BAC Information

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BAC

Clone NameB6Ng01-138I11
Chromosome13 (Build37)11 (Build37)
Map Location 44,782,937 - 44,784,08149,490,442 - 49,490,482
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
Downstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I11.bB6Ng01-138I11.g
ACCDH937765DH937766
length1,130906
definitionDH937765|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I11, 5' end.DH937766|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,782,937 - 44,784,081)(49,490,442 - 49,490,482)
sequence
gaattcattcactgatcattccattaccatgtattgaatgaacatctgca
gagtgaggagggctcttgtgggtaaaacataagaatggggtcaccaagat
ctctgtccatattccatggtcatttccgttagggtccaggcctggcctta
aaacatttttagggggctgggtatataaactcattgatacagtgcttgct
agcatttattaatccctaggtccagtcgccagtactgaaagtaagctgtt
tcctgaaacaagttttgaatcattgttttaaatgacaataaagtgctgac
ttaatgcagtatgcactaacctacactgtgagtgctaagccgggcaggga
ggttcccaagctgcacgtggtgggtatgtatacacacctttagtcccagt
cccagagacaggctgacctctgtgagttcaaggtcagcctggtctccata
gtgaattccaggacagccagagctatggagtgagaccttgtctcacaaac
aacaaaacccacaaacataaaaccaaactattttccccaagagaggacca
caaaccaacacaaactgtatgctacaggcaagctggagctctctgactgt
ctcctcgcacagtgcatggggctcctttgtcccatgagcctctctctgca
gccttgtgtttctctgtttgtttcctctctctgctgtccggcagcacaga
ttccaaattctccatgcctttgtaagaatgttcacgtttcccctttcccc
taatctgatctccttctttacacttaatggagtttatattcaaagattgc
tctgcgccttttgactaagatcaattggaatatatactctaagaactcaa
agtagggacacctctgttcaaagtagcgttattgacgtagtcaaaggtga
gaacacctacagatagatacatgagcagggactgagacttaactgggcac
tggcgtgcttgcttagccatggttaagcccaggattctgttccttgcatt
gaaacaggaaatgggagatgagcagtagtaaactgtggcatatatccagg
atagtagtgaatgcctgtattcccacacactccagatggtggcaagagga
ctgttgtagtcaaggctagctcggctacat
gaattctttgctgtagaaagatccatcctaaatctggatattctgtgttg
ggaagacccacaccaaatctgggccacactttcttgtggcagcccacata
aaaggacatgaaagaagaatgctttagctttttgcccatttgccctcagt
ctcactggcaaatgtatctatgctgttactgaggcgttcttttgctggta
ttagaaccgacttctccagaattaacttcctgaggctgtagcaccagctt
gggcctgctgagagatccagtcttgtagactgaacaaccacaggatcctt
ggcctttgcactggaagatgtcatttgttggactattcagacaggctact
gttgaggtttggtcttttgcagcgaattgtaaggctaaaggcaggctcct
aagacctggttgccccagagacgagagtgtccgcacatagacccaagtga
caatgtgcaatcttgaccccaagttattgttggttgctgaagatgctgaa
agctgagcagaagagacataggcagggtgtagggttcctgggcttggggg
ctggagaaccacgaagaggaagaagaaggtgacagaggagagagaagcca
ccgtagggtaggtaagtcataaaaacgtacccctaagggctggccagttg
gagttaagagcagtccagatgaaacatagtaaaacttggagttattgata
ggaaagtagattctaatagcatagagagtagataaccagctctagtagcc
caactctagtgctgatcgtcttattataaatatgaaggttgtgtgtgtct
ttcatccggaaataaatggtcaaaggggtggaagctctggattgggacta
aaaatttctacaacaagccactctaataaattgtgtgtgtgtgtgtgtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44782937_44784081
seq2: B6Ng01-138I11.b_46_1175 (reverse)

seq1  ATGTAGCCGAGGCTAGCCTTGAACTACAACAGCTCCTCCTGCCACCATCT  50
      |||||||||| |||||||||| |||||||||| ||||| ||||||||  |
seq2  ATGTAGCCGA-GCTAGCCTTG-ACTACAACAG-TCCTCTTGCCACCA--T  45

seq1  CTGGAGT-AGTGGGAATACAGGCATCTACTACTATACTTGGGTATATGGC  99
      |||||||  ||||||||||||||||  |||||||| | ||| |||||| |
seq2  CTGGAGTGTGTGGGAATACAGGCATTCACTACTAT-CCTGGATATATGCC  94

seq1  ACAGTTTTACTACCTGCTCATCTCCCATATTCCCTGTTTTCAATGCAAGG  149
      |||| ||||||| |||||||||||||  ||| |||| |||||||||||||
seq2  ACAG-TTTACTA-CTGCTCATCTCCC--ATTTCCTG-TTTCAATGCAAGG  139

seq1  AACAGAAATCCTGGGCCTTAACCATGGCTAAGCAAGCACGCCAGTGCCCA  199
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACAG-AATCCTGGG-CTTAACCATGGCTAAGCAAGCACGCCAGTGCCCA  187

seq1  GTTAAGTCTTCAGTCCCTGCTCATGTATCTATCTGTAGGTTGTTCTCACC  249
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  GTTAAGTC-TCAGTCCCTGCTCATGTATCTATCTGTAGG-TGTTCTCACC  235

seq1  TTTTGACTACGTCAATAACGCTACTTTGAACAGAGGTGTCCCTACTTTGA  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGACTACGTCAATAACGCTACTTTGAACAGAGGTGTCCCTACTTTGA  284

seq1  GTTCTTAGAGTATATATTCCAATTGATCTTAGTCAAAAGGCGCAGAGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGAGTATATATTCCAATTGATCTTAGTCAAAAGGCGCAGAGCAA  334

seq1  TCTTTGAATATAAACTCCATTAAGTGTAAAGAAGGAGATCAGATTAGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATATAAACTCCATTAAGTGTAAAGAAGGAGATCAGATTAGGGG  384

seq1  AAAGGGGAAACGTGAACATTCTTACAAAGGCATGGAGAATTTGGAATCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAAACGTGAACATTCTTACAAAGGCATGGAGAATTTGGAATCTG  434

seq1  TGCTGCCGGACAGCAGAGAGAGGAAACAAACAGAGAAACACAAGGCTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCGGACAGCAGAGAGAGGAAACAAACAGAGAAACACAAGGCTGCA  484

seq1  GAGAGAGGCTCATGGGACAAAGGAGCCCCATGCACTGTGCGAGGAGACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGCTCATGGGACAAAGGAGCCCCATGCACTGTGCGAGGAGACAG  534

seq1  TCAGAGAGCTCCAGCTTGCCTGTAGCATACAGTTTGTGTTGGTTTGTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGCTCCAGCTTGCCTGTAGCATACAGTTTGTGTTGGTTTGTGGT  584

seq1  CCTCTCTTGGGGAAAATAGTTTGGTTTTATGTTTGTGGGTTTTGTTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGGGGAAAATAGTTTGGTTTTATGTTTGTGGGTTTTGTTGTTT  634

seq1  GTGAGACAAGGTCTCACTCCATAGCTCTGGCTGTCCTGGAATTCACTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAAGGTCTCACTCCATAGCTCTGGCTGTCCTGGAATTCACTATG  684

seq1  GAGACCAGGCTGACCTTGAACTCACAGAGGTCAGCCTGTCTCTGGGACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGGCTGACCTTGAACTCACAGAGGTCAGCCTGTCTCTGGGACTG  734

seq1  GGACTAAAGGTGTGTATACATACCCACCACGTGCAGCTTGGGAACCTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAGGTGTGTATACATACCCACCACGTGCAGCTTGGGAACCTCCC  784

seq1  TGCCCGGCTTAGCACTCACAGTGTAGGTTAGTGCATACTGCATTAAGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGCTTAGCACTCACAGTGTAGGTTAGTGCATACTGCATTAAGTCA  834

seq1  GCACTTTATTGTCATTTAAAACAATGATTCAAAACTTGTTTCAGGAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTATTGTCATTTAAAACAATGATTCAAAACTTGTTTCAGGAAACA  884

seq1  GCTTACTTTCAGTACTGGCGACTGGACCTAGGGATTAATAAATGCTAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTTCAGTACTGGCGACTGGACCTAGGGATTAATAAATGCTAGCA  934

seq1  AGCACTGTATCAATGAGTTTATATACCCAGCCCCCTAAAAATGTTTTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTATCAATGAGTTTATATACCCAGCCCCCTAAAAATGTTTTAAG  984

seq1  GCCAGGCCTGGACCCTAACGGAAATGACCATGGAATATGGACAGAGATCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCTGGACCCTAACGGAAATGACCATGGAATATGGACAGAGATCT  1034

seq1  TGGTGACCCCATTCTTATGTTTTACCCACAAGAGCCCTCCTCACTCTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCCCATTCTTATGTTTTACCCACAAGAGCCCTCCTCACTCTGCA  1084

seq1  GATGTTCATTCAATACATGGTAATGGAATGATCAGTGAATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCATTCAATACATGGTAATGGAATGATCAGTGAATGAATTC  1130

seq1: chr11_49490442_49490482
seq2: B6Ng01-138I11.g_931_971 (reverse)

seq1  ACACACACACACACACACACACACAATGTTTAAAAGTGGCT  41
      ||||||||||||||||||||||||||| | | | |||||||
seq2  ACACACACACACACACACACACACAATTTATTAGAGTGGCT  41