BAC Information

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BAC

Clone NameB6Ng01-138K10
Chromosome3 (Build37)11 (Build37)
Map Location 32,858,351 - 32,859,53214,073,267 - 14,073,326
singlet/doubletsingletsinglet
Overlap genePex2
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K10.bB6Ng01-138K10.g
ACCDH937851DH937852
length1,164961
definitionDH937851|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K10, 5' end.DH937852|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,858,351 - 32,859,532)(14,073,267 - 14,073,326)
sequence
gaattcctccaactgcttcttatggtttaaagaaaacaagatgccttcca
agcatctggaaagtgacacagatggtcacagctttgggcagctaacacag
tgctagggaatattaaccttcctgctgttatcagccatggggccctaggt
gatccctaaaagttcagcatcatcctgtttccctgccagtgagaatcagg
gctctaaccactgtggcccacttcctttattcatgattctgaggtgaaat
aggtaggccaggaacttatcagaaggtgtgcaccaacattcttcaagcca
gaacccacaagcctccatctttctctacccctgagaagtaccactctcgc
tttcatggctcctggatcctttgagagactcatttctttctacttgctct
ggataactgaagtattctcttcaggcttagtaacactgaagccaaccagg
ggggcagctcataccgacagttctatctgagttgaggagcccacactgcc
cctcatgaagtaagagggtgaatgccctggctttcctgatagggcatgaa
taagaaagttaaagggaaaacaatacttactggcatacagaacctttcta
cagaaacgacaaagatgcataggcaaatgtgagattctcctgtcctgcac
caagagtcaatggccttgaaatccaaaggaactgaaatcctgtgactccc
tcaccagagcaataaactcaggctctctgccctccttgtatggtgctctg
cacacagtaagatcagtcctctttggtttgtacccagggctacctaagtc
cctgcctaggcagcccaagagagctgcttcaaatcttatattctaggagc
aactcagttcagcctcccttctaaactacatctactactacatttgaaac
tatctcaaagtgcagggtgcccaacttaggatagcttaatatatatagtt
taacttcacaatggtgtatagtggcattcactcatatgaattgaacttcc
aattttgaccttcactagactgtcaatatgcagtatggcttcgccctccc
cccccccccctgccagtgctggtagcactcatcagtcagcccaccactgc
aaagtattccccagtacttgcagtggctgggtcctaagccagggctcgaa
agttaggttcatta
gaattcatttttgaccccctgccccaaatttgaataatggttactagtct
taagaaacctagctatagtgtttgttgtctagtctctgtatgctgagaaa
gtacagctttaaatgaagtcttgactggaataatctgtgatgttggacaa
tttgtgccagttgatttgaagttgtcttggaagcaagtcttttgaggaaa
aagcaggatgctggaacagtatgtctcagaatctcagcatccctgagggt
ggatcttgtttggactttttgtctggttgttagtctctgtgaacatataa
gctctcaaaagtaatatacatactaatgaaaagctttggcatccaggagg
taaactgaggcaggcagcaagtgggagtcagtgcttagagctgctcttgg
gggtcagtctagatactgacagggactgctgcctgtggcagccagtgatt
agagaagttactcagcagacttttttctgaggggaaaaaacaacttaatt
tactggggctggtattccctgtggccagcaaaaatctctgaactcttaac
tccttggagcctgcaagatagaaaaggaaagagagaaaattcacatgtac
atatacatacaaactgagtagatgaagcaaaaggcagacttcagtaactt
taatacatataaatacatacatacatgcatacatagatacatagatatat
tcatgcatatagatgtgtgtgcagacagacatatacacactcacacagtg
aatagatggagcaaaactccaacaagcaggcttcaagcatctcacacata
cacatatatacatataagcatacagtgatgggtggaaagaacacttttcc
aaccactttattctttctcccatagcttatatatcccagcaaaatctttt
caagcagtgtaaaatcacaatgtgattacattttagtttcttctagtgaa
tggttatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32858351_32859532
seq2: B6Ng01-138K10.b_46_1209 (reverse)

seq1  TAATGAACCTAACCTACTGAGCACTGTGCCTTAATGACACAGCCCACTGC  50
      ||||||||||||| | | |||| ||| ||  | | ||| ||| |||||||
seq2  TAATGAACCTAACTTTC-GAGCCCTG-GC--TTAGGACCCAG-CCACTGC  45

seq1  AAAGTACTGGGTGTATACTTTTGCAGTTGTGTGCTTGACTGATGAGTGCT  100
       |||||||||| | |||| |||||||| ||| || |||||||||||||||
seq2  -AAGTACTGGG-GAATAC-TTTGCAGTGGTGGGC-TGACTGATGAGTGCT  91

seq1  ACCCAGCACTGGCAGGGGGGGGGGGGGAGGGCGGAGCCATACTGCATATT  150
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  A-CCAGCACTGGCAGGGGGGGGGGGGGAGGGCGAAGCCATACTGCATATT  140

seq1  GACAGTCTAGGTGAAGGTCAAAATTGGAAGTTCAATTCATATTGAGTGAA  200
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GACAGTCTA-GTGAAGGTCAAAATTGGAAGTTCAATTCATA-TGAGTGAA  188

seq1  TGCCACTTATACACCATTGTGAAGTTAAACTATATTATATTAAGCTATCC  250
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCCAC-TATACACCATTGTGAAGTTAAACTATA-TATATTAAGCTATCC  236

seq1  TAAGTTGGGCACCCCTGCACTTTGAGATAGTTTCAAATGTAGTAGTAGAT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGGCA-CCCTGCACTTTGAGATAGTTTCAAATGTAGTAGTAGAT  285

seq1  GTAGTTTAAGAAGGGAGGCCTGAACCTGAGTTGCTCCTAGAATATAAAGA  350
      ||||||| |||||||||| ||||| |||||||||||||||||||| ||||
seq2  GTAGTTT-AGAAGGGAGG-CTGAA-CTGAGTTGCTCCTAGAATAT-AAGA  331

seq1  TTTGAAGCAGCTCTCTTGGGCTGCCTAGGCAGGGACTTAGGTAGCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCAGCTCTCTTGGGCTGCCTAGGCAGGGACTTAGGTAGCCCTGG  381

seq1  GTACAAACC-AAGAGGACTGATCTTACTGTGTGCAGAGCACCATACAAGG  449
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACCAAAGAGGACTGATCTTACTGTGTGCAGAGCACCATACAAGG  431

seq1  AGGGCAGAGAGCCTGAGTTTATTGCTCTGGTGAGGGAGTCACAGGATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAGAGCCTGAGTTTATTGCTCTGGTGAGGGAGTCACAGGATTTC  481

seq1  AGTTCCTTTGGATTTCAAGGCCATTGACTCTTGGTGCAGGACAGGAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTGGATTTCAAGGCCATTGACTCTTGGTGCAGGACAGGAGAAT  531

seq1  CTCACATTTGCCTATGCATCTTTGTCGTTTCTGTAGAAAGGTTCTGTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTGCCTATGCATCTTTGTCGTTTCTGTAGAAAGGTTCTGTATG  581

seq1  CCAGTAAGTATTGTTTTCCCTTTAACTTTCTTATTCATGCCCTATCAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGTATTGTTTTCCCTTTAACTTTCTTATTCATGCCCTATCAGGA  631

seq1  AAGCCAGGGCATTCACCCTCTTACTTCATGAGGGGCAGTGTGGGCTCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGCATTCACCCTCTTACTTCATGAGGGGCAGTGTGGGCTCCTC  681

seq1  AACTCAGATAGAACTGTCGGTATGAGCTGCCCCCCTGGTTGGCTTCAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGATAGAACTGTCGGTATGAGCTGCCCCCCTGGTTGGCTTCAGTG  731

seq1  TTACTAAGCCTGAAGAGAATACTTCAGTTATCCAGAGCAAGTAGAAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGCCTGAAGAGAATACTTCAGTTATCCAGAGCAAGTAGAAAGAA  781

seq1  ATGAGTCTCTCAAAGGATCCAGGAGCCATGAAAGCGAGAGTGGTACTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTCTCAAAGGATCCAGGAGCCATGAAAGCGAGAGTGGTACTTCT  831

seq1  CAGGGGTAGAGAAAGATGGAGGCTTGTGGGTTCTGGCTTGAAGAATGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGAGAAAGATGGAGGCTTGTGGGTTCTGGCTTGAAGAATGTTG  881

seq1  GTGCACACCTTCTGATAAGTTCCTGGCCTACCTATTTCACCTCAGAATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACCTTCTGATAAGTTCCTGGCCTACCTATTTCACCTCAGAATCA  931

seq1  TGAATAAAGGAAGTGGGCCACAGTGGTTAGAGCCCTGATTCTCACTGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGGAAGTGGGCCACAGTGGTTAGAGCCCTGATTCTCACTGGCA  981

seq1  GGGAAACAGGATGATGCTGAACTTTTAGGGATCACCTAGGGCCCCATGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAGGATGATGCTGAACTTTTAGGGATCACCTAGGGCCCCATGGC  1031

seq1  TGATAACAGCAGGAAGGTTAATATTCCCTAGCACTGTGTTAGCTGCCCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAGCAGGAAGGTTAATATTCCCTAGCACTGTGTTAGCTGCCCAA  1081

seq1  AGCTGTGACCATCTGTGTCACTTTCCAGATGCTTGGAAGGCATCTTGTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGACCATCTGTGTCACTTTCCAGATGCTTGGAAGGCATCTTGTTT  1131

seq1  TCTTTAAACCATAAGAAGCAGTTGGAGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  TCTTTAAACCATAAGAAGCAGTTGGAGGAATTC  1164

seq1: chr11_14073267_14073326
seq2: B6Ng01-138K10.g_716_759 (reverse)

seq1  TATGTATATATGTATGTACCTCTGTATGTATATATGAACCTGCATATTTA  50
      ||||||| |||||||| |    |||||||||             ||||||
seq2  TATGTATCTATGTATGCA----TGTATGTAT------------GTATTTA  34

seq1  TATGTATTAA  60
      ||||||||||
seq2  TATGTATTAA  44