BAC Information

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BAC

Clone NameB6Ng01-141E13
Chromosome11 (Build37)
Map Location 74,193,930 - 74,379,340
singlet/doubletdoublet
Overlap geneGarnl4
Upstream geneOlfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412
Downstream geneE130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E13.bB6Ng01-141E13.g
ACCDH939780DH939781
length961705
definitionDH939780|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E13, 5' end.DH939781|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,193,930 - 74,194,902)(74,378,639 - 74,379,340)
sequence
gaattccagggtaccagcagggtccaaaagtgttaagggctagttattgg
cccgggtgaatgacatccatgccttgtacagcactttctacatacatgag
aattctgtccatagctaatatctccccttcctgttttcagagagaaaagt
tgaacccaggaagcaaccaaaccctgaggggcagagagagaggtaccagg
tgcttgtgtgaaagatggcgcttcagttcaaatcctggaggaggcactgc
agcccccagcacaggagactgcaggtatggggttccatacaggagaggga
agccaatagcactaacaatgcaggttacctgctatactgctgttcagcca
gcactcccagtcatctagaacttaccttcatgttaatatcagccatcaga
ttccagtcctaaaatgagatgtgactctggccccttaagtggaatggaga
caccaccagtctcgatgagctattttggagactgaggtcataatcaattc
ttccctcaggcttgtttttaaaatggtaagttggtcctatgcagttgatg
taaccagggataatggcaatcagtctaagacagcttagacttttgctctt
gcattttgtccaggaggaatattaggtgcgaaggaagaccaaagtgtgga
tgcttccatccttcttagagggggaacaaaatactcacaggaggaaatac
agagacaaaaagtggagcagagactgaagaaaggccattcagagactgcc
ccacctggggatcatcccatatacagtcaccaaaccagacactattgtgg
atgcaagaagtgcttgctgacaggagcctgatatagttgtctcctgagag
gctttgccagagcctgactaattcgaggcagatgctcacgccatcactat
actaggctcagggtccttacagaggattagaggaatgactgaggagctga
agggtttgcca
gaattcaggtcctttagaagagcagccagtgctcttaatcaagatgctgc
atctccaactctgttctttttacttttaaaaatgtgacacagtatttcat
taagttgcccagactggccttgtattgcattaatctttcttggggaattg
tgagcagaggtctgtttaccccaggtaaggcaccaatgacagactgaaga
aatggcttcacgcaagtggagcttggtggaccgatgagttggggtgactc
acaggatcatggctgaagggttacacagagtggggacaacttactgatcc
tgatgctgcctgagaagggtcctccttctcgagcaactgtgagttgcttg
tttatctttctgggggagggcatgtattgcagatcgtccactgcttccta
gacctttctcccctttatgatagagtgcttgttagcccaatcttgtgagt
gtctcccgtagataatcagagatattatggtagccatggtcaggggtctg
gagttcagagagagcaacaccttgagtctgtaatcttttctgcctcaacc
tcctcagtagcctgagttacaggtctatacctttatttttttggcagcat
gtctgactttttcccagagcttctcaagggtatatctgtatagtgaatga
ggtgtgagatggtaagcagggctgctgtgggatgtggagtggaaaagtgt
ctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_74193930_74194902
seq2: B6Ng01-141E13.b_48_1008

seq1  GAATTCCAGGGTACCAGCAGGGTCCAAAAGTGTTAAGGGCTAGTTATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTACCAGCAGGGTCCAAAAGTGTTAAGGGCTAGTTATTGG  50

seq1  CCCGGGTGAATGACATCCATGCCTTGTACAGCACTTTCTACATACATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTGAATGACATCCATGCCTTGTACAGCACTTTCTACATACATGAG  100

seq1  AATTCTGTCCATAGCTAATATCTCCCCTTCCTGTTTTCAGAGAGAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCCATAGCTAATATCTCCCCTTCCTGTTTTCAGAGAGAAAAGT  150

seq1  TGAACCCAGGAAGCAACCAAACCCTGAGGGGCAGAGAGAGAGGTACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAGGAAGCAACCAAACCCTGAGGGGCAGAGAGAGAGGTACCAGG  200

seq1  TGCTTGTGTGAAAGATGGCGCTTCAGTTCAAATCCTGGAGGAGGCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTGAAAGATGGCGCTTCAGTTCAAATCCTGGAGGAGGCACTGC  250

seq1  AGCCCCCAGCACAGGAGACTGCAGGTATGGGGTTCCATACAGGAGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAGCACAGGAGACTGCAGGTATGGGGTTCCATACAGGAGAGGGA  300

seq1  AGCCAATAGCACTAACAATGCAGGTTACCTGCTATACTGCTGTTCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAGCACTAACAATGCAGGTTACCTGCTATACTGCTGTTCAGCCA  350

seq1  GCACTCCCAGTCATCTAGAACTTACCTTCATGTTAATATCAGCCATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCCAGTCATCTAGAACTTACCTTCATGTTAATATCAGCCATCAGA  400

seq1  TTCCAGTCCTAAAATGAGATGTGACTCTGGCCCCTTAAGTGGAATGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCCTAAAATGAGATGTGACTCTGGCCCCTTAAGTGGAATGGAGA  450

seq1  CACCACCAGTCTCGATGAGCTATTTTGGAGACTGAGGTCATAATCAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCAGTCTCGATGAGCTATTTTGGAGACTGAGGTCATAATCAATTC  500

seq1  TTCCCTCAGGCTTGTTTTTAAAATGGTAAGTTGGTCCTATGCAGTTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAGGCTTGTTTTTAAAATGGTAAGTTGGTCCTATGCAGTTGATG  550

seq1  TAACCAGGGATAATGGCAATCAGTCTAAGACAGCTTAGACTTTTGCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGGATAATGGCAATCAGTCTAAGACAGCTTAGACTTTTGCTCTT  600

seq1  GCATTTTGTCCAGGAGGAATATTAGGTGCGAAGGAAGACCAAAGTGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGTCCAGGAGGAATATTAGGTGCGAAGGAAGACCAAAGTGTGGA  650

seq1  TGCTTCCATCCTTCTTAGGAGGGGGAACAAAATACTCACAGGAGGAAATA  700
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTTCCATCCTTCTTA-GAGGGGGAACAAAATACTCACAGGAGGAAATA  699

seq1  CAGAGACAAAAAGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTG  750
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  CAGAGACAAAAAGTGGAGCAGAGACTGAA-GAAAGGCCATTCAGAGACTG  748

seq1  CCCCACCTGGGGATCCATCCCATATACAGTCACCAAACCCAGACACTATT  800
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  CCCCACCTGGGGAT-CATCCCATATACAGTCACCAAA-CCAGACACTATT  796

seq1  GTGGATGCCAAGAAGTGCTTGCTGACAGGAGCCTGATATAGCTGTCTCCT  850
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGGATG-CAAGAAGTGCTTGCTGACAGGAGCCTGATATAGTTGTCTCCT  845

seq1  GAGAGGCTCTGCCAGAGCCTGACAAATACAGAGGCAGATGCTCACAGCCA  900
      |||||||| |||||||||||||| ||| | ||||||||||||||| ||| 
seq2  GAGAGGCTTTGCCAGAGCCTGACTAATTC-GAGGCAGATGCTCAC-GCC-  892

seq1  ACCACTAGACTAAGCACAGGGTCCCCAACAGAGGAGTTAGAGAAATGACT  950
      | ||||| |||| || |||||| ||  |||||||| |||||| |||||||
seq2  ATCACTATACTAGGCTCAGGGT-CCTTACAGAGGA-TTAGAGGAATGACT  940

seq1  GAAGGAGCTGAAGTGGTTTGCCA  973
      | ||||||||||| |||||||||
seq2  G-AGGAGCTGAAG-GGTTTGCCA  961

seq1: chr11_74378639_74379340
seq2: B6Ng01-141E13.g_69_773 (reverse)

seq1  -AAAAACACTTCTCCACTCCACATCCCACAGCAGCCCTGCTTACCATCTC  49
       ||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACTTTTCCACTCCACATCCCACAGCAGCCCTGCTTACCATCTC  50

seq1  ACACCTCATTCACTATACAGATATACCCTTGGGAAGCTCTGGG-AAAAGT  98
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  ACACCTCATTCACTATACAGATATACCCTTGAGAAGCTCTGGGAAAAAGT  100

seq1  CAGACATGCTGCCAAAAAAATAAAGGTATAGACCTGTAACTCAGGCTACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGCTGCCAAAAAAATAAAGGTATAGACCTGTAACTCAGGCTACT  150

seq1  GAGGAGGTTGAGGCAG-AAAGATTACAGACTCAAGGTGTTGCTCTCTCTG  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGGAGGTTGAGGCAGAAAAGATTACAGACTCAAGGTGTTGCTCTCTCTG  200

seq1  AACTCCAGACCCCTGACCATGGCTACCATAATATCTCTGATTATCTACGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGACCCCTGACCATGGCTACCATAATATCTCTGATTATCTACGG  250

seq1  GAGACACTCACAAGATTGGGCTAACAAGCACTCTATCATAAAGGGGAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTCACAAGATTGGGCTAACAAGCACTCTATCATAAAGGGGAGAA  300

seq1  AGGTCTAGGAAGCAGTGGACGATCTGCAATACATGCCCTCCCCCAGAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAGGAAGCAGTGGACGATCTGCAATACATGCCCTCCCCCAGAAAG  350

seq1  ATAAACAAGCAACTCACAGTTGCTCGAGAAGGAGGACCCTTCTCAGGCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGCAACTCACAGTTGCTCGAGAAGGAGGACCCTTCTCAGGCAG  400

seq1  CATCAGGATCAGTAAGTTGTCCCCACTCTGTGTAACCCTTCAGCCATGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATCAGTAAGTTGTCCCCACTCTGTGTAACCCTTCAGCCATGAT  450

seq1  CCTGTGAGTCACCCCAACTCATCGGTCCACCAAGCTCCACTTGCGTGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGTCACCCCAACTCATCGGTCCACCAAGCTCCACTTGCGTGAAG  500

seq1  CCATTTCTTCAGTCTGTCATTGGTGCCTTACCTGGGGTAAACAGACCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTCAGTCTGTCATTGGTGCCTTACCTGGGGTAAACAGACCTCT  550

seq1  GCTCACAATTCCCCAAGAAAGATTAATGCAATACAAGGCCAGTCTGGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAATTCCCCAAGAAAGATTAATGCAATACAAGGCCAGTCTGGGCA  600

seq1  ACTTAATGAAATACTGTGTCACATTTTTAAAAGTAAAAAGAACAGAGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGAAATACTGTGTCACATTTTTAAAAGTAAAAAGAACAGAGTTG  650

seq1  GAGATGCAGCATCTTGATTAAGAGCACTGGCTGCTCTTCTAAAGGACCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGCATCTTGATTAAGAGCACTGGCTGCTCTTCTAAAGGACCTG  700

seq1  AATTC  702
      |||||
seq2  AATTC  705