BAC Information

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BAC

Clone NameB6Ng01-141C14
Chromosome11 (Build37)
Map Location 71,906,554 - 72,021,971
singlet/doubletdoublet
Overlap genePitpnm3, 4933427D14Rik, Txnl5
Upstream geneNlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik
Downstream geneMed31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141C14.bB6Ng01-141C14.g
ACCDH939690DH939691
length1,0761,083
definitionDH939690|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C14, 5' end.DH939691|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,020,871 - 72,021,971)(71,906,554 - 71,907,639)
sequence
gaattcagtaattctaattgtttagcttatcagacaatacctaaaacaca
gagcctgaccaattatctgaggtcctttttacccagctttttaataatat
agtccatgtctggagatacggtatacatgacttactaaggtttgtctcct
acttggcagtagatgaacacacagtcttcggtaacatgcttcagcccctc
tcgaatgactggctcagctttttaaaagagttaaaaagtaattacacatc
aactgcgatagcccacgccctcccgtccccagtcttagactttaaccggt
tgtaagataggatgttaaagtcgcgtgtcctctggactcgtgaatcactt
aagtcctagtcctgattgtctttaagacacaatcagaaaactcagcatac
atatatgatgacggaaagatcaactcctgagtctggtctttttttttttt
atgagacactaatcgtttggggaactgagaattttaaagaacctggttcc
aagatccgaatccatgataaaaatgagggtcatccttgggtggggcagta
agggcctaacgagagacggggtacagctcaggcgcttctgcgggtctgca
ggaccaagatcctcatctcatcccactttctgacttcagcaggggccttc
ttcctagcactgctgtggcgcagcaacccccagtcctggtcccagcctca
ccttccacgcagtccggacaccagctcttcccttcggtatccttagaacc
gctgaagtaggcgaaatggtcttgccctcatgctccttcactgccttgtc
gaactcctcgaagcccagcacgctcacctcctcgaaggtggccatgggtt
acaacagtgcggagaggagcacgggaggagccctagggtcctgcgcctcc
aagcggggcccagtaggcgtggacagttcggtgggcggggccgcgcagca
agtgtgctacggagccttgatagcataacttcttagggcgtctttggtct
gctgagtttcttttgcccagtttcctcaaacaactagaacgctgactgat
ctggtcccactggctctatggacagt
gaattccagagtaattctgtgttgctccctacccgatccccaaaaatgca
tctgaagcaaccctggttctctaagcaagtgccggagtactgtgggatac
cccctccaggatctccctccctcacaggactccagggcagtgctatccag
gaaatgcctctgtcttcccagccagtcctctagggcctgctgtgactcct
tttccaaatgtgtctgactctacatttgtgatgcaagacaccatcctcag
agcccctgtttccacagcccctctgcctgtcacaaccacctccacgcttc
atgtcacctgcatccaagtttctcctcctcagaagggtctgtgaatggaa
actgcatccagctggggtctgagactaggacttgattctcaccaacccac
tgtgtgacccaatgaacctcccttttcctctctgagcttcattcctagat
aacactacgagcccaatgccctcttgagaccctttgggtactgaaagcca
gattgatagacacctgctgtctttcacttactgtgtctatgagagccagt
tatatagcttctatgccacagacttctagaatcgagggctgaatcggtac
cttgctcagaggatccttgtgaagtgagtacttagtgttcttagaacaca
ggcaggtagctaaccaacactcgattcatgaggctcacccttgttgttgt
tgttgttgttgttgctgctgctgctgctactgctgtttattttgacagag
actcactatgtatccctgtctagcctggaactctatgtagaccaggctgg
tcttggactcagagatctgcttgcctatagcctccttcgtgctgaaatca
aaggtgcgtgccaccatgcccagtttgctcttagtgttttacttactgat
ttacttgtgacaactagctcatgatctcttgtctcatcacaacacaagga
ggagtcagatgaacagaagcaatggctaatgtggggggggggacttcaga
gtactcccggagccaacgctacacgacctaataaacaccagacaaaatta
tgttcctataacagtccagttgacaaaaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72020871_72021971
seq2: B6Ng01-141C14.b_48_1123 (reverse)

seq1  ACTGTCCATGAAGCCAGGGTGGGGACCAGACCAGGTCAGGCGTCTAGTTG  50
      |||||||||  ||||||    ||||||||| || |||||   ||||||||
seq2  ACTGTCCATAGAGCCAG---TGGGACCAGATCA-GTCAGCGTTCTAGTTG  46

seq1  TCTGAGGGAAACTGGCGCCAAAAAGAAACTCCAGCAGACCAAAAGGACGG  100
      | ||| ||||||||| ||  |||||||||| ||||||||||||  ||| |
seq2  TTTGA-GGAAACTGG-GC--AAAAGAAACT-CAGCAGACCAAA--GAC-G  88

seq1  CCCTAAGGAGTTATGGCTATTCAAGGCTCCCGTAGCACCACTCTGCTGCG  150
      ||||||| |||||| |||| |||||||| |||||||| |||| |||||| 
seq2  CCCTAAGAAGTTAT-GCTA-TCAAGGCT-CCGTAGCA-CACT-TGCTGC-  132

seq1  GCGGCCCCGCCCACCCGGAACCTTGTCCACGCCTTACTTGGGCCCCGCCT  200
      |||||||||||||||  ||||  |||||||||| ||| ||||||||| ||
seq2  GCGGCCCCGCCCACC--GAAC--TGTCCACGCC-TAC-TGGGCCCCG-CT  175

seq1  TGGGGGCGCAGGACCCTAGGGCTCCTCCCGTGCTCCTCTCCGCACTGTTG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCGCAGGACCCTAGGGCTCCTCCCGTGCTCCTCTCCGCACTGTTG  225

seq1  T-ACCCATGGCCACCTTCGAGGAGGTGAGCGTGCTGGGCTTCGAGGAGTT  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATGGCCACCTTCGAGGAGGTGAGCGTGCTGGGCTTCGAGGAGTT  275

seq1  CGACAAGGCAGTGAAGGAGCATGAGGGCAAGACCATTTTCGCCTACTTCA  349
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGACAAGGCAGTGAAGGAGCATGAGGGCAAGACCA-TTTCGCCTACTTCA  324

seq1  GCGGTTCTAAGGATACCGAAGGGAAGAGCTGGTGTCCGGACTGCGTGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTCTAAGGATACCGAAGGGAAGAGCTGGTGTCCGGACTGCGTGGAA  374

seq1  GGTGAGGCTGGGACCAGGACTGGGGGTTGCTGCGCCACAGCAGTGCTAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCTGGGACCAGGACTGGGGGTTGCTGCGCCACAGCAGTGCTAGG  424

seq1  AAGAAGGCCCCTGCTGAAGTCAGAAAGTGGGATGAGATGAGGATCTTGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCCCCTGCTGAAGTCAGAAAGTGGGATGAGATGAGGATCTTGGT  474

seq1  CCTGCAGACCCGCAGAAGCGCCTGAGCTGTACCCCGTCTCTCGTTAGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGACCCGCAGAAGCGCCTGAGCTGTACCCCGTCTCTCGTTAGGCC  524

seq1  CTTACTGCCCCACCCAAGGATGACCCTCATTTTTATCATGGATTCGGATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCCCCACCCAAGGATGACCCTCATTTTTATCATGGATTCGGATC  574

seq1  TTGGAACCAGGTTCTTTAAAATTCTCAGTTCCCCAAACGATTAGTGTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCAGGTTCTTTAAAATTCTCAGTTCCCCAAACGATTAGTGTCTC  624

seq1  ATAAAAAAAAAAAAGACCAGACTCAGGAGTTGATCTTTCCGTCATCATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAAAGACCAGACTCAGGAGTTGATCTTTCCGTCATCATAT  674

seq1  ATGTATGCTGAGTTTTCTGATTGTGTCTTAAAGACAATCAGGACTAGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCTGAGTTTTCTGATTGTGTCTTAAAGACAATCAGGACTAGGAC  724

seq1  TTAAGTGATTCACGAGTCCAGAGGACACGCGACTTTAACATCCTATCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATTCACGAGTCCAGAGGACACGCGACTTTAACATCCTATCTTA  774

seq1  CAACCGGTTAAAGTCTAAGACTGGGGACGGGAGGGCGTGGGCTATCGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGGTTAAAGTCTAAGACTGGGGACGGGAGGGCGTGGGCTATCGCAG  824

seq1  TTGATGTGTAATTACTTTTTAACTCTTTTAAAAAGCTGAGCCAGTCATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTAATTACTTTTTAACTCTTTTAAAAAGCTGAGCCAGTCATTC  874

seq1  GAGAGGGGCTGAAGCATGTTACCGAAGACTGTGTGTTCATCTACTGCCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCTGAAGCATGTTACCGAAGACTGTGTGTTCATCTACTGCCAA  924

seq1  GTAGGAGACAAACCTTAGTAAGTCATGTATACCGTATCTCCAGACATGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGACAAACCTTAGTAAGTCATGTATACCGTATCTCCAGACATGGA  974

seq1  CTATATTATTAAAAAGCTGGGTAAAAAGGACCTCAGATAATTGGTCAGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTATTAAAAAGCTGGGTAAAAAGGACCTCAGATAATTGGTCAGGC  1024

seq1  TCTGTGTTTTAGGTATTGTCTGATAAGCTAAACAATTAGAATTACTGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTTAGGTATTGTCTGATAAGCTAAACAATTAGAATTACTGAAT  1074

seq1  TC  1101
      ||
seq2  TC  1076

seq1: chr11_71906554_71907639
seq2: B6Ng01-141C14.g_68_1150

seq1  GAATTCCAGAGTAATTCTGTGTTGCTCCCTACCCGATCCCCAAAAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTAATTCTGTGTTGCTCCCTACCCGATCCCCAAAAATGCA  50

seq1  TCTGAAGCAACCCTGGTTCTCTAAGCAAGTGCCGGAGTACTGTGGGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCAACCCTGGTTCTCTAAGCAAGTGCCGGAGTACTGTGGGATAC  100

seq1  CCCCTCCAGGATCTCCCTCCCTCACAGGACTCCAGGGCAGTGCTATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCAGGATCTCCCTCCCTCACAGGACTCCAGGGCAGTGCTATCCAG  150

seq1  GAAATGCCTCTGTCTTCCCAGCCAGTCCTCTAGGGCCTGCTGTGACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTCTGTCTTCCCAGCCAGTCCTCTAGGGCCTGCTGTGACTCCT  200

seq1  TTTCCAAATGTGTCTGACTCTACATTTGTGATGCAAGACACCATCCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATGTGTCTGACTCTACATTTGTGATGCAAGACACCATCCTCAG  250

seq1  AGCCCCTGTTTCCACAGCCCCTCTGCCTGTCACAACCACCTCCACGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGTTTCCACAGCCCCTCTGCCTGTCACAACCACCTCCACGCTTC  300

seq1  ATGTCACCTGCATCCAAGTTTCTCCTCCTCAGAAGGGTCTGTGAATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCTGCATCCAAGTTTCTCCTCCTCAGAAGGGTCTGTGAATGGAA  350

seq1  ACTGCATCCAGCTGGGGTCTGAGACTAGGACTTGATTCTCACCAACCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCCAGCTGGGGTCTGAGACTAGGACTTGATTCTCACCAACCCAC  400

seq1  TGTGTGACCCAATGAACCTCCCTTTTCCTCTCTGAGCTTCATTCCTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACCCAATGAACCTCCCTTTTCCTCTCTGAGCTTCATTCCTAGAT  450

seq1  AACACTACGAGCCCAATGCCCTCTTGAGACCCTTTGGGTACTGAAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTACGAGCCCAATGCCCTCTTGAGACCCTTTGGGTACTGAAAGCCA  500

seq1  GATTGATAGACACCTGCTGTCTTTCACTTACTGTGTCTATGAGAGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATAGACACCTGCTGTCTTTCACTTACTGTGTCTATGAGAGCCAGT  550

seq1  TATATAGCTTCTATGCCACAGACTTCTAGAATCGAGGGCTGAATCGGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCTTCTATGCCACAGACTTCTAGAATCGAGGGCTGAATCGGTAC  600

seq1  CTTGCTCAGAGGATCCTTGTGAAGTGAGTACTTAGTGTTCTTAGAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGAGGATCCTTGTGAAGTGAGTACTTAGTGTTCTTAGAACACA  650

seq1  GGCAGGTAGCTAACCAACACTCGATTCATGAGGCTCACCCTTGTTGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAGCTAACCAACACTCGATTCATGAGGCTCACCCTTGTTGTTGT  700

seq1  TGTTGTTGTTGTTGCTGCTGCTGCTGCTACTGCTGTTTATTTTGACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGCTGCTGCTGCTGCTACTGCTGTTTATTTTGACAGAG  750

seq1  ACTCACTATGTATCCCTGTCTAGCCTGGAACTCTATGTAGACCAGGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATGTATCCCTGTCTAGCCTGGAACTCTATGTAGACCAGGCTGG  800

seq1  TCTTGGACTCAGAGATCTGCCTGCCTATAGCCTCCTTCGTGCTGAAATCA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTGGACTCAGAGATCTGCTTGCCTATAGCCTCCTTCGTGCTGAAATCA  850

seq1  AAGGTGCGTGCCACCATGCCCAGTTTGCTCTTAGTGTTTTACTTACTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCGTGCCACCATGCCCAGTTTGCTCTTAGTGTTTTACTTACTGAT  900

seq1  TTACTTGTGACAACTAGCTCATGATCTCTTGTCCTCATCACAACACAAGG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTACTTGTGACAACTAGCTCATGATCTCTTGT-CTCATCACAACACAAGG  949

seq1  AGGAGCCAGATGGACAGAGCCAATGGCTAATGTGGGGGGGGGGAC-TCAG  999
      ||||| |||||| |||||  ||||||||||||||||||||||||| ||||
seq2  AGGAGTCAGATGAACAGAAGCAATGGCTAATGTGGGGGGGGGGACTTCAG  999

seq1  AGTACTCCCCGGAGCCAACGCTACAGTACTTATTAGACACAGGACAGAGT  1049
      |||||| ||||||||||||||||||  || || || ||||  |||| | |
seq2  AGTACT-CCCGGAGCCAACGCTACACGACCTAATAAACACCAGACAAAAT  1048

seq1  TAGTGTCCTATAACAGTCCAGTTGGAGAAGAAAGGTC  1086
      ||   |||||||||||||||||| || || |||||||
seq2  TATGTTCCTATAACAGTCCAGTT-GACAA-AAAGGTC  1083