BAC Information

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BAC

Clone NameB6Ng01-141G21
Chromosome11 (Build37)
Map Location 113,503,405 - 113,670,069
singlet/doubletdoublet
Overlap geneCog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2
Upstream geneLOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik, Slc39a11, Sstr2
Downstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141G21.bB6Ng01-141G21.g
ACCDH939891DH939892
length256957
definitionDH939891|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G21, 5' end.DH939892|Mus musculus domesticus DNA, BAC clone: B6Ng01-141G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,503,405 - 113,503,660)(113,669,124 - 113,670,069)
sequence
aggaagacaaaagacagtgcagttctctgctccttgtagtgggagacatt
tgattcgaagtgtgcaagctgacctgtgaggtagttccggtgacggcgct
gttgccaagtctgacaacctgagtgttgtcccagcaccccacaaggtgga
agaagagaagagactcctgcaagttgtcctctgacttccatttgcacaga
atggcacacataataccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
gaattcccagggagtaagcagtgtagtgtctgtctaacaacaggggttag
agtcaccccagaaaataggctttttgctcctgatcccctggtaaggtcat
aggggaaagggcagatgctggaaccaaggcagatctgagatctgagagaa
ttcaggatctctctctctctctctctctctctcttcccccgtgtgtcaac
cctcaaagccatgaatttcatatctgcagtttcaaccaaccaagaaagga
aaatattccccaaaattgcgtctgtctgggtgcagcagcacagaccttaa
gaggtgaagccaggaatgggcaagagccagggctcagagatggctcagca
ttgctgttcttccaagagactgagttccattcccagaacctacattaagt
gtctcacaaccacctcgagcctcaattccaggggacccaaccccctttgt
gctggcctccatgggcatgggcgctggtgtgacacacacacagagacaca
catgcacataaatgaaaagaaaagtaagcctttaaagtcgatcagagcca
cctttagctacacagcaagttcgagactgccctgagctaagggagaatgc
ctcaaaaggcaaataagcaagtgaaaaatgtatctatgctgaagacagac
agcaccaaataacaaatgtgtctttactgagcatgtacaaacagcaccga
gtagcaactactttataaatagatacagtactattggcattgtgtcagga
atggaaagtaacctagaaatgagttaatgtatatggggaagttctagatg
atatctcagatgttcctcatttgcctagcccgagagaagatggccctggg
ttaattcccaagccacagataaggaagagtgggtactagaaggagtctgg
agctctttgcaaaacaaatggcattttaatgaaacagcatccccccgagt
ttttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113503405_113503660
seq2: B6Ng01-141G21.b_51_306

seq1  AGGAAGACAAAAGACAGTGCAGTTCTCTGCTCCTTGTAGTGGGAGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAAAGACAGTGCAGTTCTCTGCTCCTTGTAGTGGGAGACATT  50

seq1  TGATTCGAAGTGTGCAAGCTGACCTGTGAGGTAGTTCCGGTGACGGCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCGAAGTGTGCAAGCTGACCTGTGAGGTAGTTCCGGTGACGGCGCT  100

seq1  GTTGCCAAGTCTGACAACCTGAGTGTTGTCCCAGCACCCCACAAGGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAAGTCTGACAACCTGAGTGTTGTCCCAGCACCCCACAAGGTGGA  150

seq1  AGAAGAGAAGAGACTCCTGCAAGTTGTCCTCTGACTTCCATTTGCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAGAGACTCCTGCAAGTTGTCCTCTGACTTCCATTTGCACAGA  200

seq1  ATGGCACACATAATACCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACACATAATACCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTG  256
      ||||||
seq2  TGTGTG  256

seq1: chr11_113669124_113670069
seq2: B6Ng01-141G21.g_66_1007 (reverse)

seq1  GGATGCTTGTTTCATATAAAATGCCATTTTGTTTGGCAAAGAGCTACAGA  50
      |||||| |||||||| |||||||||| ||||||| |||||||||| ||||
seq2  GGATGC-TGTTTCAT-TAAAATGCCA-TTTGTTTTGCAAAGAGCTCCAGA  47

seq1  CATCCTTCTATGTACCCACTCCTCCCTTATCTGTGGCGTTGGGAATTAAA  100
      | |||||||| ||||||||| || ||||||||||||| ||||||||| ||
seq2  C-TCCTTCTA-GTACCCACT-CTTCCTTATCTGTGGC-TTGGGAATT-AA  92

seq1  CCCAGGG-CATC-TCTCTCAGGCTAGGCAAGTGAGGTACCACTGAGATAT  148
      ||||||| |||| |||||| |||||||||| ||||| ||  |||||||||
seq2  CCCAGGGCCATCTTCTCTCGGGCTAGGCAAATGAGGAACATCTGAGATAT  142

seq1  CATCTAGAACTT-CCCATATACATTAACTCATTTCTAGGTTACTTTCCAT  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTAGAACTTCCCCATATACATTAACTCATTTCTAGGTTACTTTCCAT  192

seq1  TCCTGACACATTGCAAATAGTACTGTATCTATTTACTAAGTAGTTGCTAC  247
      |||||||||| ||| ||||||||||||||||||||  |||||||||||||
seq2  TCCTGACACAATGCCAATAGTACTGTATCTATTTATAAAGTAGTTGCTAC  242

seq1  TCGGTGCTGTTTGTACATGCTCAGTAAAGACACATTTGTTATTTGGTGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGCTGTTTGTACATGCTCAGTAAAGACACATTTGTTATTTGGTGCT  292

seq1  GTCTGTCTTCAGCATAGATACA-TTTTCACTTGCTTATTTGCCTTTTGAG  346
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTCTGTCTTCAGCATAGATACATTTTTCACTTGCTTATTTGCCTTTTGAG  342

seq1  GCATTCTCCCTTAGCTCAGGGCAGTCTCGAACTTGCTGTGTAGCTAAAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCCCTTAGCTCAGGGCAGTCTCGAACTTGCTGTGTAGCTAAAGG  392

seq1  TGGCTCTGATCGACTTTAAAGGCTTACTTTTCTTTTCATTTATGTGCATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGATCGACTTTAAAGGCTTACTTTTCTTTTCATTTATGTGCATG  442

seq1  TGTGTCTCTGTGTGTGTGTCACACCAGCGCCCATGCCCATGGAGGCCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTGTGTGTGTGTCACACCAGCGCCCATGCCCATGGAGGCCAGC  492

seq1  ACAAAGGGGGTTGGGTCCCCTGGAATTGAGGCTCGAGGTGGTTGTGAGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGGGTTGGGTCCCCTGGAATTGAGGCTCGAGGTGGTTGTGAGAC  542

seq1  ACTTAATGTAGGTTCTGGGAATGGAACTCAGTCTCTTGGAAGAACAGCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTAGGTTCTGGGAATGGAACTCAGTCTCTTGGAAGAACAGCAA  592

seq1  TGCTGAGCCATCTCTGAGCCCTGGCTCTTGCCCATTCCTGGCTTCACCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCATCTCTGAGCCCTGGCTCTTGCCCATTCCTGGCTTCACCTC  642

seq1  TTAAGGTCTGTGCTGCTGCACCCAGACAGACGCAATTTTGGGGAATATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCTGTGCTGCTGCACCCAGACAGACGCAATTTTGGGGAATATTT  692

seq1  TCCTTTCTTGGTTGGTTGAAACTGCAGATATGAAATTCATGGCTTTGAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTGGTTGGTTGAAACTGCAGATATGAAATTCATGGCTTTGAGG  742

seq1  GTTGACACACGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGATCCTGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACACACGGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGATCCTGAA  792

seq1  TTCTCTCAGATCTCAGATCTGCCTTGGTTCCAGCATCTGCCCTTTCCCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAGATCTCAGATCTGCCTTGGTTCCAGCATCTGCCCTTTCCCCT  842

seq1  ATGACCTTACCAGGGGATCAGGAGCAAAAAGCCTATTTTCTGGGGTGACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTACCAGGGGATCAGGAGCAAAAAGCCTATTTTCTGGGGTGACT  892

seq1  CTAACCCCTGTTGTTAGACAGACACTACACTGCTTACTCCCTGGGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCTGTTGTTAGACAGACACTACACTGCTTACTCCCTGGGAATTC  942