BAC Information

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BAC

Clone NameB6Ng01-140C12
Chromosome11 (Build37)
Map Location 61,164,655 - 61,302,918
singlet/doubletdoublet
Overlap gene1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7
Upstream geneTom1l2, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik
Downstream gene3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C12.bB6Ng01-140C12.g
ACCDH938961DH938962
length9191,079
definitionDH938961|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C12, 5' end.DH938962|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,302,001 - 61,302,918)(61,164,655 - 61,165,759)
sequence
gaattcttaaatcaatcttttgatatgggtgtggctgatgggccacagga
tgggtaagatggctggcctgagctttagtgggggtctgaatggctgctct
gccagcccaggctgagaaaacccatccctctttcttttccttacagccag
gcagactcagcctcactctcagcctctctccttgctgactggcttgaggg
ccatggcatgaaccctgctgacattgagtctctgcagcgtgagatccaga
tggactccccaatgctgctgtctgacctgcctgacctccaagagccctga
aacccacagcttgtgccttgctgccaggatagacccagcatcaaggtcca
ggggtgcgatccaaagggctgcaccctgggcctggcaggtgaggcttggc
ttgagttactctgcaggttcatctcagacccacctttcagccttaagcag
ccacctgagccaccaccgagccataacaggaccaggagactctactcctc
cctgagcagtcttctccagtattgtattttttattattgttgtaatatgc
atttgttttgccatcaaaatgaggcctgtgaaatacaaggttttctttaa
cctgactctgcgtcatttttggggttggggtaaacacaccaacaatggta
cagtgaggaagagccaggtgctcatatttggagccaagtaaatgtctgtc
cacaaagccagtccatcagatcctgaagtttattgagacctctgctaccc
acccacttccagccccacatattgatccctgctgcctctcatgacgatcg
ctagggcaagtaggggaccaagtcaacaagcctatctttgccatgacgac
tttcagagttgagcagtagccgtggtgagtatgttttggtggtgaatttt
gagggatgaagtgaaggca
gaattctctgtgagttctaggtcaacctagtctacatagtgagtttcagc
acagccaaacttataatagaacttctttttaagtaaatttcagatgtatc
acttactgtataaaatgatagcctcgcaaggagataaataagctaattac
cttggcctaaatagtccacattctctgctatatcaaaacattactttgtg
ctccataaatgttcataattgtgcttgtcaattaaattaatattgtcaat
taaaataatattaataaaaatataaaaaagactacaaaatgtcttcttgg
tattttgtactgattgcatgttatcgtaatatgatttggaattgtgttaa
ataaaaatactactcaaaatccagactcctctgatgtttccactggcctg
ccgtcagcgtatccaagccatgaacaacaccggaaattcggctaaataac
agccacaccttcatggccacagaactctggcgatctccatctttggataa
ccccaatatttttaattaaaatattattgaacttgagaaaatggaaagac
acaagttaagacgtgagactggaggccctcagcagccctcagatgacttc
taatcacctccaagtctgccacactgatggattcaaacaagtcacgccca
agtcagtcagtccttcaccccaaagacaacagttaggctttcctgtaacc
atttagtcacagccagtgaattatcaattattattttagaaaccaaagct
ggataattatctatctccctactttttttttttttctcctaagatgagct
ctggtaatttcagagcgcgtgggtttcagctttttgctccaaacacagca
aggttatacagaggagtctgccccacaatcctccgcgctacatctctcta
cacggtctctgcagagatgtgtgaggtacacaggtgataatggggagcag
aggctgagactgggacaaaggtgacaggagccacccagcttgccttgtgc
tggaaccagtgctgttctagcagtgtatgtcagtccagcatctaacatga
cttcgtgactacctgactcccagatacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61302001_61302918
seq2: B6Ng01-140C12.b_46_964 (reverse)

seq1  TGCCTTCAC-TCATCCCTCAAAATTCACCACCAAAACAATACTCACCACG  49
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TGCCTTCACTTCATCCCTCAAAATTCACCACCAAAAC-ATACTCACCACG  49

seq1  GCTACTGCTCAACTCTG-AAGTCGTCATGGCAAAGATAGGCTTGTTGACT  98
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTACTGCTCAACTCTGAAAGTCGTCATGGCAAAGATAGGCTTGTTGACT  99

seq1  TGGTCCCCTACTTGCCCTAGCGATCGTCATGAGAGGCAGCAGGGATCAAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCTACTTGCCCTAGCGATCGTCATGAGAGGCAGCAGGGATCAAT  149

seq1  ATGTGGGGCTGGAAGTGGGTGGGTAGCAGAGGTCTCAATAAACTTCAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGCTGGAAGTGGGTGGGTAGCAGAGGTCTCAATAAACTTCAGGA  199

seq1  TCTGATGGACTGGCTTTGTGGACAGACATTTACTTGGCTCCAAATATGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGACTGGCTTTGTGGACAGACATTTACTTGGCTCCAAATATGAG  249

seq1  CACCTGGCTCTTCCTCACTGTACCATTGTTGGTGTGTTTACCCCAACCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTCTTCCTCACTGTACCATTGTTGGTGTGTTTACCCCAACCCC  299

seq1  AAAAATGACGCAGAGTCAGGTTAAAGAAAACCTTGTATTTCACAGGCCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACGCAGAGTCAGGTTAAAGAAAACCTTGTATTTCACAGGCCTC  349

seq1  ATTTTGATGGCAAAACAAATGCATATTACAACAATAATAAAAAATACAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGGCAAAACAAATGCATATTACAACAATAATAAAAAATACAAT  399

seq1  ACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAGACTGCTCAGGGAGGAGTAGAGTCTCCTGGTCCTGTTATGG  449

seq1  CTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGTCTGAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGGTGGCTCAGGTGGCTGCTTAAGGCTGAAAGGTGGGTCTGAGAT  499

seq1  GAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGCAGAGTAACTCAAGCCAAGCCTCACCTGCCAGGCCCAGGGTGC  549

seq1  AGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTGGATCGCACCCCTGGACCTTGATGCTGGGTCTATCCTGGCAG  599

seq1  CAAGGCACAAGCTGTGGGTTTCAGGGCTCTTGGAGGTCAGGCAGGTCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACAAGCTGTGGGTTTCAGGGCTCTTGGAGGTCAGGCAGGTCAGA  649

seq1  CAGCAGCATTGGGGAGTCCATCTGGATCTCACGCTGCAGAGACTCAATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCATTGGGGAGTCCATCTGGATCTCACGCTGCAGAGACTCAATGT  699

seq1  CAGCAGGGTTCATGCCATGGCCCTCAAGCCAGTCAGCAAGGAGAGAGGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTTCATGCCATGGCCCTCAAGCCAGTCAGCAAGGAGAGAGGCT  749

seq1  GAGAGTGAGGCTGAGTCTGCCTGGCTGTAAGGAAAAGAAAGAGGGATGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGGCTGAGTCTGCCTGGCTGTAAGGAAAAGAAAGAGGGATGGG  799

seq1  TTTTCTCAGCCTGGGCTGGCAGAGCAGCCATTCAGACCCCCACTAAAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGCCTGGGCTGGCAGAGCAGCCATTCAGACCCCCACTAAAGCT  849

seq1  CAGGCCAGCCATCTTACCCATCCTGTGGCCCATCAGCCACACCCATATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCCATCTTACCCATCCTGTGGCCCATCAGCCACACCCATATCA  899

seq1  AAAGATTGATTTAAGAATTC  918
      ||||||||||||||||||||
seq2  AAAGATTGATTTAAGAATTC  919

seq1: chr11_61164655_61165759
seq2: B6Ng01-140C12.g_68_1146

seq1  GAATTCTCTGTGAGTTCTAGGTCAACCTAGTCTACATAGTGAGTTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGAGTTCTAGGTCAACCTAGTCTACATAGTGAGTTTCAGC  50

seq1  ACAGCCAAACTTATAATAGAACTTCTTTTTAAGTAAATTTCAGATGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAACTTATAATAGAACTTCTTTTTAAGTAAATTTCAGATGTATC  100

seq1  ACTTACTGTATAAAATGATAGCCTCGCAAGGAGATAAATAAGCTAATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGTATAAAATGATAGCCTCGCAAGGAGATAAATAAGCTAATTAC  150

seq1  CTTGGCCTAAATAGTCCACATTCTCTGCTATATCAAAACATTACTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTAAATAGTCCACATTCTCTGCTATATCAAAACATTACTTTGTG  200

seq1  CTCCATAAATGTTCATAATTGTGCTTGTCAATTAAATTAATATTGTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAATGTTCATAATTGTGCTTGTCAATTAAATTAATATTGTCAAT  250

seq1  TAAAATAATATTAATAAAAATATAAAAAAGACTACAAAATGTCTTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATATTAATAAAAATATAAAAAAGACTACAAAATGTCTTCTTGG  300

seq1  TATTTTGTACTGATTGCATGTTATCGTAATATGATTTGGAATTGTGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTACTGATTGCATGTTATCGTAATATGATTTGGAATTGTGTTAA  350

seq1  ATAAAAATACTACTCAAAATCCAGACTCCTCTGATGTTTCCACTGGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATACTACTCAAAATCCAGACTCCTCTGATGTTTCCACTGGCCTG  400

seq1  CCGTCAGCGTATCCAAGCCATGAACAACACCGGAAATTCGGCTAAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGCGTATCCAAGCCATGAACAACACCGGAAATTCGGCTAAATAAC  450

seq1  AGCCACACCTTCATGGCCACAGAACTCTGGCGATCTCCATCTTTGGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACCTTCATGGCCACAGAACTCTGGCGATCTCCATCTTTGGATAA  500

seq1  CCCCAATATTTTTAATTAAAATATTATTGAACTTGAGAAAATGGAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATATTTTTAATTAAAATATTATTGAACTTGAGAAAATGGAAAGAC  550

seq1  ACAAGTTAAGACGTGAGACTGGAGGCCCTCAGCAGCCCTCAGATGACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAAGACGTGAGACTGGAGGCCCTCAGCAGCCCTCAGATGACTTC  600

seq1  TAATCACCTCCAAGTCTGCCACACTGATGGATTCAAACAAGTCACGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCTCCAAGTCTGCCACACTGATGGATTCAAACAAGTCACGCCCA  650

seq1  AGTCAGTCAGTCCTTCACCCCAAAGACAACAGTTAGGCTTTCCTGTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCAGTCCTTCACCCCAAAGACAACAGTTAGGCTTTCCTGTAACC  700

seq1  ATTTAGTCACAGCCAGTGAATTATCAATTATTATTTTAGAAACCAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCACAGCCAGTGAATTATCAATTATTATTTTAGAAACCAAAGCT  750

seq1  GGATAATTATCTATCTCCCTACTTTTTTTTTTTTTCTCCTAAGATGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTATCTATCTCCCTACTTTTTTTTTTTTTCTCCTAAGATGAGCT  800

seq1  CTGGTAATTTCAGAGCGCGTGGG-TTCAGCTCTTTGCTCCAAACACAGCA  849
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CTGGTAATTTCAGAGCGCGTGGGTTTCAGCTTTTTGCTCCAAACACAGCA  850

seq1  AGGTTATACAGAGGAGTCTGCCCCACAATCCTCCGCGCTACATCTCTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATACAGAGGAGTCTGCCCCACAATCCTCCGCGCTACATCTCTCTA  900

seq1  CACGGTCCTCTGCAGAGATGTGTGAGGTACACAGGTGATAAATGGGGAGC  949
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CACGGT-CTCTGCAGAGATGTGTGAGGTACACAGGTGAT-AATGGGGAGC  948

seq1  AGAGGCTGAAGACTGGGACAAAGGTGACAAGGAGGCCACCCCAGCCTTGC  999
      |||||||| ||||||||||||||||||| |||| |||| ||||| |||||
seq2  AGAGGCTG-AGACTGGGACAAAGGTGAC-AGGA-GCCA-CCCAG-CTTGC  993

seq1  CCTTTGTGCTGAGAACACAGGGTGCTGTTCTAGCAAGTTGTATGTCCAGT  1049
      |  |||||||| |||| ||  ||||||||||||||   ||||||| ||||
seq2  C--TTGTGCTG-GAAC-CA--GTGCTGTTCTAGCA--GTGTATGT-CAGT  1034

seq1  CCCAAGCATCCTAACATGGGACTTCCGTGACTCACCTCGAACTCCCCAAG  1099
      ||  ||||| |||||||  ||||| ||||||| ||||   ||||||  ||
seq2  CC--AGCAT-CTAACAT--GACTT-CGTGACT-ACCT--GACTCCC--AG  1073

seq1  ATACTA  1105
      ||||||
seq2  ATACTA  1079