This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
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Search Result
BAC
Clone Name
B6Ng01-137A04
Chromosome
11 (Build37)
Map Location
36,256,876 - 36,431,697
singlet/doublet
doublet
Overlap gene
Odz2
Upstream gene
Slit3
,
Pank3
,
LOC666733
,
AI595406
,
Rars
,
Wwc1
,
LOC636532
Downstream gene
none
Link
Open Mouse BAC browser
Click to get alignment info.
name
Slit3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20564
MGI:1315202
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Pank3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:211347
MGI:2387464
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666733
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666733
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins
pseudo
: _no_value
name
AI595406
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:237730
MGI:3034689
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rars
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:104458
MGI:1914297
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Wwc1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:211652
MGI:2388637
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC636532
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:636532
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 Proteins
pseudo
: _no_value
name
Odz2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:23964
MGI:1345184
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Slit3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142378369
GeneID:20564
MGI:1315202
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: slit homolog 3 (Drosophila)
transcript_id
: NM_011412.2
name
Pank3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:139948619
GeneID:211347
MGI:2387464
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: pantothenate kinase 3
transcript_id
: NM_145962.2
name
AI595406
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802179
GeneID:237730
MGI:3034689
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: expressed sequence AI595406
transcript_id
: NM_001004147.2
name
Rars
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142348387
GeneID:104458
MGI:1914297
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: arginyl-tRNA synthetase
transcript_id
: NM_025936.2
name
Wwc1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:82524277
GeneID:211652
MGI:2388637
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: WW, C2 and coiled-coil domain containing 1
transcript_id
: NM_170779.1
name
Odz2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:7657414
GeneID:23964
MGI:1345184
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: odd Oz/ten-m homolog 2 (Drosophila)
transcript_id
: NM_011856.2
name
Slit3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83523732
CCDS:CCDS24542.1
GeneID:20564
MGI:1315202
definition
GO_component
: GO:0005615 - extracellular space [Evidence IDA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005102 - receptor binding [Evidence TAS]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0007411 - axon guidance [Evidence IDA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IGI] [Evidence IMP]
codon_start
: 1
exception
: mismatches in translation
product
: slit homolog 3
protein_id
: NP_035542.1
name
Pank3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:22122397
CCDS:CCDS24543.1
GeneID:211347
MGI:2387464
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004594 - pantothenate kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]; GO:0015937 - coenzyme A biosynthesis [Evidence IEA]
codon_start
: 1
product
: pantothenate kinase 3
protein_id
: NP_666074.1
name
AI595406
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51921297
GeneID:237730
MGI:3034689
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003723 - RNA binding [Evidence IEA]
GO_process
: GO:0006364 - rRNA processing [Evidence IEA]
codon_start
: 1
product
: hypothetical protein LOC237730
protein_id
: NP_001004147.1
name
Rars
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19882225
CCDS:CCDS24544.1
GeneID:104458
MGI:1914297
definition
GO_function
: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: arginyl-tRNA synthetase
protein_id
: NP_080212.1
name
Wwc1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82524278
CCDS:CCDS24545.1
GeneID:211652
MGI:2388637
definition
codon_start
: 1
product
: WW, C2 and coiled-coil domain containing 1
protein_id
: NP_740749.1
name
Odz2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7657415
CCDS:CCDS24546.1
GeneID:23964
MGI:1345184
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence ISS]
codon_start
: 1
exception
: mismatches in translation
note
: isoform 1 is encoded by transcript variant 1; teneurin 2
product
: odd Oz/ten-m homolog 2 isoform 1
protein_id
: NP_035986.2
name
LOC636532
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:636532
definition
number
: 1
pseudo
: _no_value
name
LOC636532
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:636532
definition
number
: 2
pseudo
: _no_value
name
LOC636532
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:636532
definition
number
: 3
pseudo
: _no_value
name
LOC636532
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:636532
definition
number
: 4
pseudo
: _no_value
name
LOC636532
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:636532
definition
number
: 5
pseudo
: _no_value
name
LOC636532
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:636532
definition
number
: 6
pseudo
: _no_value
name
LOC666733
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149261850
GeneID:666733
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins
product
: similar to ribosomal protein L7a
pseudo
: _no_value
transcript_id
: XR_030553.1
clone name
MSMg01-164O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147E12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406J22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-319O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358M03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-069P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537P20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-208E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-277D15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-208D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336F15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341M08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419B04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-171F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-158C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-334H22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-196F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-425D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320I15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513L12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-158L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-112H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-155O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-450E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-399O08
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-334K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051K21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-117F06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-386K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515K24
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-540E12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454F24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-313C12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237J12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135M01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-075P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163E21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-041J17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-197L10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-172E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-182P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309O07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-285C02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-299A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-235C07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-007A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-254P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-324J03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259M22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-283I08
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