BAC Information

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BAC

Clone NameB6Ng01-136O20
Chromosome11 (Build37)
Map Location 105,832,614 - 105,833,716
singlet/doubletsinglet
Overlap geneAce
Upstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561
Downstream geneEG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136O20.bB6Ng01-136O20.g
ACCDH936573DH936574
length1,2341,085
definitionDH936573|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O20, 5' end.DH936574|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcatgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcaatccgtgaatggtggttttagcagaggcattatgtgcag
gaaaggcaaatccataaccagaataagtatcaactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaatctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccataaccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgattgtccacagaacaggtcatcttatcc
acttgattattgaactcctcctcggccgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcactgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcagggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagtcgatcatagggaacaccccatgag
gctatagcgcatgcttggcagcagatggcattgtaacagagtagaaacca
taggcatttgagcaacttcttcatgtactgcttggtgccttcaggacctg
cttctggcccgatcacgtatataccacttcatttgataataaaactgctg
cctgtgcccgtctcacttatgactgcagtctgaatgtacccagctcttgt
gaagggggagatcaggtgcatgtacttgggttctatgtcaacggtcaggt
ccattaggggcccattagccagagccacgaaact
gaattcctctgatacccggaacatgtgtgtggcgttccagccctggccag
caggcagggaaacaggtcaggaggcagccgtatggagccatgccttgagc
tcagggcttgtgacttccacccaggacaggaaaggtatctgaggctcagt
ggcctcacttcccaaaggcagggcactactgaccacagcagatcactctg
ccaccttaggtcactgttgactattgcagaaaaggggaggggccccatgc
ctatcacatgacccccaactcctgtctcattgacctaccttctgtaccat
tgtactggtgacatcgaggttgggtttgtctgggaaaggcactaccatgt
cgtagatgttctcccagctctgggcccacatgtctcctacagggaagaag
caagtgggacagtttggtctcctgctcaaccattcccattatgtatgcta
tcctgtgtgggtgtcggcacctatatacccttgggccaaaggacatgtcc
cctgactctgtgggctccacaggactggttactggtgtcttttccgatta
tgccaggatccttcactaaggggccacaggcttccaggcttccaggctcc
cagactcatgtcctcaggtatggtccacaataaggctgctgctaaccctg
accctgaagccaaagccatcgacttgacccctagctctgctctattccag
ttttccattggctctaaattcttggctctaaataaacctcagtctctaaa
gcaggattccagcttggtggggacattgagccatggggggcttccgtgta
aggaagcaaaggttatgacattccacatgcctgaggcactgtgagggtga
cccatcgtccctcttctaggcatcctcctgcacccgagctcctctgggca
gcaaggttcaggttctacccagcaaatgggcaggatagcccctgagattg
acgtattgtcccatagcggcggtgcagtgcgcggcgacgtaggcatgagg
tcagtagagggctctagtggtgtagatatgttcaagaactctcctcagga
gggggactcatacaggagcgccgaagtcctgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105832614_105833716
seq2: B6Ng01-136O20.g_70_1154 (reverse)

seq1  GACACAGGAGCCTTCTGGCGCTCCTGGTATGAGTCCCCCTCCTTTGAGGA  50
      |||||||||  |||| ||||||||| ||||||||||||||||  ||||||
seq2  GACACAGGA--CTTC-GGCGCTCCT-GTATGAGTCCCCCTCC--TGAGGA  44

seq1  GAG-TCTGGAACATATCTACCACCAACTAGAGCCCCTCTACCTGAACCTC  99
      ||| ||| ||||||||||| |||| ||||||| ||||||| ||| |||| 
seq2  GAGTTCTTGAACATATCTA-CACC-ACTAGAG-CCCTCTA-CTG-ACCT-  88

seq1  CATGCCTACGTCCGCCGCGCACTGCACCGCCGCTATGGGGACAAATACGT  149
      ||||||||||| |||||||||||||||||||||||| ||||| |||||||
seq2  CATGCCTACGT-CGCCGCGCACTGCACCGCCGCTAT-GGGAC-AATACGT  135

seq1  CAATCTCAGGGGGCCTATTCCTGCCCATTTGCTGGGTAAGAACCTGAACC  199
      ||||||||||||  ||| ||||||||||||||||||| ||||||||||||
seq2  CAATCTCAGGGG--CTA-TCCTGCCCATTTGCTGGGT-AGAACCTGAACC  181

seq1  TTGCTGCCCAGAGGAGCTCGGGTGCAGGAGGATGCCTAGAAGAGGGACGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCCAGAGGAGCTCGGGTGCAGGAGGATGCCTAGAAGAGGGACGA  231

seq1  TGGGTCACCCTCACAGTGCCTCAGGCATGTGGAATGTCATAACCTTTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACCCTCACAGTGCCTCAGGCATGTGGAATGTCATAACCTTTGCT  281

seq1  TCCTTACACGGAAGCCCCCCATGGCTCAATGTCCCCACCAAGCTGGAATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACACGGAAGCCCCCCATGGCTCAATGTCCCCACCAAGCTGGAATC  331

seq1  CTGCTTTAGAGACTGAGGTTTATTTAGAGCCAAGAATTTAGAGCCAATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTAGAGACTGAGGTTTATTTAGAGCCAAGAATTTAGAGCCAATGG  381

seq1  AAAACTGGAATAGAGCAGAGCTAGGGGTCAAGTCGATGGCTTTGGCTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAATAGAGCAGAGCTAGGGGTCAAGTCGATGGCTTTGGCTTCA  431

seq1  GGGTCAGGGTTAGCAGCAGCCTTATTGTGGACCATACCTGAGGACATGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGGTTAGCAGCAGCCTTATTGTGGACCATACCTGAGGACATGAG  481

seq1  TCTGGGAGCCTGGAAGCCTGGAAGCCTGTGGCCCCTTAGTGAAGGATCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGCCTGGAAGCCTGGAAGCCTGTGGCCCCTTAGTGAAGGATCCT  531

seq1  GGCATAATCGGAAAAGACACCAGTAACCAGTCCTGTGGAGCCCACAGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAATCGGAAAAGACACCAGTAACCAGTCCTGTGGAGCCCACAGAGT  581

seq1  CAGGGGACATGTCCTTTGGCCCAAGGGTATATAGGTGCCGACACCCACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACATGTCCTTTGGCCCAAGGGTATATAGGTGCCGACACCCACAC  631

seq1  AGGATAGCATACATAATGGGAATGGTTGAGCAGGAGACCAAACTGTCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCATACATAATGGGAATGGTTGAGCAGGAGACCAAACTGTCCCA  681

seq1  CTTGCTTCTTCCCTGTAGGAGACATGTGGGCCCAGAGCTGGGAGAACATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTTCCCTGTAGGAGACATGTGGGCCCAGAGCTGGGAGAACATC  731

seq1  TACGACATGGTAGTGCCTTTCCCAGACAAACCCAACCTCGATGTCACCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACATGGTAGTGCCTTTCCCAGACAAACCCAACCTCGATGTCACCAG  781

seq1  TACAATGGTACAGAAGGTAGGTCAATGAGACAGGAGTTGGGGGTCATGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGTACAGAAGGTAGGTCAATGAGACAGGAGTTGGGGGTCATGTG  831

seq1  ATAGGCATGGGGCCCCTCCCCTTTTCTGCAATAGTCAACAGTGACCTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATGGGGCCCCTCCCCTTTTCTGCAATAGTCAACAGTGACCTAAG  881

seq1  GTGGCAGAGTGATCTGCTGTGGTCAGTAGTGCCCTGCCTTTGGGAAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAGTGATCTGCTGTGGTCAGTAGTGCCCTGCCTTTGGGAAGTGA  931

seq1  GGCCACTGAGCCTCAGATACCTTTCCTGTCCTGGGTGGAAGTCACAAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGAGCCTCAGATACCTTTCCTGTCCTGGGTGGAAGTCACAAGCC  981

seq1  CTGAGCTCAAGGCATGGCTCCATACGGCTGCCTCCTGACCTGTTTCCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCAAGGCATGGCTCCATACGGCTGCCTCCTGACCTGTTTCCCTG  1031

seq1  CCTGCTGGCCAGGGCTGGAACGCCACACACATGTTCCGGGTATCAGAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGCCAGGGCTGGAACGCCACACACATGTTCCGGGTATCAGAGGA  1081

seq1  ATTC  1103
      ||||
seq2  ATTC  1085