BAC Information

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BAC

Clone NameB6Ng01-140M17
Chromosome11 (Build37)
Map Location 41,770,752 - 41,771,576
singlet/doubletsinglet
Overlap geneGabrg2
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140M17.bB6Ng01-140M17.g
ACCDH939425DH939426
length825553
definitionDH939425|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M17, 5' end.DH939426|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgatatcttgtgacacctacctagaaattatgatgcagagat
ttctttagctagtaaattatagtatcacattaggtgttaatacatttcta
gaactgatagaatatcatttaattaaatgtattgcaataattactgttta
taaacacttcacaggttactagtgaccataactggttgtcataggaagaa
ttttatgtcactaatacatgtttgtaatgttagccatttttatgaagata
tgttttgttaaaaattagccaacatagtaaaaaaatgaaatctactgcaa
tatgtgttgtggcttcatattaaaataatgttttaaatactaacaaattt
aagccataaacatataaaggttaatattatagaaccaagagggtatgtag
gagaaatgcaatgctcataattggtatggtataaaacaccataataaaat
taaataatttcttgataatatcagtagatagtaaaaaaataagaacattc
cacattaaacattttattgtctcagaaaaatgagaaaaatggaagcttgc
atggtgaaggacatttaaaatacaaaacaaaatagtattaaactttattg
tgagagaatgaatgccttctatcaaagactaagacataggatgccctctc
tctacactacagctctttttgttccaaaatgtcatatttaagatttgttt
cagggtcaataaaacaatatattatgttttaaatttttatttatctcatt
tatcttttagttataccatctatttttatagagtatgtggtttaggaaat
agttttagtttaagtatttttgtgg

tgaaattttcatttcaatagaaactgctggtctaactggcaatctgtatg
tagaaaaatgaaaatagattgatatttgtcatcttgcacaaagctcaagt
ccatgtggatcaagaacttcaacataaaaccaggtacattgaatctaata
aaaaagaaagtaggaaagagccttgaacacattggcacaggggaacattt
cctaaacagaactctaatggcttaggctctaagatcaggaattgataaat
gggagctcatgaaactggaaagtgtctgtaaggccaaagacaaagacaat
atgacaaattggcaacctacagattgggaaaaagtcttcactaactccac
atccagtagagagccaatatccaaaatatataaggaactcaagaagctaa
ccaccaagaaaccaaacaaccccaatttaaaaaatggggtatagaactga
actgagaattcccaacagaggaatctcaaatggctgagaagaggttaaag
aaatgccagggccaggaagtgggagtgggtaggttgaggagcagggtggg
gca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41770752_41771576
seq2: B6Ng01-140M17.b_47_871

seq1  GAATTCTATGATATCTTGTGACACCTACCTAGAAATTATGATGCAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGATATCTTGTGACACCTACCTAGAAATTATGATGCAGAGAT  50

seq1  TTCTTTAGCTAGTAAATTATAGTATCACATTAGGTGTTAATACATTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGCTAGTAAATTATAGTATCACATTAGGTGTTAATACATTTCTA  100

seq1  GAACTGATAGAATATCATTTAATTAAATGTATTGCAATAATTACTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATAGAATATCATTTAATTAAATGTATTGCAATAATTACTGTTTA  150

seq1  TAAACACTTCACAGGTTACTAGTGACCATAACTGGTTGTCATAGGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTTCACAGGTTACTAGTGACCATAACTGGTTGTCATAGGAAGAA  200

seq1  TTTTATGTCACTAATACATGTTTGTAATGTTAGCCATTTTTATGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTCACTAATACATGTTTGTAATGTTAGCCATTTTTATGAAGATA  250

seq1  TGTTTTGTTAAAAATTAGCCAACATAGTAAAAAAATGAAATCTACTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTAAAAATTAGCCAACATAGTAAAAAAATGAAATCTACTGCAA  300

seq1  TATGTGTTGTGGCTTCATATTAAAATAATGTTTTAAATACTAACAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTGTGGCTTCATATTAAAATAATGTTTTAAATACTAACAAATTT  350

seq1  AAGCCATAAACATATAAAGGTTAATATTATAGAACCAAGAGGGTATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAAACATATAAAGGTTAATATTATAGAACCAAGAGGGTATGTAG  400

seq1  GAGAAATGCAATGCTCATAATTGGTATGGTATAAAACACCATAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCAATGCTCATAATTGGTATGGTATAAAACACCATAATAAAAT  450

seq1  TAAATAATTTCTTGATAATATCAGTAGATAGTAAAAAAATAAGAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTTCTTGATAATATCAGTAGATAGTAAAAAAATAAGAACATTC  500

seq1  CACATTAAACATTTTATTGTCTCAGAAAAATGAGAAAAATGGAAGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAACATTTTATTGTCTCAGAAAAATGAGAAAAATGGAAGCTTGC  550

seq1  ATGGTGAAGGACATTTAAAATACAAAACAAAATAGTATTAAACTTTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAAGGACATTTAAAATACAAAACAAAATAGTATTAAACTTTATTG  600

seq1  TGAGAGAATGAATGCCTTCTATCAAAGACTAAGACATAGGATGCCCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATGAATGCCTTCTATCAAAGACTAAGACATAGGATGCCCTCTC  650

seq1  TCTACACTACAGCTCTTTTTGTTCCAAAATGTCATATTTAAGATTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTACAGCTCTTTTTGTTCCAAAATGTCATATTTAAGATTTGTTT  700

seq1  CA-GGTCAATAAAACAATATATTATGTTTTAAATTTTTATTTATCTCATT  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAATAAAACAATATATTATGTTTTAAATTTTTATTTATCTCATT  750

seq1  TATCTTTTAGTTATACCATCTATTTTTATAGAGTATGTGGTTTAGGAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTAGTTATACCATCTATTTTTATAGAGTATGTGGTTTAGGAAAT  800

seq1  AGTTTTAGTTTAAGTATTTTGTGTGG  825
      |||||||||||||||||||| |||||
seq2  AGTTTTAGTTTAAGTATTTT-TGTGG  825


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