BAC Information

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BAC

Clone NameB6Ng01-137E21
Chromosome11 (Build37)
Map Location 26,690,674 - 26,783,622
singlet/doubletdoublet
Overlap geneLOC666270
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
Downstream geneLOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137E21.bB6Ng01-137E21.g
ACCDH936855DH936856
length1,1611,153
definitionDH936855|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E21, 5' end.DH936856|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,690,674 - 26,691,834)(26,782,459 - 26,783,622)
sequence
gaattcaataattctgggaaacaaaagggacaaatcttactgtttgaaat
atatatataaaatgagaacatgcataatatatacacatatgtataacaga
atagtttatctttggtattttcaaaacttcctctttctcatcagtgtctt
ctatccagaatttgtattatgtgtgcttcctaatatgaccagttctgttt
gtatctcatccatgttgagatgtcatatgctacccattgttttaataaca
tctccctatgagtgcagcctcctcaaaatttcaaccaattttatgtcagc
aaattagtaaaatcaccttgttggtggaacttcaccaagttggtgtcttg
tcttctgcttctgttctgggcttggctgccaccattgtcaatgacctaat
aaaagcccacctgctttcacaaaagcttccacagcacaataatgcaggtg
ctgctggtgtcactgaaaaaactttccccaatatgtaaaataaagtcaca
aaatgtgcaaaagccaagcctatcctttaaaaaagaaggattcattagca
gcaccagttttaaatttagaactttttctgactttcaatgataacttttt
aggagtgtatgatgattcaacagaaaggcgaggtttgggggtaataggaa
agtctactagactagcttaaatattattttctcatatacatgtcactcaa
gcacacacacacatgcatgcacacacacacaaagaggcagagaaggaaag
agagagagagagagagagagagagagagagagaaacagacacatgtataa
ccaaaagctttcccatactcagtcttcattgtaaatcagccaacatcctg
ggttgaatgattttcagtggcacaatttgattaaaacttggttttaaaag
gaggaataaaaatttaaatgggattaattatcactgtgatatgatgtggg
tacataaatgcagggttttgtatagatgcagaggacaattattggaatat
ttgggatacagtattatttttcacattcctcctgtatgctggaacttcag
ttcttcacaattatcactgagaatttatccaaagagccatcttacctggc
tctcagggagggtaataagatggattccttatgatagattgtcaaacaat
tcctacctacc
gaattcagtgaggccctcaggatttgtgcaagcatgttgatttcaaaaat
gttatctttagtaaaagtagtaggttttcatgctatctgactggatagta
ttagaccttctgatgcacataattttgaacttagtattttatttaattat
tcaacacatttataaagcatctaaaatttacagttagaattttcttgttg
gtagtaaatactctttgaagcattttaatgattatattttacatcaaaat
atgtatgtttcgtaatttatttatttttttaacagctaagcatttgcttg
gtttaaaattccccactactataaatagtaccaaaaatgaatatctttat
attttaatttttgacaattcttaaaaataaccacctctgtagtttttttc
acacaagctgtaaatagcaaggttcatagcattgcagtgcactttctaga
tgttgtaatgtaaatgttctagataaaagagaggaaaaaaaggaagcatg
atttttcagtgtatcaaaacaaaactaacttcaactttctgctctgggct
gtaagtttagagtcatttagtgcttgggtttcgtcgtggggcagttatag
tagagacaccatttctataggagcagcgtgggtgacgggaagggcgtttt
aactgcagccttgtccttcccatctatttgacttgactcattcctctgcc
caatccttctttccactaacatgaaaaggatagccacaaatcctaagtgt
ggttgctttgaacggtatatgctatgaatatagatatagagggaaacatg
cataatattgatgcagcttttattcaattaatgatgccccttcccattca
gtcatgatgtgctttcaattgtccactagaacgtgtcaaacaagtcttct
acacctgaagttaaagaagatgatttacttcagtctgcgcctgtctgtgc
cttcctagccaaagtaggagaccaaataacaagcgaatcatggagtcatt
tataagtacttacagccacacttggggcttattttacactctagaattgg
agttatgagattcaaccttgtcaccctgtgtttttactagtactagaaat
gatcactattttttctaaagaaccctttataatcgtttcataggttggaa
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26690674_26691834
seq2: B6Ng01-137E21.b_42_1202

seq1  GAATTCAATAATTCTGGGAAACAAAAGGGACAAATCTTACTGTTTGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATTCTGGGAAACAAAAGGGACAAATCTTACTGTTTGAAAT  50

seq1  ATATATATAAAATGAGAACATGCATAATATATACACATATGTATAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAAATGAGAACATGCATAATATATACACATATGTATAACAGA  100

seq1  ATAGTTTATCTTTGGTATTTTCAAAACTTCCTCTTTCTCATCAGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTATCTTTGGTATTTTCAAAACTTCCTCTTTCTCATCAGTGTCTT  150

seq1  CTATCCAGAATTTGTATTATGTGTGCTTCCTAATATGACCAGTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAGAATTTGTATTATGTGTGCTTCCTAATATGACCAGTTCTGTTT  200

seq1  GTATCTCATCCATGTTGAGATGTCATATGCTACCCATTGTTTTAATAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCATCCATGTTGAGATGTCATATGCTACCCATTGTTTTAATAACA  250

seq1  TCTCCCTATGAGTGCAGCCTCCTCAAAATTTCAACCAATTTTATGTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATGAGTGCAGCCTCCTCAAAATTTCAACCAATTTTATGTCAGC  300

seq1  AAATTAGTAAAATCACCTTGTTGGTGGAACTTCACCAAGTTGGTGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTAAAATCACCTTGTTGGTGGAACTTCACCAAGTTGGTGTCTTG  350

seq1  TCTTCTGCTTCTGTTCTGGGCTTGGCTGCCACCATTGTCAATGACCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTTCTGTTCTGGGCTTGGCTGCCACCATTGTCAATGACCTAAT  400

seq1  AAAAGCCCACCTGCTTTCACAAAAGCTTCCACAGCACAATAATGCAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCACCTGCTTTCACAAAAGCTTCCACAGCACAATAATGCAGGTG  450

seq1  CTGCTGGTGTCACTGAAAAAACTTTCCCCAATATGTAAAATAAAGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTGTCACTGAAAAAACTTTCCCCAATATGTAAAATAAAGTCACA  500

seq1  AAATGTGCAAAAGCCAAGCCTATCCTTTAAAAAAGAAGGATTCATTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCAAAAGCCAAGCCTATCCTTTAAAAAAGAAGGATTCATTAGCA  550

seq1  GCACCAGTTTTAAATTTAGAACTTTTTCTGACTTTCAATGATAACTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGTTTTAAATTTAGAACTTTTTCTGACTTTCAATGATAACTTTTT  600

seq1  AGGAGTGTATGATGATTCAACAGAAAGGCGAGGTTTGGGGGTAATAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTATGATGATTCAACAGAAAGGCGAGGTTTGGGGGTAATAGGAA  650

seq1  AGTCTACTAGACTAGCTTAAATATTATTTTCTCATATACATGTCACTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTAGACTAGCTTAAATATTATTTTCTCATATACATGTCACTCAA  700

seq1  GCACACACACACATGCATGCACACACACACAAAGAGGCAGAGAAGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACATGCATGCACACACACACAAAGAGGCAGAGAAGGAAAG  750

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGACACATGTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGACACATGTATAA  800

seq1  CCAAAAGCTTTCCCATACTCAGTCTTCATTGTAAATCAGCCAACATCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCTTTCCCATACTCAGTCTTCATTGTAAATCAGCCAACATCCTG  850

seq1  GGTTGAATGATTTTCAGTGGCACAATTTGATTAAAACTTGGTTTTAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATGATTTTCAGTGGCACAATTTGATTAAAACTTGGTTTTAAAAG  900

seq1  GAGGAATAAAAATTT-AATGGGATTAATTATCACTGTGATATGATGTGGG  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGAATAAAAATTTAAATGGGATTAATTATCACTGTGATATGATGTGGG  950

seq1  TACATAAATGCAGGGTTTTGTATAGATGCCAGAGGACAATTATTGGAATA  999
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACATAAATGCAGGGTTTTGTATAGATG-CAGAGGACAATTATTGGAATA  999

seq1  TTTTGGAATACAAGTATTATTTTTCACATTCCTCCTGTATGCTGGAAC-T  1048
       ||||| |||| |||||||||||||||||||||||||||||||||||| |
seq2  -TTTGGGATAC-AGTATTATTTTTCACATTCCTCCTGTATGCTGGAACTT  1047

seq1  CAGGTTCTCACAATTATCCACTGAGACATTATCCAAAGAGCCATCTTA-C  1097
      ||| |  |||||||||| ||||||||  |||||||||||||||||||| |
seq2  CAGTTCTTCACAATTAT-CACTGAGAATTTATCCAAAGAGCCATCTTACC  1096

seq1  TGGCTCTCAGG--AGGTAGTAAAGATAGTATCCTAATGATAGAATGTCCA  1145
      |||||||||||   |||| | ||||| |  |||| |||||||| |||| |
seq2  TGGCTCTCAGGGAGGGTAAT-AAGATGGATTCCTTATGATAGATTGTCAA  1145

seq1  AACATTCCTACCTACC  1161
      |  |||||||||||||
seq2  ACAATTCCTACCTACC  1161

seq1: chr11_26782459_26783622
seq2: B6Ng01-137E21.g_67_1219 (reverse)

seq1  CCTTTCCAAACCTATGAAACGATTAGTAAAGGTTCTTTTAAGAAAAAATA  50
      ||||||| |||||||||||||||||  || ||||||||  ||||||||||
seq2  CCTTTCC-AACCTATGAAACGATTATAAAGGGTTCTTT--AGAAAAAATA  47

seq1  GTTGATCATTTCTAAGTAACTTAGTAAAAACACA-GGTGACAAAGGGTTT  99
      | ||||||||||| ||||   ||||||||||||| ||||||||   | ||
seq2  G-TGATCATTTCT-AGTA--CTAGTAAAAACACAGGGTGACAA---GGTT  90

seq1  GAATTTCATAACTCAAATTCTAGAGTGTAAAATAAGGCCCAAGTGTGGCT  149
      |||| ||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GAATCTCATAACTCCAATTCTAGAGTGTAAAATAAGCCCCAAGTGTGGCT  140

seq1  GTTAAGTACTTATAGATTGACTCCATGATTCGCTTGTTATTTGGTCTCCT  199
      | |||||||||||| | |||||||||||||||||||||||||||||||||
seq2  G-TAAGTACTTATA-AATGACTCCATGATTCGCTTGTTATTTGGTCTCCT  188

seq1  ACTTTGGCTAGGAAGGCACAGACAGGCGCAGACTGAAGTAAATCATCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCTAGGAAGGCACAGACAGGCGCAGACTGAAGTAAATCATCTTC  238

seq1  TTTAACTTCAGGTGTAGAAGACTTGTTTGACACGTTCTAGTGGACAATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCAGGTGTAGAAGACTTGTTTGACACGTTCTAGTGGACAATTG  288

seq1  AAAGCACATCATGACTGAATGGGAAGGGGCATCATTAATTGAATAAAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACATCATGACTGAATGGGAAGGGGCATCATTAATTGAATAAAAGC  338

seq1  TGCATCAATATTATGCATGTTTCCCTCTATATCTATATTCATAGCATATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATATTATGCATGTTTCCCTCTATATCTATATTCATAGCATATA  388

seq1  CCGTTCAAAGCAACCACACTTAGGATTTGTGGCTATCCTTTTCATGTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCAAAGCAACCACACTTAGGATTTGTGGCTATCCTTTTCATGTTAG  438

seq1  TGGAAAGAAGGATTGGGCAGAGGAATGAGTCAAGTCAAATAGATGGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAAGGATTGGGCAGAGGAATGAGTCAAGTCAAATAGATGGGAAG  488

seq1  GACAAGGCTGCAGTTAAAACGCCCTTCCCGTCACCCACGCTGCTCCTATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCTGCAGTTAAAACGCCCTTCCCGTCACCCACGCTGCTCCTATA  538

seq1  GAAATGGTGTCTCTACTATAACTGCCCCACGACGAAACCCAAGCACTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTGTCTCTACTATAACTGCCCCACGACGAAACCCAAGCACTAAA  588

seq1  TGACTCTAAACTTACAGCCCAGAGCAGAAAGTTGAAGTTAGTTTTGTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAAACTTACAGCCCAGAGCAGAAAGTTGAAGTTAGTTTTGTTTT  638

seq1  GATACACTGAAAAATCATGCTTCCTTTTTTTCCTCTCTTTTATCTAGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTGAAAAATCATGCTTCCTTTTTTTCCTCTCTTTTATCTAGAAC  688

seq1  ATTTACATTACAACATCTAGAAAGTGCACTGCAATGCTATGAACCTTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTACAACATCTAGAAAGTGCACTGCAATGCTATGAACCTTGCT  738

seq1  ATTTACAGCTTGTGTGAAAAAAACTACAGAGGTGGTTATTTTTAAGAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGCTTGTGTGAAAAAAACTACAGAGGTGGTTATTTTTAAGAATT  788

seq1  GTCAAAAATTAAAATATAAAGATATTCATTTTTGGTACTATTTATAGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAATTAAAATATAAAGATATTCATTTTTGGTACTATTTATAGTAG  838

seq1  TGGGGAATTTTAAACCAAGCAAATGCTTAGCTGTTAAAAAAATAAATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATTTTAAACCAAGCAAATGCTTAGCTGTTAAAAAAATAAATAAA  888

seq1  TTACGAAACATACATATTTTGATGTAAAATATAATCATTAAAATGCTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAAACATACATATTTTGATGTAAAATATAATCATTAAAATGCTTCA  938

seq1  AAGAGTATTTACTACCAACAAGAAAATTCTAACTGTAAATTTTAGATGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTTACTACCAACAAGAAAATTCTAACTGTAAATTTTAGATGCT  988

seq1  TTATAAATGTGTTGAATAATTAAATAAAATACTAAGTTCAAAATTATGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGTGTTGAATAATTAAATAAAATACTAAGTTCAAAATTATGTG  1038

seq1  CATCAGAAGGTCTAATACTATCCAGTCAGATAGCATGAAAACCTACTACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAGGTCTAATACTATCCAGTCAGATAGCATGAAAACCTACTACT  1088

seq1  TTTACTAAAGATAACATTTTTGAAATCAACATGCTTGCACAAATCCTGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAAGATAACATTTTTGAAATCAACATGCTTGCACAAATCCTGAG  1138

seq1  GGCCTCACTGAATTC  1164
      |||||||||||||||
seq2  GGCCTCACTGAATTC  1153