BAC Information

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BAC

Clone NameB6Ng01-138G12
Chromosome5 (Build37)11 (Build37)
Map Location 116,479,486 - 116,479,9874,444,189 - 4,445,277
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1
Downstream geneLOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138G12.bB6Ng01-138G12.g
ACCDH937676DH937677
length5201,081
definitionDH937676|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G12, 5' end.DH937677|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,479,486 - 116,479,987)(4,444,189 - 4,445,277)
sequence
tataataaaatcttgtctcaaaaataataatacagggctggagagatggc
tcagcagttaagaacactgactgctcttccaaaggtgtcgagttcaaatc
ccagcaaccacatggtggcttacaaccatctataatgagatctgacatcc
tcttcggatagtagtgtctgaagacagctacagtgtacttacatataata
aataaataaataaataaataaatctttaaataataataataataatatgg
agcttagtggtggcacacgcctttaatcctagcacttgggaagcagaggc
aggcggatctctgtaacttgaggccagtttagtctataaagtgagttcca
ggtcagcaaggactacacagagaaaccctgttttgaaacaaaaacatcat
catcataataataataataacaacaacaacaacaggaggctggagaaatg
gctcagctgttaagagcaccgactgctcttccaaaggtcctgagttcaaa
tcccagcaaccacatggtgg
gaattccaggacagccgtggctaaacagagaaaccctgtcttaaaaaaaa
aaaaacaataaaaaaaaaacaaacccaaataaacaaacaacaacaaacaa
aaaatctaccacaaccacatacaatttttaaaaagttaaaatttaaaatt
ccaaaatgtaaagataattcatttttctaacttgctctttataattactt
ctgtgatatattctttttcttttcctatttgactcagatgtattaagcca
ttaacagaattataaggaagttgcacaagtaatctataatgttattttct
gacttcctctataaagagggaaggtatcacttcctactgaaattaagaat
taaaaaaccagggctggtaagatggctcagcagttaagagtactgactgc
tctcacgaggcagaggcaggcagatttctgagttcgaggccagcaggaca
gccagggctatacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaacccccaaaagtattgactgttc
ttccaaaggtcctgagttcaattcccagcaaccacatggtggttttaaaa
taagcaagcaagggagtgaaagtgtgagaaagagagaacaggaaatagtt
tcttctgacgtgtattttatagaaaatcatggttaatagcttgctcacat
tactaatttggctcattgggaataattggtgtgtatgggcatctgtataa
ctcctggctgtacttgttactgaaaattaggacatccctggacctggaga
gatggctccgtggttaagagccaccatctgctcttcctgagttcatttcc
cagcaaccacatggtggctccagacccatcataaatgagaatctgatgcc
ttcttctggggtgtctggtaaacagctacagtgtacttccatataataaa
taattaatctttaaaaaaaaataacaccattttgcgaacacgaagaaagt
ttcgtgtttagtaaagacctaattggattcccagctccattcaagctaat
atgataccaaactttgctggagaatagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116479486_116479987
seq2: B6Ng01-138G12.b_141_571 (reverse)

seq1  CCACCATGTGGTTGCTAATCTCTCTGTCCATGGTGTTGATAACTTCTAAT  50
      ||||||||||||||||               ||  |||  ||||      
seq2  CCACCATGTGGTTGCT--------------GGGATTTG--AACT------  28

seq1  GCATGCCCTAGTCCCTAGTAATCCATCGAAGT-GTTCCTCTTGA-ACCT-  97
       || | |||      | | |    |  | ||| | | ||||| | | || 
seq2  -CAGGACCT------TTGGA----AGAGCAGTCGGTGCTCTTAACAGCTG  67

seq1  --CCCCTCCCCCATAAAAGCCTTCCTGTGCTCACTGTCCAGATCCCATTC  145
        ||  | | ||     |||| ||||||  |   |||     |   ||| 
seq2  AGCCATTTCTCC-----AGCC-TCCTGTTGTTGTTGT-----TGTTATT-  105

seq1  AAGCCATATCCAACCTGTCGAGACTCCCTTAGCTCCAGGCCAGCTATCCA  195
           ||    |   ||  ||   |   || | | ||   |||   | | 
seq2  -----ATTATTATTATGATGATGATGTTTTTGTTTCAAAACAGGGTTTC-  149

seq1  GTCACCAATGCAGTCCCGACACAACACTGTGAACAGTCATCAACCTAGAA  245
           |  || |||||   |  |   ||| ||||   | | |   |||| 
seq2  ----TCTGTGTAGTCCTTGCTGA--CCTG-GAACTCACTTTA---TAGAC  189

seq1  CACACTAGTTGTTGGCATTTTTCTGAGCATCATCAGTCTTGAGGTTGGAA  295
       | ||    ||    ||  || | ||| |||  |   | |  | ||   |
seq2  TAAAC----TGGCCTCAAGTTACAGAG-ATCCGCCTGCCTCTGCTTCCCA  234

seq1  CGTTCCAGAAGGATACAAAACAAACACTGTTGAATATGGAGACTGAAGAA  345
       || |    |||||  ||  |      |||   |       ||| |||  
seq2  AGTGC---TAGGATTAAAGGC-----GTGTGCCA-----CCACT-AAGCT  270

seq1  CAAGGGAGTCAATTATTATCATTGTTT-----TTTTTTTTTTTAAAGATT  390
      | |   | |  |||||||| ||| |||     ||| ||| ||||   |||
seq2  CCA--TATT--ATTATTATTATTATTTAAAGATTTATTTATTTATTTATT  316

seq1  TATTTATTTTATGTAAGTACACTGTAGCTGTCTTCAGACACCCC---CAG  437
      |||||||| ||||||||||||||||||||||||||||||||  |   | |
seq2  TATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTACTATCCG  366

seq1  AAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCTACCATGTGGTTG  487
      ||||||   ||||||||||||| |||||||||| ||| ||||||||||||
seq2  AAGAGGATGTCAGATCTCATTATAGATGGTTGTAAGCCACCATGTGGTTG  416

seq1  CTGGGATTTGAACTC  502
      |||||||||||||||
seq2  CTGGGATTTGAACTC  431

seq1: chr11_4444189_4445277
seq2: B6Ng01-138G12.g_67_1147

seq1  GAATTCCAGGACAGCCGTGGCTAAACAGAGAAACCCTGTCTTAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCGTGGCTAAACAGAGAAACCCTGTCTTAAAAAAAA  50

seq1  AAAAACAATAAAAAAAAAACAAACCCAAATAAACAAACAACAACAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATAAAAAAAAAACAAACCCAAATAAACAAACAACAACAAACAA  100

seq1  AAAATCTACCACAACCACATACAATTTTTAAAAAGTTAAAATTTAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACCACAACCACATACAATTTTTAAAAAGTTAAAATTTAAAATT  150

seq1  CCAAAATGTAAAGATAATTCATTTTTCTAACTTGCTCTTTATAATTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTAAAGATAATTCATTTTTCTAACTTGCTCTTTATAATTACTT  200

seq1  CTGTGATATATTCTTTTTCTTTTCCTATTTGACTCAGATGTATTAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATATATTCTTTTTCTTTTCCTATTTGACTCAGATGTATTAAGCCA  250

seq1  TTAACAGAATTATAAGGAAGTTGCACAAGTAATCTATAATGTTATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAATTATAAGGAAGTTGCACAAGTAATCTATAATGTTATTTTCT  300

seq1  GACTTCCTCTATAAAGAGGGAAGGTATCACTTCCTACTGAAATTAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTCTATAAAGAGGGAAGGTATCACTTCCTACTGAAATTAAGAAT  350

seq1  TAAAAAACCAGGGCTGGTAAGATGGCTCAGCAGTTAAGAGTACTGACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACCAGGGCTGGTAAGATGGCTCAGCAGTTAAGAGTACTGACTGC  400

seq1  TCTCACGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCAGGACA  450

seq1  GCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAA  500

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAGTACTGACTGTTC  550
      ||||||||||||||||||||||||||||  |||||||||| |||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCAAAAGTATTGACTGTTC  550

seq1  TTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTTTAAAA  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTTTAAAA  600

seq1  TAAGCAAGCAAGGGAGTGAAAGTGTGAGGAAGAGAGAACAGGAAATAGTT  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGCAAGCAAGGGAGTGAAAGTGTGAGAAAGAGAGAACAGGAAATAGTT  650

seq1  TCTTCTGACGTGTATTTTATAG-AAATCATGGTTAATAGCTTGCTCACAT  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTCTGACGTGTATTTTATAGAAAATCATGGTTAATAGCTTGCTCACAT  700

seq1  TACTAATTTGGCTCATTGGG-ATTATTGGTGTGTAT-GGCATCTGTATAA  747
      |||||||||||||||||||| || |||||||||||| |||||||||||||
seq2  TACTAATTTGGCTCATTGGGAATAATTGGTGTGTATGGGCATCTGTATAA  750

seq1  CTCCTGGCTGTACTTGTTACTGAAAATTAGGACATCCCTGGACCTGGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTGTACTTGTTACTGAAAATTAGGACATCCCTGGACCTGGAGA  800

seq1  GATGGCTCAGTGGTTAAGAG-CACCATCTGCTCTTCCTGAGTTCAATTCC  846
      |||||||| ||||||||||| |||||||||||||||||||||||| ||||
seq2  GATGGCTCCGTGGTTAAGAGCCACCATCTGCTCTTCCTGAGTTCATTTCC  850

seq1  CAGCAACCACATGGTGGCT-CAGAACCATCAATAATGAG-ATCTGATGCC  894
      ||||||||||||||||||| |||| ||||||  |||||| ||||||||||
seq2  CAGCAACCACATGGTGGCTCCAGACCCATCATAAATGAGAATCTGATGCC  900

seq1  CTCTTCTGGTGTGTCTGG-AGACAGCTACAGTGTACTTACATATAATAAA  943
       |||||||| |||||||| | ||||||||||||||||| |||||||||||
seq2  TTCTTCTGGGGTGTCTGGTAAACAGCTACAGTGTACTTCCATATAATAAA  950

seq1  TAAATAAATCTTTAAAAAAAAAATAAAAACCAATTTTGGAGACAGGAAGA  993
      | ||| ||||||| |||||||||||| |  | ||||||   ||| |||||
seq2  T-AATTAATCTTT-AAAAAAAAATAACA--CCATTTTGCGAACACGAAGA  996

seq1  TAGTTCAGTGGTTTAAGTAAAGACCTCAATTTGGATCCCCAGCTCCCATT  1043
       ||||  |||  || |||||||||||  | |||||| ||||||| |||||
seq2  AAGTTTCGTG--TTTAGTAAAGACCT--AATTGGATTCCCAGCT-CCATT  1041

seq1  CAAAAGCTAATATGATATCACAAACTTGTGCTGAGGAGATAGAGAC  1089
      |  ||||||||||||||   ||||||| |||||  || ||||||||
seq2  C--AAGCTAATATGATA--CCAAACTT-TGCTGGAGA-ATAGAGAC  1081