BAC Information

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BAC

Clone NameB6Ng01-136L04
Chromosome11 (Build37)
Map Location 41,052,456 - 41,175,983
singlet/doubletdoublet
Overlap geneLOC100039285
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneHspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L04.bB6Ng01-136L04.g
ACCDH936404DH936405
length1,1971,169
definitionDH936404|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L04, 5' end.DH936405|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,052,456 - 41,053,653)(41,174,808 - 41,175,983)
sequence
gaattcaaccaataaccctgaaaagactgtacatgccagtcttagtgctc
ctgcatgctaatgtccctgagatatgctctactctccttgattagttgct
tcccactttgtcccattgtactggctgtgttccatttgttgcttgcaaat
agtatatataagttgctggacttcttcataagtttgcttgtcataaatta
cagcttgtacaagacatcctgagcctactagttctgtcttctttatcttt
aatcccctagatattcctactcaggatgctgtcactaaaaaatgatctgt
tggcactaactagaagatttcttaccttgtagtgttatggaaggaattag
aaaaaaaccaatacccttcagtatctgataattctttgaattatttttta
ttaatttgaatgaatatatttatatagtttttatatattcataggagttc
ttttctttgaggcttttgaaattgcagttttgagacatatttcttttgta
ttttgtaaaactggaacaaagaaaagacatactttggagtaataacaaag
aaaagtattctacatgttttctattccatatgtggcattaatgacaattg
atctcagttaacattgaggatcaccttaataggattaagaagcctcaatg
ggagtgtatatgtaaggagtacacagagaggttcaactcagggacaagac
tctgctaggatgcacacagcagcactccatggatggagtgagatggacaa
agtatataggcagctagcacaggcatccctgttctctgctccctcatgaa
agctgttttgcactgccaggggctctctgaaaccttggaaacaagtaggc
taaagtaaatatttcttttatttttctcagcatttgtcaatgggaaataa
acacattaaggtaactatcataaataattcctcacattttccagttctta
aaacaacacttttccttgtttcttaatgtgactgtttttattctgttctg
gggatcaaacctcagtcctcacagatcatctgtgagacttatcacggagc
atacatgcatcttgaatcttttcgtcttttaaataaagaatttctgttgt
ttctcttcgcttgatgtagtgattgctaggttctttatacaaaagaaagc
cactcctgtataatgaattattaaccctacatccgaacctttcagaa
gaattcctctcgttactggaactatgttctacatctccatgacaatgttt
tctcctgattttataacttcgatggacaccacttcacattagtgaaaaat
tggcaccaacttggactgtgtaggaaatcacatggacaggggcatagtaa
gcctgatttgactatcatcccaaaaggaaaaagagccatgtagttaacta
tttgagcatccaaagattatctgaatctcaaattgtttccaaggactcag
cacctacttcgtaccttatcatcttgttcaaggaccatgacattagcatt
aagacaagaaaaaaagaaaagaattactgaatctgagagttacttctctg
aaacatttagtagtgctttataaacagaaacactacagtgcatcaactcc
aaataaccttcagaacaaaacctaaatcatttccggtttagagggatgta
aaaatatggatatatgatagaatttggtaaatattaatttcccctaattt
aattttcacatgccagaggtacagagtaaagacgttaaaattcagggaac
aaccttatacctgtgtgaattaaccttcatccctgtgagaggttgtgaag
atggcattcacaaacaattctctggaccatacattttaatacatggttga
tttgagctttttcaaagtgaacagaggatctgtttccttgaaatttcact
atatatgtgacttataaatgaaaatcttttctgtttcccaaaagattcgt
gttttctctttaggaagctataaatttcacatgtgcaaggtctagtttat
ggaaatagtgatcaaatactttacctgtgaacaccgattcttctttaaaa
ggcacaacaaaatactaaaaaaaagtatgcagtccattaagaaactgaga
acactggtatgtttacataataattaatcataagaaatcaccattctttg
tctaacaatagtaaaaggcttaatgctacttttatgtttcatagaaaagt
aatgccatgttttcaatataaactataatgtgtagacttcaggaacaaat
atcattgaaaaatccctcatcatgaacatcttttgccccttggttttcag
aaggacttctgtgtagtcctggctgttactggagctcactctgtagacca
gaactagccgatttcgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41052456_41053653
seq2: B6Ng01-136L04.b_48_1244

seq1  GAATTCAACCAATAACCCTGAAAAGACTGTACATGCCAGTCTTAGTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAATAACCCTGAAAAGACTGTACATGCCAGTCTTAGTGCTC  50

seq1  CTGCATGCTAATGTCCCTGAGATATGCTCTACTCTCCTTGATTAGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTAATGTCCCTGAGATATGCTCTACTCTCCTTGATTAGTTGCT  100

seq1  TCCCACTTTGTCCCATTGTACTGGCTGTGTTCCATTTGTTGCTTGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTGTCCCATTGTACTGGCTGTGTTCCATTTGTTGCTTGCAAAT  150

seq1  AGTATATATAAGTTGCTGGACTTCTTCATAAGTTTGCTTGTCATAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATAAGTTGCTGGACTTCTTCATAAGTTTGCTTGTCATAAATTA  200

seq1  CAGCTTGTACAAGACATCCTGAGCCTACTAGTTCTGTCTTCTTTATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTACAAGACATCCTGAGCCTACTAGTTCTGTCTTCTTTATCTTT  250

seq1  AATCCCCTAGATATTCCTACTCAGGATGCTGTCACTAAAAAATGATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTAGATATTCCTACTCAGGATGCTGTCACTAAAAAATGATCTGT  300

seq1  TGGCACTAACTAGAAGATTTCTTACCTTGTAGTGTTATGGAAGGAATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTAACTAGAAGATTTCTTACCTTGTAGTGTTATGGAAGGAATTAG  350

seq1  AAAAAAACCAATACCCTTCAGTATCTGATAATTCTTTGAATTATTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAATACCCTTCAGTATCTGATAATTCTTTGAATTATTTTTTA  400

seq1  TTAATTTGAATGAATATATTTATATAGTTTTTATATATTCATAGGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGAATGAATATATTTATATAGTTTTTATATATTCATAGGAGTTC  450

seq1  TTTTCTTTGAGGCTTTTGAAATTGCAGTTTTGAGACATATTTCTTTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGAGGCTTTTGAAATTGCAGTTTTGAGACATATTTCTTTTGTA  500

seq1  TTTTGTAAAACTGGAACAAAGAAAAGACATACTTTGGAGTAATAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAAACTGGAACAAAGAAAAGACATACTTTGGAGTAATAACAAAG  550

seq1  AAAAGTATTCTACATGTTTTCTATTCCATATGTGGCATTAATGACAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTCTACATGTTTTCTATTCCATATGTGGCATTAATGACAATTG  600

seq1  ATCTCAGTTAACATTGAGGATCACCTTAATAGGATTAAGAAGCCTCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTAACATTGAGGATCACCTTAATAGGATTAAGAAGCCTCAATG  650

seq1  GGAGTGTATATGTAAGGAGTACACAGAGAGGTTCAACTCAGGGACAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTATATGTAAGGAGTACACAGAGAGGTTCAACTCAGGGACAAGAC  700

seq1  TCTGCTAGGATGCACACAGCAGCACTCCATGGATGGAGTGAGATGGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGGATGCACACAGCAGCACTCCATGGATGGAGTGAGATGGACAA  750

seq1  AGTATATAGGCAGCTAGCACAGGCATCCCTGTTCTCTGCTCCCTCATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAGGCAGCTAGCACAGGCATCCCTGTTCTCTGCTCCCTCATGAA  800

seq1  AGCTGTTTTGCACTGCCAGGGGCTCTCTGAAACCTTGGAAACAAGTAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTTGCACTGCCAGGGGCTCTCTGAAACCTTGGAAACAAGTAGGC  850

seq1  TAAAGTAAATATTTCTTTTATTTTTCTCAGGCATTTGTCAATGGGAAATA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAAGTAAATATTTCTTTTATTTTTCTCA-GCATTTGTCAATGGGAAATA  899

seq1  AACACATTAAGGTAACTATCATAAATAATTCCTCACATTTTCCAGTTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTAAGGTAACTATCATAAATAATTCCTCACATTTTCCAGTTCTT  949

seq1  AAAAACAACACTTTTCCTTGTTTCTTAATGTGACTGTTTTTATTCTGTTC  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAACAACACTTTTCCTTGTTTCTTAATGTGACTGTTTTTATTCTGTTC  998

seq1  TGGGGATCAAACCTCAGCCCTCACAGATCATCTGTGAGGACTTATCACGG  1050
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TGGGGATCAAACCTCAGTCCTCACAGATCATCTGTGA-GACTTATCACGG  1047

seq1  AGCCATACATGCATCTTGAATCTTTTTCGTCTTTTAAAATAAAGATATTC  1100
      || ||||||||||||||||||| |||||||||||| |||||||||  |||
seq2  AG-CATACATGCATCTTGAATC-TTTTCGTCTTTT-AAATAAAGAATTTC  1094

seq1  TGTTGTTTCTCTTCGCTTGATGTAGTTGATGCTTTAGTTTCTTTATACAA  1150
      ||||||||||||||||||||||||||   |||  ||| ||||||||||||
seq2  TGTTGTTTCTCTTCGCTTGATGTAGTGATTGC--TAGGTTCTTTATACAA  1142

seq1  AAG-AAGCAACTCCTG-ATAATGGTATTATATACACCCTACA--------  1190
      ||| |||| ||||||| ||||| | ||||| || ||||||||        
seq2  AAGAAAGCCACTCCTGTATAAT-GAATTAT-TA-ACCCTACATCCGAACC  1189

seq1  ATTCAGAA  1198
       |||||||
seq2  TTTCAGAA  1197

seq1: chr11_41174808_41175983
seq2: B6Ng01-136L04.g_66_1234 (reverse)

seq1  ATTCGA----GGCTAG-TCTGGTCTACAGAGTGAGCTCCAGT-ACAGCCA  44
      ||||||    |||||| ||||||||||||||||||||||||| |||||||
seq2  ATTCGAAATCGGCTAGTTCTGGTCTACAGAGTGAGCTCCAGTAACAGCCA  50

seq1  GGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAGGGGCAAAAAAAGG  94
      |||||||||  ||||  |||   ||  |||||| |||||||||||    |
seq2  GGACTACAC--AGAAGTCCT---TCTGAAAACC-AAGGGGCAAAA----G  90

seq1  ATGTTCATGATGAGGGGATTTTTCAATGATATTTGTTCCTGAAGTCTACA  144
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGATGA-GGGATTTTTCAATGATATTTGTTCCTGAAGTCTACA  139

seq1  CA-TATAGTTTATATTGAAAAACATGGCATTACTTTTCTTATGAAACATA  193
      || |||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CATTATAGTTTATATTG-AAAACATGGCATTACTTTTC-TATGAAACATA  187

seq1  AAAGTAGCATTAAGCCTTTTACTTATTGTTAGACAAAGAATGGTGATTTC  243
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGTAGCATTAAGCCTTTTAC-TATTGTTAGACAAAGAATGGTGATTTC  236

seq1  TTATGATTAATTATTATGTAAACATACCAGTGTTCTCAGTTTCTTAATGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTAATTATTATGTAAACATACCAGTGTTCTCAGTTTCTTAATGG  286

seq1  ACTGCATACTTTTTTTTAGTATTTTGTTGTGCCTTTTAAAGAAGAATCGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATACTTTTTTTTAGTATTTTGTTGTGCCTTTTAAAGAAGAATCGG  336

seq1  TGTTCACAGGTAAAGTATTTGATCACTATTTCCATAAACTAGACCTTGCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAGGTAAAGTATTTGATCACTATTTCCATAAACTAGACCTTGCA  386

seq1  CATGTGAAATTTATAGCTTCCTAAAGAGAAAACACGAATCTTTTGGGAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAATTTATAGCTTCCTAAAGAGAAAACACGAATCTTTTGGGAAA  436

seq1  CAGAAAAGATTTTCATTTATAAGTCACATATATAGTGAAATTTCAAGGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGATTTTCATTTATAAGTCACATATATAGTGAAATTTCAAGGAA  486

seq1  ACAGATCCTCTGTTCACTTTGAAAAAGCTCAAATCAACCATGTATTAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTCTGTTCACTTTGAAAAAGCTCAAATCAACCATGTATTAAAA  536

seq1  TGTATGGTCCAGAGAATTGTTTGTGAATGCCATCTTCACAACCTCTCACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTCCAGAGAATTGTTTGTGAATGCCATCTTCACAACCTCTCACA  586

seq1  GGGATGAAGGTTAATTCACACAGGTATAAGGTTGTTCCCTGAATTTTAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAGGTTAATTCACACAGGTATAAGGTTGTTCCCTGAATTTTAAC  636

seq1  GTCTTTACTCTGTACCTCTGGCATGTGAAAATTAAATTAGGGGAAATTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTCTGTACCTCTGGCATGTGAAAATTAAATTAGGGGAAATTAA  686

seq1  TATTTACCAAATTCTATCATATATCCATATTTTTACATCCCTCTAAACCG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCAAATTCTATCATATATCCATATTTTTACATCCCTCTAAACCG  736

seq1  GAAATGATTTAGGTTTTGTTCTGAAGGTTATTTGGAGTTGATGCACTGTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATTTAGGTTTTGTTCTGAAGGTTATTTGGAGTTGATGCACTGTA  786

seq1  GTGTTTCTGTTTATAAAGCACTACTAAATGTTTCAGAGAAGTAACTCTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGTTTATAAAGCACTACTAAATGTTTCAGAGAAGTAACTCTCA  836

seq1  GATTCAGTAATTCTTTTCTTTTTTTCTTGTCTTAATGCTAATGTCATGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTAATTCTTTTCTTTTTTTCTTGTCTTAATGCTAATGTCATGGT  886

seq1  CCTTGAACAAGATGATAAGGTACGAAGTAGGTGCTGAGTCCTTGGAAACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACAAGATGATAAGGTACGAAGTAGGTGCTGAGTCCTTGGAAACA  936

seq1  ATTTGAGATTCAGATAATCTTTGGATGCTCAAATAGTTAACTACATGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATTCAGATAATCTTTGGATGCTCAAATAGTTAACTACATGGCT  986

seq1  CTTTTTCCTTTTGGGATGATAGTCAAATCAGGCTTACTATGCCCCTGTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTTTTGGGATGATAGTCAAATCAGGCTTACTATGCCCCTGTCC  1036

seq1  ATGTGATTTCCTACACAGTCCAAGTTGGTGCCAATTTTTCACTAATGTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTTCCTACACAGTCCAAGTTGGTGCCAATTTTTCACTAATGTGA  1086

seq1  AGTGGTGTCCATCGAAGTTATAAAATCAGGAGAAAACATTGTCATGGAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTCCATCGAAGTTATAAAATCAGGAGAAAACATTGTCATGGAGA  1136

seq1  TGTAGAACATAGTTCCAGTAACGAGAGGAATTC  1176
      |||||||||||||||||||||||||||||||||
seq2  TGTAGAACATAGTTCCAGTAACGAGAGGAATTC  1169