BAC Information

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BAC

Clone NameB6Ng01-136M21
Chromosome11 (Build37)
Map Location 102,546,413 - 102,681,127
singlet/doubletdoublet
Overlap geneCcdc43, Adam11, Gja7
Upstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456
Downstream geneHigd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M21.bB6Ng01-136M21.g
ACCDH936482DH936483
length1,135654
definitionDH936482|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M21, 5' end.DH936483|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,546,413 - 102,547,568)(102,680,474 - 102,681,127)
sequence
gaattctgtccaccctttcctctcccaggttttccattcactcatctcat
aagcttaaccaccaactatatacttttaagtattgtgttagcaaaatttc
cagtgtttttctctaaaagagtaattccttcagtttctttaagccaggaa
ttattaggtcttactattcatgttgcaggtgtgtccaacccgaggtcaag
gacagctataaattcagcctaacacaaaatcataacatttaaaacatgat
tttttttgcaagtttttaacaaagccaagtcacaatgtcaaaaggtagga
catgcctgcaggataaatcaagatagaaaatcaagaggggagtcaaggga
actcatgattacaaaaagaaaaaaagaaactctacctaacaaaatgataa
tccttatactccaatcatcttcttgaaatcacagattacatgaaaaatac
atagctctctatttaaaaagataattgtttttcccacaggttaagtcttt
cttccatactggggcccagtcccaggcccttgtatatgctaagcaggcac
gcaacacaactacagcctgagcccaagttgacacattaaaaaaaaacaaa
aacttagatcacattccaaataatttcctccacttccctaatttgatgtc
agaaagtctggatctaggcagggcccttcattagctctttcagcctcaaa
atagttacaagccaggtgtggagatctatgtccataatcctgaagctgag
aaaaaaaggacactgtaacaagttcagggctagcctgggctacagaatga
aacccagtctcaaaacaaaagcccattatattttagggcaaatagtgcct
cagaagcaatttgtacttttttttaaactcagaatggtcatgtttccttc
agatgtgagctttctgtatctggctaaatatacaaaatgagggaagacct
ttttaaaaaaacggcacaggagttcagtactaaaatagaaaggctaccct
actccagatctttggtaagatctaacaatatgactgccccacccacagag
catggcacatttacagtgattgtgaattctttcaacatgtaacacgggga
aagccttaggaattggaaatacatagtctcagttc
gaattcctgtccatgtgcatttcaagtcttgtaattgggatcccgctggg
atgcaaggagttaagaggaaatggcctattagggtcttactaatccgaga
aatccaggacctcaaaactatgcagaacgcctgtaaaaaccatgattcca
ccaggcggggatggttggccgagaagccccggaggtttttcgagcaactg
cagagcagagcctagaacggccatgagcatcccgagatccgctggaccaa
ggccctgacctagcgcacgagataacggtggagctctgcggtccgaccct
ggaaactcaggtgaggcgtgtctccatcacgctgtcactggccggctcct
ccggggaatcacgccacaggaaatgagcccgcggcgctcgaagtcagccg
cccaccggggctccccgcgcaggggtcctcccgccaccgcgcgccccgcc
gcgtacgggaccgcccgggaacgcgcgcggccggtcatggaaagttggcg
ccggcgcggggccgcgcgctccgggcgccccctcccactcgaggcgcacg
tgctgccgcgcccccgctcccaggccgagactggacgcccccactcccac
cgcggcacgcagtgcgcaggcgcctccccgcgggtcccggcggcgggagc
ggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102546413_102547568
seq2: B6Ng01-136M21.b_47_1181

seq1  GAATTCTGTCCACCCTTTCCTCTCCCAGGTTTTCCATTCACTCATCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCACCCTTTCCTCTCCCAGGTTTTCCATTCACTCATCTCAT  50

seq1  AAGCTTAACCACCAACTATATACTTTTAAGTATTGTGTTAGCAAAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAACCACCAACTATATACTTTTAAGTATTGTGTTAGCAAAATTTC  100

seq1  CAGTGTTTTTCTCTAAAAGAGTAATTCCTTCAGTTTCTTTAAGCCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTTCTCTAAAAGAGTAATTCCTTCAGTTTCTTTAAGCCAGGAA  150

seq1  TTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCAACCCGAGGTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGTCTTACTATTCATGTTGCAGGTGTGTCCAACCCGAGGTCAAG  200

seq1  GACAGCTATAAATTCAGCCTAACACAAAATCATAACATTTAAAACATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTATAAATTCAGCCTAACACAAAATCATAACATTTAAAACATGAT  250

seq1  TTTTTTTGCAAGTTTTTAACAAAGCCAAGTCACAATGTCAAAAGGTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCAAGTTTTTAACAAAGCCAAGTCACAATGTCAAAAGGTAGGA  300

seq1  CATGCCTGCAGGATAAATCAAGATAGAAAATCAAGAGGGGAGTCAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGCAGGATAAATCAAGATAGAAAATCAAGAGGGGAGTCAAGGGA  350

seq1  ACTCATGATTACAAAAAGAAAAAAAGAAACTCTACCTAACAAAATGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGATTACAAAAAGAAAAAAAGAAACTCTACCTAACAAAATGATAA  400

seq1  TCCTTATACTCCAATCATCTTCTTGAAATCACAGATTACATGAAAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATACTCCAATCATCTTCTTGAAATCACAGATTACATGAAAAATAC  450

seq1  ATAGCTCTCTATTTAAAAAGATAATTGTTTTTCCCACAGGTTAAGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTCTATTTAAAAAGATAATTGTTTTTCCCACAGGTTAAGTCTTT  500

seq1  CTTCCATACTGGGGCCCAGTCCCAGGCCCTTGTATATGCTAAGCAGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACTGGGGCCCAGTCCCAGGCCCTTGTATATGCTAAGCAGGCAC  550

seq1  GCAACACAACTACAGCCTGAGCCCAAGTTGACACATTAAAAAAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACAACTACAGCCTGAGCCCAAGTTGACACATTAAAAAAAAACAAA  600

seq1  AACTTAGATCACATTCCAAATAATTTCCTCCACTTCCCTAATTTGATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGATCACATTCCAAATAATTTCCTCCACTTCCCTAATTTGATGTC  650

seq1  AGAAAGTCTGGATCTAGGCAGGGCCCTTCATTAGCTCTTTCAGCCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCTGGATCTAGGCAGGGCCCTTCATTAGCTCTTTCAGCCTCAAA  700

seq1  ATAGTTACAAGCCAGGTGTGGAGATCTATGTCCATAATCCTGAAGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACAAGCCAGGTGTGGAGATCTATGTCCATAATCCTGAAGCTGAG  750

seq1  AAAAAAAGGACACTGTAACAAGTTCAGGGCTAGCCTGGGCTACAGAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGACACTGTAACAAGTTCAGGGCTAGCCTGGGCTACAGAATGA  800

seq1  AACCCAGTCTCAAAACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTCTCAAAACAAAAGCCCATTATATTTTAGGGCAAATAGTGCCT  850

seq1  CAGAAGCAATTTGTACTTTTTTTTAAACTCAGAATGGTCATGTTTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAATTTGTACTTTTTTTTAAACTCAGAATGGTCATGTTTCCTTC  900

seq1  AGGATGTGAGCTTTCTGTATCTGGCTAAATATACAAAATGAGGGAAGACC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GATGTGAGCTTTCTGTATCTGGCTAAATATACAAAATGAGGGAAGACC  949

seq1  TTTTTAAAAAAGAAGGGCACAGGAGTTCAGTACTAAAATAGAAAGGCTAC  1000
      ||||||||||  || |||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAA--AACGGCACAGGAGTTCAGTACTAAAATAGAAAGGCTAC  997

seq1  CCTAACTCCAGATCTTTGGTAAAGATTCTAACAATAATTGACTGCCCACA  1050
      ||| |||||||||||||||| |||| ||||||||||  ||||||||| ||
seq2  CCT-ACTCCAGATCTTTGGT-AAGA-TCTAACAATA--TGACTGCCC-CA  1041

seq1  CCACCAGAGCATGGCACATTTACAAGTGATTGTGATTTTCCTTTTCAACA  1100
      ||  ||||||||||||||||||| ||||||||||| ||    ||||||||
seq2  CCCACAGAGCATGGCACATTTAC-AGTGATTGTGAATT---CTTTCAACA  1087

seq1  TGTAAACAACGGGGGAAAGCCTTAGGAAATTTTGGAAAATACATTAGTCT  1150
      ||| ||||   |||||||||||||||||   |||| ||||||| ||||||
seq2  TGT-AACA--CGGGGAAAGCCTTAGGAA---TTGG-AAATACA-TAGTCT  1129

seq1  CAGTTC  1156
      ||||||
seq2  CAGTTC  1135

seq1: chr11_102680474_102681127
seq2: B6Ng01-136M21.g_72_725 (reverse)

seq1  TCCCGCTCCCGCCGCCGGGACCCGCGGGGAGGCGCCTGCGCACTGCGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTCCCGCCGCCGGGACCCGCGGGGAGGCGCCTGCGCACTGCGTGC  50

seq1  CGCGGTGGGGGTGGGGGCGTCCCGTCTCGGCCTGGGAGCGGGGGCGCGGC  100
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CGCGGTGGGAGTGGGGGCGTCCAGTCTCGGCCTGGGAGCGGGGGCGCGGC  100

seq1  TGCACGTGCGCCTCGAGTGGGAGGGGGCGCCCGGAGCGCGCGGCCCCGCG  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGCGCCTCGAGTGGGAGGGGGCGCCCGGAGCGCGCGGCCCCGCG  150

seq1  CCGGCGCCAACTTTCCGTGACCGGCCGCGCGCGTTCCCGGGCGGTCCCGT  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCGGCGCCAACTTTCCATGACCGGCCGCGCGCGTTCCCGGGCGGTCCCGT  200

seq1  ACGCGGCGGGGCGCGCGGTGGCGGGAGGACCCCTGCGCGGGGAGCCCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGCGGGGCGCGCGGTGGCGGGAGGACCCCTGCGCGGGGAGCCCCGG  250

seq1  TGGGCGGCTGACTTCGAGCGCCGCGGGCTCATTTCCTGTGGCGTGATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGCTGACTTCGAGCGCCGCGGGCTCATTTCCTGTGGCGTGATTCC  300

seq1  CCGGAGGAGCCGGCCAGTGACAGCGTGATGGAGACACGCCTCACCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGGAGCCGGCCAGTGACAGCGTGATGGAGACACGCCTCACCTGAGT  350

seq1  TTCCAGGGTCGGACCGCAGAGCTCCACCGTTATCTCGTGCGCTAGGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGTCGGACCGCAGAGCTCCACCGTTATCTCGTGCGCTAGGTCAG  400

seq1  GGCCTTGGTCCAGCGGATCTCGGGATGCTCATGGCCGTTCTAGGCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTCCAGCGGATCTCGGGATGCTCATGGCCGTTCTAGGCTCTGC  450

seq1  TCTGCAGTTGCTCGAAAAACCTCCGGGGCTTCTCGGCCAACCATCCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTTGCTCGAAAAACCTCCGGGGCTTCTCGGCCAACCATCCCCGC  500

seq1  CTGGTGGAATCATGGTTTTTACAGGCGTTCTGCATAGTTTTGAGGTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAATCATGGTTTTTACAGGCGTTCTGCATAGTTTTGAGGTCCTG  550

seq1  GATTTCTCGGATTAGTAAGACCCTAATAGGCCATTTCCTCTTAACTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCGGATTAGTAAGACCCTAATAGGCCATTTCCTCTTAACTCCTT  600

seq1  GCATCCCAGCGGGATCCCAATTACAAGACTTGAAATGCACATGGACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCAGCGGGATCCCAATTACAAGACTTGAAATGCACATGGACAGGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654