BAC Information

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BAC

Clone NameB6Ng01-139F08
Chromosome11 (Build37)
Map Location 58,939,484 - 59,102,546
singlet/doubletdoublet
Overlap geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a
Upstream geneGemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneWnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139F08.bB6Ng01-139F08.g
ACCDH938346DH938347
length1,152219
definitionDH938346|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F08, 5' end.DH938347|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,939,484 - 58,940,669)(59,102,328 - 59,102,546)
sequence
gaattccatcattgggatgatactaaaaaatgaacagtaacaagttcatg
cacaagtgtaagtcctgtttgctaagcatattcagataaataaacaaatg
aaaagccacaccacatcacagatttgaagccttcatcttgaaatggtaat
attgctaaaattggcctgtatggtcatataaaccatacatccttactttg
tacaattaaaaagaaagagacggctcagtggctaagaacactggccgggg
catccaatgccctcttctggtcttcatgggcaccaggtagacatgtgctg
cacagacatatattctggcacaatacccatatgtataaaataaaataact
ttaaagaaaatagatgaaacaattttaaaagaaaagggaacaaaactgga
ggagttccactccccagttttaaaactaactataaaattactgttgcaca
cacctttaattccagcacttgggaggcagaggcaggcagatttctgagtt
ggaggccagcctggtctacaaagtgagttccaggacagccagggctgcac
agagaaaccctgtctcaaaaaaccaaaaaagaaaaacaaaaacaaaaaca
aaaacaaaaacaaaaacaaacaaacaaaaaaaacaaaaaacaaaaaaatt
actgtcatcctgggctagagacatggcccagcagttagaacatgggctgc
tcttgcagaggactggagattggttcccggcacccatgtgacagctccca
actggttgtacctccaactccagggacctcttgtctgtggtaggtatgca
cacatgcaggccacctttttaattacagtcgtttgccaagtatggtggca
catgcctttaatcccatcacttcggagacaggctggacacatctttgtaa
gttacggccagcccaccctacataacaaggtcaggccagccaagactaca
tagtgagaccttgtcccctcccaaaaattaaaaagaaagaaaattaacag
gatcattaacatactcaaatgtgtcaagactaagcagtaatgagagcatg
cagcaatgagaggacgtgtggagaatattttagccaggtatcgtacccga
ctcaaagcaatgaacaaaaggactaatttagctgatgtatgcattctctc
tc
ctgggctcaagaggaagcgccttcgcccccgctctactcccataaagaag
ggccttgtcgccagcctcctggttaccccgcgtcctgggacttttgtcct
taaggtcgtggggggtcactaaccgggtccgcccaggcccacagaagcat
agcctccttttcacctgggctgttagacccccccctcgggtgcacccagc
attctccaggtgagagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58939484_58940669
seq2: B6Ng01-139F08.b_48_1199

seq1  GAATTCCATCATTGGGATGATACTAAAAAATGAACAGTAACAAGTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTGGGATGATACTAAAAAATGAACAGTAACAAGTTCATG  50

seq1  CACAAGTGTAAGTCCTGTTTGCTAAGCATATTCAGATAAATAAACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGTAAGTCCTGTTTGCTAAGCATATTCAGATAAATAAACAAATG  100

seq1  AAAAGCCACACCACATCACAGATTTGAAGCCTTCATCTTGAAATGGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCACACCACATCACAGATTTGAAGCCTTCATCTTGAAATGGTAAT  150

seq1  ATTGCTAAAATTGGCCTGTATGGTCATATAAACCATACATCCTTACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAAATTGGCCTGTATGGTCATATAAACCATACATCCTTACTTTG  200

seq1  TACAATTAAAAAGAAAGAGACGGCTCAGTGGCTAAGAACACTGGCCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAAAAGAAAGAGACGGCTCAGTGGCTAAGAACACTGGCCGGGG  250

seq1  CATCCAATGCCCTCTTCTGGTCTTCATGGGCACCAGGTAGACATGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATGCCCTCTTCTGGTCTTCATGGGCACCAGGTAGACATGTGCTG  300

seq1  CACAGACATATATTCTGGCACAATACCCATATGTATAAAATAAAATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACATATATTCTGGCACAATACCCATATGTATAAAATAAAATAACT  350

seq1  TTAAAGAAAATAGATGAAACAATTTTAAAAGAAAAGGGAACAAAACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAATAGATGAAACAATTTTAAAAGAAAAGGGAACAAAACTGGA  400

seq1  GGAGTTCCACTCCCCAGTTTTAAAACTAACTATAAAATTACTGTTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCACTCCCCAGTTTTAAAACTAACTATAAAATTACTGTTGCACA  450

seq1  CACCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTT  500

seq1  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTGCAC  550

seq1  AGAGAAACCCTGTCTCAAAAAACCAAAAAAGAAAAACAAAAACAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAACCAAAAAAGAAAAACAAAAACAAAAACA  600

seq1  AAAACAAAAACAAAAACAAACAAACAAAAAAAACAAAAAACAAAAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAACAAACAAACAAAAAAAACAAAAAACAAAAAAATT  650

seq1  ACTGTCATCCTGGGCTAGAGACATGGCCCAGCAGTTAGAACATGGGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCCTGGGCTAGAGACATGGCCCAGCAGTTAGAACATGGGCTGC  700

seq1  TCTTGCAGAGGACTGGAGATTGGTTCCCGGCACCCATGTGACAGCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGAGGACTGGAGATTGGTTCCCGGCACCCATGTGACAGCTCCCA  750

seq1  ACTGGTTGTACCTCCAACTCCAGGGACCTCTTGTCTGTGGTAGGTATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGTACCTCCAACTCCAGGGACCTCTTGTCTGTGGTAGGTATGCA  800

seq1  CACATGCAGGCCACCTTTTTAATTACAGTCGTTTGCCAAGTATGGTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAGGCCACCTTTTTAATTACAGTCGTTTGCCAAGTATGGTGGCA  850

seq1  CATGCCTTTAATCCCATCACTTCGGAGACAGGGCTGGACACATCTTTGTA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGCCTTTAATCCCATCACTTCGGAGACA-GGCTGGACACATCTTTGTA  899

seq1  AGTTTACGGCCAGCCCACCCTACATAACAAGGTCCAGGCCAGCCAAGACT  950
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AG-TTACGGCCAGCCCACCCTACATAACAAGGT-CAGGCCAGCCAAGACT  947

seq1  ACATAGTGAGACCTTGTCCCCTCCCAAAAAATTAAAAAAGAAAAGAAAAA  1000
      ||||||||||||||||||||||||||||||  | ||||||||   | |||
seq2  ACATAGTGAGACCTTGTCCCCTCCCAAAAA--TTAAAAAGAA---AGAAA  992

seq1  ATTAACAGGAATCAATTAAACATAAACTCAAAATGTGTCAAAGACCTAAG  1050
      ||||||||| ||||  | |||||  |||| ||||||||| |||| |||||
seq2  ATTAACAGG-ATCA--TTAACAT--ACTC-AAATGTGTC-AAGA-CTAAG  1034

seq1  CAAGTAAATGAGAAGCCATGCAGCAATGAGAAGGACGTGTGGGAGAATAT  1100
      | ||| |||||||   |||||||||||||| ||||||||| |||||||||
seq2  C-AGT-AATGAGA--GCATGCAGCAATGAG-AGGACGTGT-GGAGAATAT  1078

seq1  TTTAGCCAGTGTACTGACACAGGACCCCAAAAGCAATGAAACAAAAAGTG  1150
      ||||||||| ||| |   ||  ||| |  ||||||||| |||||||   |
seq2  TTTAGCCAG-GTA-TCGTACCCGACTC--AAAGCAATG-AACAAAA--GG  1121

seq1  ACTAATTTTAGCTGATGCATGCACATGCTCTCTCTC  1186
      ||||| ||||||||||| |||  ||| |||||||  
seq2  ACTAA-TTTAGCTGATGTATG--CATTCTCTCTC--  1152

seq1: chr11_59102328_59102546
seq2: B6Ng01-139F08.g_74_292 (reverse)

seq1  CCCCTCTCACCTGGAGAATGCTGGGTGCACCCGAGGGGGGGGTCTAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCACCTGGAGAATGCTGGGTGCACCCGAGGGGGGGGTCTAACAG  50

seq1  CCCAGGTGAAAAGGAGGCTATGCTTCTGTGGGCCTGGGCGGACCCGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGAAAAGGAGGCTATGCTTCTGTGGGCCTGGGCGGACCCGGTTA  100

seq1  GTGACCCCCCACGACCTTAAGGACAAAAGTCCCAGGACGCGGGGTAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCCCACGACCTTAAGGACAAAAGTCCCAGGACGCGGGGTAACCA  150

seq1  GGAGGCTGGCGACAAGGCCCTTCTTTATGGGAGTAGAGCGGGGGCGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGCGACAAGGCCCTTCTTTATGGGAGTAGAGCGGGGGCGAAGG  200

seq1  CGCTTCCTCTTGAGCCCAG  219
      |||||||||||||||||||
seq2  CGCTTCCTCTTGAGCCCAG  219