BAC Information

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BAC

Clone NameB6Ng01-138A02
Chromosome11 (Build37)
Map Location 96,728,940 - 96,899,924
singlet/doubletdoublet
Overlap geneLOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46
Upstream geneB4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2
Downstream geneMrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138A02.bB6Ng01-138A02.g
ACCDH937376DH937377
length445336
definitionDH937376|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A02, 5' end.DH937377|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,899,480 - 96,899,924)(96,728,940 - 96,729,275)
sequence
gaattctcctgaattgaaacactaatttctggctgggtgttggtggcaca
cacatttaatttcaacactttggaggcagaggcaaggcagatctctgtga
gttccaggacagtcaggacaacacagagacaccctgtcttgaaaacacaa
agcaaaacaaacaaaccagcataaagactgatttcctaccccaccttacc
aagagctccgagctttagaatcactatgttcggacacttctcttggtcta
gattccaggccttctagactgtcgaagatcctctcaggctcaagcctgtt
cccattgggggggggggtggcatatgcctgtcaccccagtccttgagcac
tgaagactgacaagatcgaggctacctaagttacatatgaagtcccagtc
tgccacacagaactgttaaaataaatataagatccaagtgtgggg
ccacgctcgataaagtttatactgcaaggcagaaaaggtgctttagtgac
gccgggagaacaagcctggggccctcaggagatgaacgtgaagcctgaac
tctgacccatccgatgctacacagctaacaaggaacagagcctgcgcagg
aatgatggtgtgcccggtcaccacctctctctcacttgatttttgagaca
gaatctctctatgtagcccaagctggtcttgaactcacaatccccctgtc
ctcacttccccagtgctgatgattacagcaatatactagcagttttttct
tttctttcttttttaaaagatttatgccgggcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96899480_96899924
seq2: B6Ng01-138A02.b_31_476 (reverse)

seq1  CCCCACACTTGGATC-TATATTTATTTTAAGAGTTCTGTGTGGCAGACTG  49
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CCCCACACTTGGATCTTATATTTATTTTAACAGTTCTGTGTGGCAGACTG  50

seq1  GGACTTCCTATGTAACTTAGGTAGCCTCGATCTTGTCAGTCTTCAGTGCT  99
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCATATGTAACTTAGGTAGCCTCGATCTTGTCAGTCTTCAGTGCT  100

seq1  CAAGGACTGGGGTGACAGGCATATGCCACCCCCCCCCCCAATGGGAACAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTGGGGTGACAGGCATATGCCACCCCCCCCCCCAATGGGAACAG  150

seq1  GCTTGAGCCTGAGAGGATCTTCGACAGTCTAGAAGGCCTGGAATCTAGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCCTGAGAGGATCTTCGACAGTCTAGAAGGCCTGGAATCTAGAC  200

seq1  CAAGAGAAGTGTCCGAACATAGTGATTCTAAAGCTCGGAGCTCTTGGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGTGTCCGAACATAGTGATTCTAAAGCTCGGAGCTCTTGGTAA  250

seq1  GGTGGGGTAGGAAATCAGTCTTTATGCTGGTTTGTTTGTTTTGCTTTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTAGGAAATCAGTCTTTATGCTGGTTTGTTTGTTTTGCTTTGTG  300

seq1  TTTTCAAGACAGGGTGTCTCTGTGTTGTCCTGACTGTCCTGGAACTCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGGGTGTCTCTGTGTTGTCCTGACTGTCCTGGAACTCACA  350

seq1  GAGATCTGCCTTGCCTCTGCCTCCAAAGTGTTGAAATTAAATGTGTGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCTTGCCTCTGCCTCCAAAGTGTTGAAATTAAATGTGTGTGC  400

seq1  CACCAACACCCAGCCAGAAATTAGTGTTTCAATTCAGGAGAATTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACACCCAGCCAGAAATTAGTGTTTCAATTCAGGAGAATTCC  446

seq1: chr11_96728940_96729275
seq2: B6Ng01-138A02.g_72_407

seq1  CCACGCTCGATAAAGTTTATACTGCAAGGCAGAAAAGGTGCTTTAGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTCGATAAAGTTTATACTGCAAGGCAGAAAAGGTGCTTTAGTGAC  50

seq1  GCCGGGAGAACAAGCCTGGGGCCCTCAGGAGATGAACGTGAAGCCTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGAGAACAAGCCTGGGGCCCTCAGGAGATGAACGTGAAGCCTGAAC  100

seq1  TCTGACCCATCCGATGCTACACAGCTAACAAGGAACAGAGCCTGCGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCATCCGATGCTACACAGCTAACAAGGAACAGAGCCTGCGCAGG  150

seq1  AATGATGGTGTGCCCGGTCACCACCTCTCTCTCACTTGATTTTTGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGTGTGCCCGGTCACCACCTCTCTCTCACTTGATTTTTGAGACA  200

seq1  GAATCTCTCTATGTAGCCCAAGCTGGTCTTGAACTCACAATCCCCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCTATGTAGCCCAAGCTGGTCTTGAACTCACAATCCCCCTGTC  250

seq1  CTCACTTCCCCAGTGCTGATGATTACAGCAATATACTAGCAGTTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCCCAGTGCTGATGATTACAGCAATATACTAGCAGTTTTTTCT  300

seq1  TTTCTTTCTTTTTTAAAAGATTTATGCCGGGCAGTG  336
      ||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTTAAAAGATTTATGCCGGGCAGTG  336