BAC Information

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BAC

Clone NameB6Ng01-141E24
Chromosome11 (Build37)
Map Location 85,649,968 - 85,782,698
singlet/doubletdoublet
Overlap geneTbx2, Tbx4, LOC668751
Upstream geneGgnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
Downstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E24.bB6Ng01-141E24.g
ACCDH939802DH939803
length1,045839
definitionDH939802|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E24, 5' end.DH939803|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,781,647 - 85,782,698)(85,649,968 - 85,650,804)
sequence
gaattcacagagattctcctgcctctgcttcccaagtactgggattaacg
gcatggacaatcacagctggctagcatacaacattttcgtgacaataaat
aaagggagaactgaattcagcaaaaaagaaaaaagaaaaaaagaaagaaa
aaggaaacaagaaatcataataaatttaaaaaacaggtggtaccagtgag
tctaaatataccaattattccaataaacatacatagtttaagttttttca
cttggagagtagaacacctaattgaggtttcaaaaaaacttttgtcatgt
gctgtttacaaaagacattcatatgtaaaaaatttaagtgaaaaaataga
tcccatgaaaatattaaaaatataaattagataaaagccttaataaaata
tcagtttcattctaaaatgttttgttaaaagcaacaaaaaaaatgttttt
ttcaatttgataaaagacacagatcaccaaaggaaataaagctttgggaa
acaagaatgtggctttcaaaagttcagccttcactaagtggattcaagta
gttgacaaatttataattagagtatggtgggttattttaaatttttacct
tttaaatcacacactcacacaaagatacaggatctctgtgggttcaaagc
cagcatgttctacatagcaagttccaggtcaaccagaactatagagtgag
atcctaactagcaaaagatgggcagagggagggagaaagaaagaaattga
atcaacgatgaatgcattccaaacagaagccaacatttctaaacaagtcc
atgggcgagttctagacattactgtgtgagtgaggtttgcactgctttaa
caaatgtctgcaatcaacccactgaaggtttctgttggcccgcagctttg
acagtttcattccatggttggtcggttagtttctatgcctgtggagttat
ggtagtgcatgctggaggagggcatgccaagaaagaccggactgggtctt
gttgctcctttaaagaccctcctaatgacacctcagcccactttt
gaattctccttcaagtgaaatggtctcgtagatcaccatagattaaatga
gagggtcccagtgtctttggttgtgtctttgtaaaccaggggtctgcctg
gccaggtacattgtatggagtgtattagctctatgtggaagcaagtgaat
tcgttgaattctatacaagcttgtttgtttatttttaattttttgcgaac
ttgcccttctgggcctgtgagtggtgcaatgacttgactttgcctagacc
tgcggacttgggtgtgcgggcactgggtttgtctgtgttcagtgaggaat
agtttaacctttgtgactatgtgagcctttatgcttgctccggcctgtat
gtgcgtgttgagggattatttcttgaataaggcttttggagatgcaaaga
tcccgtcattttcctagatgcttgcctgccggcctcacctctctgcgtac
taccccaggcgggtggcacgacccaacccccaaccccggctctctactgt
gtagcttgtagccgctgacctcggggtgcccccggccagccttgaagaat
caggtcttgacttagtaccgcttcctcggccccgcagattacacagctga
agatcgacaacaaccccttttgccaagggcttccgggacactgggaacgg
ccgtcgggagaaaaggtgagacaggagccgatggcctgttgtgcttaccc
ctggtcgcaggaagcagggaggatgcaatggtggctgaccgctctctctg
ctcacccacaggaagcagcttacgctgcccactctccgtttgtatgagga
gcactgtaagccggagcgtgatggcgctgaattccgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85781647_85782698
seq2: B6Ng01-141E24.b_46_1090 (reverse)

seq1  AAAAGTAGGGCTGAGTGGTCATTAGAGGTGTACTCTAAAAGGAGGCAACA  50
      |||||| ||||||||  ||||||||  | || || | |||||| ||||||
seq2  AAAAGT-GGGCTGAGGTGTCATTAGGAGGGT-CT-TTAAAGGA-GCAACA  46

seq1  GAACCCAGTCCCGTCCTTCCTCTGGCATGCCCTCCCTCCAGCATGCACTA  100
        ||||||||| ||| |||   ||||||||||| ||||||||||||||||
seq2  AGACCCAGTCCGGTCTTTC--TTGGCATGCCCT-CCTCCAGCATGCACTA  93

seq1  CCATAACTCCACAGGCATAGAAACTAACCGACCAACCATGGAATGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTCCACAGGCATAGAAACTAACCGACCAACCATGGAATGAAACT  143

seq1  GTCAAAGCTGCGGGCCAACAGAAACCTTCAGTGGGTTGATTGCAGACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCTGCGGGCCAACAGAAACCTTCAGTGGGTTGATTGCAGACATT  193

seq1  TGTTAAAGCAGTGCAAACCTCACTCACACAGTAATGTCTAGAACTCGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGCAGTGCAAACCTCACTCACACAGTAATGTCTAGAACTCGCCC  243

seq1  ATGGACTTGTTTAGAAATGTTGGCTTCTGTTTGGAATGCATTCATCGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTGTTTAGAAATGTTGGCTTCTGTTTGGAATGCATTCATCGTTG  293

seq1  ATTCAATTTCTTTCTTTCTCCCTCCCTCTGCCCATCTTTTGCTAGTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTCTTTCTTTCTCCCTCCCTCTGCCCATCTTTTGCTAGTTAGG  343

seq1  ATCTCACTCTATAGTTCTGGTTGACCTGGAACTTGCTATGTAGAACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTCTATAGTTCTGGTTGACCTGGAACTTGCTATGTAGAACATGC  393

seq1  TGGCTTTGAACCCACAGAGATCCTGTATCTTTGTGTGAGTGTGTGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGAACCCACAGAGATCCTGTATCTTTGTGTGAGTGTGTGATTTA  443

seq1  AAAGGTAAAAATTTAAAATAACCCACCATACTCTAATTATAAATTTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAAAATTTAAAATAACCCACCATACTCTAATTATAAATTTGTCA  493

seq1  ACTACTTGAATCCACTTAGTGAAGGCTGAACTTTTGAAAGCCACATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGAATCCACTTAGTGAAGGCTGAACTTTTGAAAGCCACATTCTT  543

seq1  GTTTCCCAAAGCTTTATTTCCTTTGGTGATCTGTGTCTTTTATCAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCAAAGCTTTATTTCCTTTGGTGATCTGTGTCTTTTATCAAATTG  593

seq1  AAAAAAACATTTTTTTTGTTGCTTTTAACAAAACATTTTAGAATGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACATTTTTTTTGTTGCTTTTAACAAAACATTTTAGAATGAAACT  643

seq1  GATATTTTATTAAGGCTTTTATCTAATTTATATTTTTAATATTTTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTATTAAGGCTTTTATCTAATTTATATTTTTAATATTTTCATGG  693

seq1  GATCTATTTTTTCACTTAAATTTTTTACATATGAATGTCTTTTGTAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATTTTTTCACTTAAATTTTTTACATATGAATGTCTTTTGTAAACA  743

seq1  GCACATGACAAAAGTTTTTTTGAAACCTCAATTAGGTGTTCTACTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGACAAAAGTTTTTTTGAAACCTCAATTAGGTGTTCTACTCTCCA  793

seq1  AGTGAAAAAACTTAAACTATGTATGTTTATTGGAATAATTGGTATATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAACTTAAACTATGTATGTTTATTGGAATAATTGGTATATTTA  843

seq1  GACTCACTGGTACCACCTGTTTTTTAAATTTATTATGATTTCTTGTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACTGGTACCACCTGTTTTTTAAATTTATTATGATTTCTTGTTTCC  893

seq1  TTTTTCTTTCTTTTTTTCTTTTTTCTTTTTTGCTGAATTCAGTTCTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTTTTTTTCTTTTTTCTTTTTTGCTGAATTCAGTTCTCCCT  943

seq1  TTATTTATTGTCACGAAAATGTTGTATGCTAGCCAGCTGTGATTGTCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTGTCACGAAAATGTTGTATGCTAGCCAGCTGTGATTGTCCAT  993

seq1  GCCGTTAATCCCAGTACTTGGGAAGCAGAGGCAGGAGAATCTCTGTGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTAATCCCAGTACTTGGGAAGCAGAGGCAGGAGAATCTCTGTGAAT  1043

seq1  TC  1052
      ||
seq2  TC  1045

seq1: chr11_85649968_85650804
seq2: B6Ng01-141E24.g_71_909

seq1  GAATTCTCCTTCAAGTGAAATGGTCTCGTAGATCACCATAGATTAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCAAGTGAAATGGTCTCGTAGATCACCATAGATTAAATGA  50

seq1  GAGGGTCCCAGTGTCTTTGGTTGTGTCTTTGTAAACCAGGGGTCTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCCAGTGTCTTTGGTTGTGTCTTTGTAAACCAGGGGTCTGCCTG  100

seq1  GCCAGGTACATTGTATGGAGTGTATTAGCTCTATGTGGAAGCAAGTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTACATTGTATGGAGTGTATTAGCTCTATGTGGAAGCAAGTGAAT  150

seq1  TCGTTGAATTCTATACAAGCTTGTTTGTTTATTTTTAATTTTTTGCGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGAATTCTATACAAGCTTGTTTGTTTATTTTTAATTTTTTGCGAAC  200

seq1  TTGCCCTTCTGGGCCTGTGAGTGGTGCAATGACTTGACTTTGCCTAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTTCTGGGCCTGTGAGTGGTGCAATGACTTGACTTTGCCTAGACC  250

seq1  TGCGGACTTGGGTGTGCGGGCACTGGGTTTGTCTGTGTTCAGTGAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGACTTGGGTGTGCGGGCACTGGGTTTGTCTGTGTTCAGTGAGGAAT  300

seq1  AGTTTAACCTTTGTGACTATGTGAGCCTTTATGCTTGCTCCGGCCTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACCTTTGTGACTATGTGAGCCTTTATGCTTGCTCCGGCCTGTAT  350

seq1  GTGCGTGTTGAGGGATTATTTCTTGAATAAGGCTTTTGGAGATGCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTTGAGGGATTATTTCTTGAATAAGGCTTTTGGAGATGCAAAGA  400

seq1  TCCCGTCATTTTCCTAGATGCTTGCCTGCCGGCCTCACCTCTCTGCGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTCATTTTCCTAGATGCTTGCCTGCCGGCCTCACCTCTCTGCGTAC  450

seq1  TACCCCAGGCGGGTGGCACGACCCAACCCCCAACCCCGGCTCTCTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGGCGGGTGGCACGACCCAACCCCCAACCCCGGCTCTCTACTGT  500

seq1  GTAGCTTGTAGCCGCTGACCTCGGGGTGCCCCCGGCCAGCCTTGAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGTAGCCGCTGACCTCGGGGTGCCCCCGGCCAGCCTTGAAGAAT  550

seq1  CAGGTCTTGACTTAGTACCGCTTCCTCGGCCCCGCAGATTACACAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTGACTTAGTACCGCTTCCTCGGCCCCGCAGATTACACAGCTGA  600

seq1  AGATCGACAACAACCCC-TTTGCCAAGGGCTTCCGGGACACTGGGAACGG  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATCGACAACAACCCCTTTTGCCAAGGGCTTCCGGGACACTGGGAACGG  650

seq1  CCGTCGGGAGAAAAGGTGAGACAGGAGCCGATGGCCTGTTGTGCGTACCC  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCGTCGGGAGAAAAGGTGAGACAGGAGCCGATGGCCTGTTGTGCTTACCC  700

seq1  CTGGTCGCAGGAAGCAGGGAGGATGCAATGGTGGCTGACCGCTCCCTCTG  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGTCGCAGGAAGCAGGGAGGATGCAATGGTGGCTGACCGCTCTCTCTG  750

seq1  CTCACCCACAGGAAGCAGCTAACGCTGCCCACTCTCCGTTTGTATGAGGA  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCACCCACAGGAAGCAGCTTACGCTGCCCACTCTCCGTTTGTATGAGGA  800

seq1  GCACTGTAAGCCGGAGCGTGATGGCGCTGAA-TCCGATG  837
      ||||||||||||||||||||||||||||||| |||||||
seq2  GCACTGTAAGCCGGAGCGTGATGGCGCTGAATTCCGATG  839