BAC Information

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BAC

Clone NameB6Ng01-138L21
Chromosome11 (Build37)
Map Location 38,753,371 - 38,950,608
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138L21.bB6Ng01-138L21.g
ACCDH937914DH937915
length1,038995
definitionDH937914|Mus musculus domesticus DNA, BAC clone: B6Ng01-138L21, 5' end.DH937915|Mus musculus domesticus DNA, BAC clone: B6Ng01-138L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,753,371 - 38,754,413)(38,949,604 - 38,950,608)
sequence
gaattcaaagacatagaaatatttttaatcctcctacatcaaggaccagc
taccagataaaccactgttgatatgtaggctcctggaaatattcttaaag
cagattcccataaactgtcaaaatcccaagtaggagccattttgatgggt
ctcctcacttatacaaccaggagagattgtcaattcctgttttaaactac
tggattttttttttttttggtgtgatttgatattcaacagtaaaagactc
agtaggctatttatatttaaaccaaagacagaaatggtaagcttgggaat
ggagagaaggaggaaaagtgatagaagtggagagagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagagaa
agaagagaattctacaaactttatggatctggaacctgtctcatttgtca
ttgttatccagtttaccatcttctattctcactgttacaaggttggtttg
ctttgcctttatttgcattctaaagtatatgtaaaagactcagtgctcag
tgtttcagtatatatgccttgttgaacatattctataggtcatcatgatg
catatggaggagattcaccacaaaattattttaatttgctaaagtatgaa
cattagcatcgagcctttacctgctcttcagtggctagaattctgagaga
agaacatgtgtcagaattatccagaagtcttcttgacttaaggcctgagt
ttggcctaattatcctccagttaattcaaattgagtagctgcaatattca
tcaatatttaaattcctgtatcactgaaacactgtcaatctcattttttt
atagccagctgcttccacaaagacacacaaaagcaagtgagactagttgc
ttctatcgacttcaagtcgtagtaatgtcaaagaaagtagagaagatatt
ctgtacgcgagaatgtggattgtcgtctgccgacataatttcttctcacg
catactgtaatgcttctttaccacacatttagatggga
gaattctcaggctcagctgaaagattactgagtgttctttttctttccat
tatacaatctcattcatattaaacattaggggaagtctttgtgcatttta
atttccggtaatatttagcaactcaagcatatagcatagaaattaaacag
gtttattactattctttcaaagaatattttacttgtgacagaattatcag
ttagaacaaccttaatgatatttcaaccctgatataatatctgttaaatt
atgactagataatttgtaacccctgtagcaccaagaaaataactttccaa
tactttaccattgaaatgcattcatcagtcacaaactaatcttttcatta
gggatgtgattcaagtttcaaaagagagtgtagaaatcttcaataatatc
caggcagtaaaatgtgattgaaaatcatatcaacatgctttgccgttggt
aatctccatgataaaaatgcaacttaaatgaaaaagaaatcaacttgatg
acagcgtatttccttgtgataattcctattttccatgaacaatggttaat
taggtgaagagcatagaaagcagtggattgtattgctacagcttaccaga
ttgcccacattgtttaaaaatatattcaaatacatctaggcttctacacc
tcagaggtcagagcaaggaatgtttaaatttaagaaaagataatgaaaat
tttaatttcccgtaaagatgaaatatgcaatatgtgttagatgactttct
tatatccaatgtgtcagtttgggccattataatattcagactgaataaac
ttatatttttagcttaaatattatatgaataaatggtcgaactaaaacac
aagtactgatgacatgaattgaacttaatttcttctaaattggcctatgt
gtgtttgtactcactggtataaatttttttttttttttttttttaatttt
catgcatcattgcctcattttattttaatttttttccatttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38753371_38754413
seq2: B6Ng01-138L21.b_46_1083

seq1  GAATTCAAAGACATAGAAATATTTTTAATCCTCCTACATCAAGGACCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACATAGAAATATTTTTAATCCTCCTACATCAAGGACCAGC  50

seq1  TACCAGATAAACCACTGTTGATATGTAGGCTCCTGGAAATATTCTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATAAACCACTGTTGATATGTAGGCTCCTGGAAATATTCTTAAAG  100

seq1  CAGATTCCCATAAACTGTCAAAATCCCAAGTAGGAGCCATTTTGATGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCATAAACTGTCAAAATCCCAAGTAGGAGCCATTTTGATGGGT  150

seq1  CTCCTCACTTATACAACCAGGAGAGATTGTCAATTCCTGTTTTAAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTTATACAACCAGGAGAGATTGTCAATTCCTGTTTTAAACTAC  200

seq1  TGGATTTTTTTTTTTTTTGGTGTGATTTGATATTCAACAGTAAAAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTTTTTTTTTTGGTGTGATTTGATATTCAACAGTAAAAGACTC  250

seq1  AGTAGGCTATTTATATTTAAACCAAAGACAGAAATGGTAAGCTTGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTATTTATATTTAAACCAAAGACAGAAATGGTAAGCTTGGGAAT  300

seq1  GGAGAGAAGGAGGAAAAGTGATAGAAGTGGAGAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGAGGAAAAGTGATAGAAGTGGAGAGAGAGAGAGAGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  400

seq1  AGAAGAGAATTCTACAAACTTTATGGATCTGGAACCTGTCTCATTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAATTCTACAAACTTTATGGATCTGGAACCTGTCTCATTTGTCA  450

seq1  TTGTTATCCAGTTTACCATCTTCTATTCTCACTTTTACAAGGTTGGTTTG  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGTTATCCAGTTTACCATCTTCTATTCTCACTGTTACAAGGTTGGTTTG  500

seq1  CTTTGCCTTTATTTGCATTCTAAAGTATATGTAAAAGACTCAGTGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTTTATTTGCATTCTAAAGTATATGTAAAAGACTCAGTGCTCAG  550

seq1  TGTTTCAGTATATATGCCTTGTTGAACATATTCTATAGGTCATCATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTATATATGCCTTGTTGAACATATTCTATAGGTCATCATGATG  600

seq1  CATATGGAGGAGATTCACCACAAAATTATTTTAATTTGCTAAAGTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGAGGAGATTCACCACAAAATTATTTTAATTTGCTAAAGTATGAA  650

seq1  CATTAGCATCGAGCCTTTACCTGCTCTTCAGTGGCTAGAATTCTGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCATCGAGCCTTTACCTGCTCTTCAGTGGCTAGAATTCTGAGAGA  700

seq1  AGAACATGTGTCAGAATTATCCAGAAGTCTTCTTGACTTAAGGCCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGTGTCAGAATTATCCAGAAGTCTTCTTGACTTAAGGCCTGAGT  750

seq1  TTGGCCTAATTATCCTCCAGTTAATTCAAATTGAGTAGCTGCAATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAATTATCCTCCAGTTAATTCAAATTGAGTAGCTGCAATATTCA  800

seq1  TCAATATTTAAATTTCCTGTATCATTTAAACACTGTCAATCCCATTTTTT  850
      |||||||||||| ||||||||||| | |||||||||||||| ||||||||
seq2  TCAATATTTAAA-TTCCTGTATCACTGAAACACTGTCAATCTCATTTTTT  849

seq1  TATAGCCAGCTGCTTCCACAAAGACACAC-AAAGCAAGTGAAGACATGTT  899
      ||||||||||||||||||||||||||||| |||||||||| ||||  |||
seq2  TATAGCCAGCTGCTTCCACAAAGACACACAAAAGCAAGTG-AGACTAGTT  898

seq1  GCTTATATCAAC-TCAAGGCATAGAATTGTCAAAGAAAGTAGA-AATATA  947
      |||| |||| || ||||| | ||| | |||||||||||||||| || |||
seq2  GCTTCTATCGACTTCAAGTCGTAGTAATGTCAAAGAAAGTAGAGAAGATA  948

seq1  ATTTGTTACCCAAG-ATGTGGATTTCCTTCTGCCTGACATACATTTCTTC  996
       | || ||| | || |||||||||  | |||||| |||||| ||||||| 
seq2  TTCTG-TACGCGAGAATGTGGATTGTCGTCTGCC-GACATA-ATTTCTT-  994

seq1  CTACCACATCCTGTTAGTGCTTCTTTACCACGACATTTTATATGGGA  1043
      ||  | ||| ||| || |||||||||||||| ||| |||| ||||||
seq2  CTCACGCATACTG-TAATGCTTCTTTACCAC-ACA-TTTAGATGGGA  1038

seq1: chr11_38949604_38950608
seq2: B6Ng01-138L21.g_65_1059 (reverse)

seq1  TAAAAAATGGAAAAAAAAATAAAATAAAATGAGCAAATGATGCATGAAAA  50
      |||||||||| ||||||| ||||||||||||||  |||||||||||||||
seq2  TAAAAAATGG-AAAAAAATTAAAATAAAATGAGGCAATGATGCATGAAAA  49

seq1  TTAAAAAAAAAAAAAAAAAAAAAAAAAAATTTATACCAGTGAGTACAAAC  100
      ||      ||||||||||||||||||||||||||||||||||||||||||
seq2  TT------AAAAAAAAAAAAAAAAAAAAATTTATACCAGTGAGTACAAAC  93

seq1  ACAACATAGGCCAATTTAGAAGAAATTAAGTTCAAATTCATGTCATCAGT  150
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AC-ACATAGGCCAATTTAGAAGAAATTAAGTTC-AATTCATGTCATCAGT  141

seq1  ACTTGTGTTTTAGTTCGACCATTTATTCATATAATTATTTAAGCTAAAAA  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTTGTGTTTTAGTTCGACCATTTATTCATATAA-TATTTAAGCTAAAAA  190

seq1  TATAAGTTTATTCAGTCTGAATATTATAATGGCCCAAACTGACACATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTTATTCAGTCTGAATATTATAATGGCCCAAACTGACACATTGG  240

seq1  ATATAAGAAAGTCATCTAACACATATTGCATATTTCATCTTTACGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAAAGTCATCTAACACATATTGCATATTTCATCTTTACGGGAAA  290

seq1  TTAAAATTTTCATTATCTTTTCTTAAATTTAAACATTCCTTGCTCTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTCATTATCTTTTCTTAAATTTAAACATTCCTTGCTCTGACC  340

seq1  TCTGAGGTGTAGAAGCCTAGATGTATTTGAATATATTTTTAAACAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTGTAGAAGCCTAGATGTATTTGAATATATTTTTAAACAATGTG  390

seq1  GGCAATCTGGTAAGCTGTAGCAATACAATCCACTGCTTTCTATGCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTGGTAAGCTGTAGCAATACAATCCACTGCTTTCTATGCTCTTC  440

seq1  ACCTAATTAACCATTGTTCATGGAAAATAGGAATTATCACAAGGAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATTAACCATTGTTCATGGAAAATAGGAATTATCACAAGGAAATAC  490

seq1  GCTGTCATCAAGTTGATTTCTTTTTCATTTAAGTTGCATTTTTATCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATCAAGTTGATTTCTTTTTCATTTAAGTTGCATTTTTATCATGG  540

seq1  AGATTACCAACGGCAAAGCATGTTGATATGATTTTCAATCACATTTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCAACGGCAAAGCATGTTGATATGATTTTCAATCACATTTTACT  590

seq1  GCCTGGATATTATTGAAGATTTCTACACTCTCTTTTGAAACTTGAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGATATTATTGAAGATTTCTACACTCTCTTTTGAAACTTGAATCAC  640

seq1  ATCCCTAATGAAAAGATTAGTTTGTGACTGATGAATGCATTTCAATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAATGAAAAGATTAGTTTGTGACTGATGAATGCATTTCAATGGTA  690

seq1  AAGTATTGGAAAGTTATTTTCTTGGTGCTACAGGGGTTACAAATTATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGGAAAGTTATTTTCTTGGTGCTACAGGGGTTACAAATTATCTA  740

seq1  GTCATAATTTAACAGATATTATATCAGGGTTGAAATATCATTAAGGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTTAACAGATATTATATCAGGGTTGAAATATCATTAAGGTTGT  790

seq1  TCTAACTGATAATTCTGTCACAAGTAAAATATTCTTTGAAAGAATAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGATAATTCTGTCACAAGTAAAATATTCTTTGAAAGAATAGTAA  840

seq1  TAAACCTGTTTAATTTCTATGCTATATGCTTGAGTTGCTAAATATTACCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGTTTAATTTCTATGCTATATGCTTGAGTTGCTAAATATTACCG  890

seq1  GAAATTAAAATGCACAAAGACTTCCCCTAATGTTTAATATGAATGAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAATGCACAAAGACTTCCCCTAATGTTTAATATGAATGAGATT  940

seq1  GTATAATGGAAAGAAAAAGAACACTCAGTAATCTTTCAGCTGAGCCTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATGGAAAGAAAAAGAACACTCAGTAATCTTTCAGCTGAGCCTGAG  990

seq1  AATTC  1005
      |||||
seq2  AATTC  995