  GTCACCTCGGGAGTCCAGTGGCTGTAACATTTTATCAACCACACCATATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCGGGAGTCCAGTGGCTGTAACATTTTATCAACCACACCATATT  650

seq1  AGATGGTCTGCCTTCAGAAGTGGCTCCCCCCTTCCAAAGGAGGTGTCGAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCTGCCTTCAGAAGTGGCTCCCCCCTTCCAAAGGAGGTGTCGAT  700

seq1  TCTATCGACTTTCAGAAAAACAGAAAGGGTGGGTGGTTATATTCAAGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCGACTTTCAGAAAAACAGAAAGGGTGGGTGGTTATATTCAAGGAA  750

seq1  ACTGAAGGGCATGGGGCAAGCTGCTCTGTCCAGAGAGCTAGAGCTTAGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGCATGGGGCAAGCTGCTCTGTCCAGAGAGCTAGAGCTTAGAA  800

seq1  AAGGGAGCTTTGGCCCCACCCACAAGTGATGTCAAGTTGGGGGACAAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCTTTGGCCCCACCCACAAGTGATGTCAAGTTGGGGGACAAAGC  850

seq1  AGTGAATTC  853
      |||||||||
seq2  AGTGAATTC  859