BAC Information

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BAC

Clone NameB6Ng01-139A20
Chromosome11 (Build37)
Map Location 23,177,002 - 23,292,300
singlet/doubletdoublet
Overlap geneXpo1, LOC100042202
Upstream geneEhbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875
Downstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A20.bB6Ng01-139A20.g
ACCDH938136DH938137
length1,1121,085
definitionDH938136|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A20, 5' end.DH938137|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,291,171 - 23,292,300)(23,177,002 - 23,178,104)
sequence
gaattcttaagagtttgttgcagcttatctagcccctgacttcagttcct
acgacctccccatacttcacaatctgttttttagctaccaggctccatgc
ttttcttgttttaagatagcagttcacaaatgtaggtgaggttagactgc
agctctctgtgtggatcaggctgaacttgaaatcagagtctacctcttcc
tcctgagtgattggataaaggagtatgctggcctgctcagccactgttct
tcctgtaaaatgtgtcgccccacctaaagaaataaaatgtctgccctagg
agttcacagagcatgtaactcgattttcctcaaggcactcaaaatgagag
cttttgtctaagcatgagtatcagagcacccagctcattttattccttca
gtctatggtatttttccttaaagcatgtctttcctcaacaaaatacaaaa
acaaaaattcagtttcaactggggcacatttatttttcttatacttactg
gtggattccagccactaaaacatagtagtagacactgaaaataattacta
tatagtcaatgacagtataataataataataataataatgctttatcggg
aaataaaacagaattactaaatataacataattatatagcataatttcct
caaacattagtgttgggttttgctgtttttaagttaaataaattaagtta
aataggatctcactatgaagccaagttccctggcacagcttcttacattt
gggattataaccatgtgccagcacacacagttggcataatcggattttat
ctggtgtgagtgagtgactgcttgatcacagttccagagatgaaaccaca
agcctttgtcatttgaaagggaaattctacccgtaggtgaacaccaatct
tgaattttattaagatagaaactctatttcgagagtataaagcaactatt
ttcagagtaatgagtaaacaggacatttcttcacttgatgtggtagcaag
gctgggataaacttgggacttgcacatctaggccagtgctatacaatcag
ctagagctacacctcataataataagttgtcacttcttttccacttatac
caagaatttaat
gaattctaatctgaccccttttcaccctccctagaaagaaaaggtgtata
ttgggaaattgaatatgattcttgttcaggtaagcttcatattagccatc
ttcatcagaaaaattaaatgattagtacttggatcttttcttatcctata
gatgaatatatttttacaattacttttatttttattatgtgtagatgtgt
ttgtctgccagtgagtatatgcatgcaagtgaaggtttccacaaaggtgt
gaaggcatatgaaacctgggccagaattaaagatggttattactgacatg
ggccctgggaattaaagtcaggtttttggttaacatttgataaatctgtg
gtgataaagatcaacaattattttaagactcaattatatggatataatta
tgatttggattacagtatggagtttgaaattttcagtgggactggattct
taaactttgcctgcaattgtgcatttatttcttcacttacatgtggcttt
tctaatctcagtttatatatctttgcatggaatgtggcctcctagttaat
ctccatatgtttttttcttaactatccatgtatttaagtttagaatattt
atattggcccattttctctatttacccccacagaacaccattttgtagaa
tgtttggaatgttttggctatgacactgtccaaattaatagatgactccg
tcagtgcttgagctctccacttcaaagcttataaaatgttcacacagggc
ctggtggtcatctaagagcccgaattcagcttcagcactgcactaaatag
tgttgcaactagactatatccaacaaaaaatgtctgttttgggataggag
ggattgatctgaggggctgaacatttagcttgccgctaacccttcacact
tcgtcatttaatgggtctcacagtttgggttatacatatctatcagctca
ttttatattcatatacaatagaccatatataaatgtgtcagggtattgaa
tggggtctttagcattgaaggctgtttaattatgttaattaataggggaa
atgagtacatttgcttcgagaagttttgtctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23291171_23292300
seq2: B6Ng01-139A20.b_40_1151 (reverse)

seq1  ATTAAATTTTCTTGGTATAAAGTGGAAAAGAAGTTGACAACTTTTATTAT  50
      ||||||  |||||||||| |||||||||||||| |||||||  |||||||
seq2  ATTAAA--TTCTTGGTAT-AAGTGGAAAAGAAG-TGACAAC--TTATTAT  44

seq1  TATTGGGGTTGTAGCTCTAGCTGATTTGGTATAGCACTGGCCTAGATTGT  100
      |||  | | |||||||||||||||||  |||||||||||||||||| |||
seq2  TAT--GAGGTGTAGCTCTAGCTGATT--GTATAGCACTGGCCTAGA-TGT  89

seq1  GCAAAGTCCCAAGTTTAATCCCAAGCCTTGCTACCACAATCAAGTGAAGA  150
      || ||||||||||||| ||||| |||||||||||||| ||||||||||||
seq2  GC-AAGTCCCAAGTTT-ATCCC-AGCCTTGCTACCAC-ATCAAGTGAAGA  135

seq1  AATTGTCCTGTTTTACTCATTACTCTTGAAAATAGTTGCTTTATACTCTC  200
      || ||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AA-TGTCCTG-TTTACTCATTACTC-TGAAAATAGTTGCTTTATACTCTC  182

seq1  GAAATAGAGTTTCTATCTTAATAAAATTCAAGATTGGTGTTCACCTACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAGTTTCTATCTTAATAAAATTCAAGATTGGTGTTCACCTACGG  232

seq1  GTAGAATTTCCCTTTCAAATGACAAAGGCTTGTGGTTTCATCTCTGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTTCCCTTTCAAATGACAAAGGCTTGTGGTTTCATCTCTGGAAC  282

seq1  TGTGATCAAGCAGTCACTCACTCACACCAGATAAAATCCGATTATGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCAAGCAGTCACTCACTCACACCAGATAAAATCCGATTATGCCAA  332

seq1  CTGTGTGTGCTGGCACATGGTTATAATCCCAAATGTAAGAAGCTGTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGCTGGCACATGGTTATAATCCCAAATGTAAGAAGCTGTGCCA  382

seq1  GGGAACTTGGCTTCATAGTGAGATCCTATTTAACTTAATTTATTTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGGCTTCATAGTGAGATCCTATTTAACTTAATTTATTTAACTT  432

seq1  AAAAACAGCAAAACCCAACACTAATGTTTGAGGAAATTATGCTATATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGCAAAACCCAACACTAATGTTTGAGGAAATTATGCTATATAAT  482

seq1  TATGTTATATTTAGTAATTCTGTTTTATTTCCCGATAAAGCATTATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATATTTAGTAATTCTGTTTTATTTCCCGATAAAGCATTATTATT  532

seq1  ATTATTATTATTATACTGTCATTGACTATATAGTAATTATTTTCAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATACTGTCATTGACTATATAGTAATTATTTTCAGTGTC  582

seq1  TACTACTATGTTTTAGTGGCTGGAATCCACCAGTAAGTATAAGAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTATGTTTTAGTGGCTGGAATCCACCAGTAAGTATAAGAAAAATA  632

seq1  AATGTGCCCCAGTTGAAACTGAATTTTTGTTTTTGTATTTTGTTGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCCCAGTTGAAACTGAATTTTTGTTTTTGTATTTTGTTGAGGAA  682

seq1  AGACATGCTTTAAGGAAAAATACCATAGACTGAAGGAATAAAATGAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCTTTAAGGAAAAATACCATAGACTGAAGGAATAAAATGAGCTG  732

seq1  GGTGCTCTGATACTCATGCTTAGACAAAAGCTCTCATTTTGAGTGCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTGATACTCATGCTTAGACAAAAGCTCTCATTTTGAGTGCCTTG  782

seq1  AGGAAAATCGAGTTACATGCTCTGTGAACTCCTAGGGCAGACATTTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCGAGTTACATGCTCTGTGAACTCCTAGGGCAGACATTTTATT  832

seq1  TCTTTAGGTGGGGCGACACATTTTACAGGAAGAACAGTGGCTGAGCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTGGGGCGACACATTTTACAGGAAGAACAGTGGCTGAGCAGGC  882

seq1  CAGCATACTCCTTTATCCAATCACTCAGGAGGAAGAGGTAGACTCTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACTCCTTTATCCAATCACTCAGGAGGAAGAGGTAGACTCTGATT  932

seq1  TCAAGTTCAGCCTGATCCACACAGAGAGCTGCAGTCTAACCTCACCTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCAGCCTGATCCACACAGAGAGCTGCAGTCTAACCTCACCTACA  982

seq1  TTTGTGAACTGCTATCTTAAAACAAGAAAAGCATGGAGCCTGGTAGCTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAACTGCTATCTTAAAACAAGAAAAGCATGGAGCCTGGTAGCTAA  1032

seq1  AAAACAGATTGTGAAGTATGGGGAGGTCGTAGGAACTGAAGTCAGGGGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATTGTGAAGTATGGGGAGGTCGTAGGAACTGAAGTCAGGGGCT  1082

seq1  AGATAAGCTGCAACAAACTCTTAAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  AGATAAGCTGCAACAAACTCTTAAGAATTC  1112

seq1: chr11_23177002_23178104
seq2: B6Ng01-139A20.g_64_1148

seq1  GAATTCTAATCTGACCCCTTTTCACCCTCCCTAGAAAGAAAAGGTGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATCTGACCCCTTTTCACCCTCCCTAGAAAGAAAAGGTGTATA  50

seq1  TTGGGAAATTGAATATGATTCTTGTTCAGGTAAGCTTCATATTAGCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATTGAATATGATTCTTGTTCAGGTAAGCTTCATATTAGCCATC  100

seq1  TTCATCAGAAAAATTAAATGATTAGTACTTGGATCTTTTCTTATCCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGAAAAATTAAATGATTAGTACTTGGATCTTTTCTTATCCTATA  150

seq1  GATGAATATATTTTTACAATTACTTTTATTTTTATTATGTGTAGATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATATTTTTACAATTACTTTTATTTTTATTATGTGTAGATGTGT  200

seq1  TTGTCTGCCAGTGAGTATATGCATGCAAGTGAAGGTTTCCACAAAGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGCCAGTGAGTATATGCATGCAAGTGAAGGTTTCCACAAAGGTGT  250

seq1  GAAGGCATATGAAACCTGGGCCAGAATTAAAGATGGTTATTACTGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATATGAAACCTGGGCCAGAATTAAAGATGGTTATTACTGACATG  300

seq1  GGCCCTGGGAATTAAAGTCAGGTTTTTGGTTAACATTTGATAAATCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGGAATTAAAGTCAGGTTTTTGGTTAACATTTGATAAATCTGTG  350

seq1  GTGATAAAGATCAACAATTATTTTAAGACTCAATTATATGGATATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAAGATCAACAATTATTTTAAGACTCAATTATATGGATATAATTA  400

seq1  TGATTTGGATTACAGTATGGAGTTTGAAATTTTCAGTGGGACTGGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGATTACAGTATGGAGTTTGAAATTTTCAGTGGGACTGGATTCT  450

seq1  TAAACTTTGCCTGCAATTGTGCATTTATTTCTTCACTTACATGTGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGCCTGCAATTGTGCATTTATTTCTTCACTTACATGTGGCTTT  500

seq1  TCTAATCTCAGTTTATATATCTTTGCATGGAATGTGGCCTCCTAGTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTCAGTTTATATATCTTTGCATGGAATGTGGCCTCCTAGTTAAT  550

seq1  CTCCATATGTTTTTTTCTTAACTATCCATGTATTTAAGTTTAGAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATGTTTTTTTCTTAACTATCCATGTATTTAAGTTTAGAATATTT  600

seq1  ATATTGGCCCATTTTCTCTATTTACCCCCACAGAACACCATTTTGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCCCATTTTCTCTATTTACCCCCACAGAACACCATTTTGTAGAA  650

seq1  TGTTTGGAATGTTTTGGCTATGACACTGTCCAAATTAATAGATGACTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAATGTTTTGGCTATGACACTGTCCAAATTAATAGATGACTCCG  700

seq1  TCAGTGCTTGAGCTCTCCACTTCAAAGCTTATAAAATGTTCACACAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTGAGCTCTCCACTTCAAAGCTTATAAAATGTTCACACAGGGC  750

seq1  CTGGTGGTCATCTAAGAGCCCGAATTCAGCTTCAGCACTGCACTAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTCATCTAAGAGCCCGAATTCAGCTTCAGCACTGCACTAAATAG  800

seq1  TGTTGCAACTAGACTATATCCAACAAAAAAATGTCTGTTTTGGGATAGGA  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTTGCAACTAGACTATATCCAAC-AAAAAATGTCTGTTTTGGGATAGGA  849

seq1  GGGATTGATCTGAGGGGCTGAACATTTAGCTTGCCGCTAAACCCTTCACA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGATTGATCTGAGGGGCTGAACATTTAGCTTGCCGCT-AACCCTTCACA  898

seq1  CTTCGTCATTTAATTGGGTCTCACAGTTTGGGTTATACATATCTATCAAG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CTTCGTCATTTAA-TGGGTCTCACAGTTTGGGTTATACATATCTATC-AG  946

seq1  CTCATTTTAATATTCATATACATTAGACCATATATAAATGTGTCAGGGTA  1000
      |||||||| ||||||||||||| |||||||||||||||||||||||||| 
seq2  CTCATTTT-ATATTCATATACAATAGACCATATATAAATGTGTCAGGGT-  994

seq1  ATTGAATGGGGTCTTTAAGCATTGAAAGCGCTGTTTTATATTATGTTATA  1050
      |||||||||||||||| |||||||||   |||||||   ||||||||| |
seq2  ATTGAATGGGGTCTTT-AGCATTGAA--GGCTGTTT--AATTATGTTA-A  1038

seq1  TTAATAGGGGGGAAATGAGTAACACTCTGGCTTTGATGATGTTTTGTCTT  1100
      ||||||  ||||||||||||   ||  | |||| || || ||||||||||
seq2  TTAATA--GGGGAAATGAGT---ACATTTGCTTCGA-GAAGTTTTGTCTT  1082

seq1  TGT  1103
      |||
seq2  TGT  1085