BAC Information

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BAC

Clone NameB6Ng01-141M19
Chromosome11 (Build37)
Map Location 117,137,981 - 117,282,721
singlet/doubletdoublet
Overlap geneSept9, EG667423
Upstream geneGalr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141M19.bB6Ng01-141M19.g
ACCDH940160DH940161
length1,015963
definitionDH940160|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M19, 5' end.DH940161|Mus musculus domesticus DNA, BAC clone: B6Ng01-141M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,281,697 - 117,282,721)(117,137,981 - 117,138,961)
sequence
gaattctagacaagtcaccagggcaggatgaaaccttttaccgtctcatt
agactgtggcccaatggttcccatcctttaatggacctttaacacagtcc
ctcatgttctgctgaccccaaccataaaattatctttgttgctatttcat
agctgtaattttgttactgttatgaatcacaattttttttggagatagag
gtttgtcaaagaggtgactacctatagattaagaactgctactctctctc
tctttctcttgggcccgtggcgccggcaagatgggcaagtgtcgtggtct
ccaaactgcccggaagctccgcagtcaccgacgggaccagaagtggcatg
acaaacaatacaagaaagcccacttgggcacagccctgaaggccaatcca
tttggggtgcctctcatgcaaagggaattgtgctgaaaaagtaggggttg
aggccaaacagccaaactctgccgtcaggaagtgtgtcagggtgcagctc
attaagaatggcaagaagatcacagcgttcgtgcccaatgatggctgcct
gaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgga
aaggggtcatgctgtaggtgatattcctggagtctgctttaaggcggtta
aagtagccaatgtttctctgttggctctatacaaaggcaagaaagaaagg
ccaagatcataaaatttgacaatggaaacacagtaataaattttcatatt
ctgaaaaaaaaaaaaaaaagaactgctgctctagagcaagaatttggagg
ctgaggacatagttcagtggcagagatttgcctgggcattcaccaagtcc
tggggtccagcctcgcatcatgaagacaattaacttagctgtctgtttgt
tcctggtgggatttgttttgttgtcttttggtcttgtttcattttgtttg
tttgagaccgtgctcatgccttgaactccagtgatcctcctgcctcatct
cctaatgctggctta
gaattcaagaaaaaggactcaggaatgtgggcagtcttggtcaccctgct
acctggagaagcagaaggcagtgccactgttggagtgagatctgttatgc
atgctgtcacagcagcatggaaggatgtttgtcaagattctgacagaagt
tatctgtcttgtgggattatatttctttctttctttttttttcacatttt
ctgcctcgtgcttagatggtgttaatagtcaggaaaaaggccgtaactgt
tatttttaaagttaattttcaaaaggaaaagtagctttactcaaacttct
ctttccatttggagatcgagggctcagaggtctgagaagggagtccagtc
ccaagtagcgaagccagggtgccagagacgggcctgaccgtgccaggccc
gaccctgccaggtctgatcctgccaggtgagggttaagtgcagcacggtg
tgcttcacctttgtccagcagtgagggctgctgggagtcacctctgcagg
catagtttgcaccacaaggaatgtggtcagagttaacgtcttccattttg
gactgagagagtgtgcagggctgaccctccctttccatccctgctgagcc
tgtgttgaactccacagttgctggaccaggttagttcaggagcaagaagc
cgcctgagctggttgtagatatttgtgttctgctaggaaatggaagggcc
tttcctttgcaggaactaggccagaggggccacgtgcctggatcagggtg
gaatgtagatggttttggtcattcttgatcatatctttattacacacaca
cacacaccaccacagaccacacttctcaacacccaaacatataccataac
ccgagagacacagacagatagacacagacttgatctcccacccccatacc
agagaacaagacctgcccttgtatgtcaccactcttctctaccatacgag
actacagacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117281697_117282721
seq2: B6Ng01-141M19.b_46_1060 (reverse)

seq1  TAAGCCCAGCACTAGGGAGACTGAGGCAGGAGGATCACTGTGAGTTCAAG  50
      |||| |||||| || ||||| ||||||||||||||||||| |||||||||
seq2  TAAG-CCAGCATTA-GGAGA-TGAGGCAGGAGGATCACTG-GAGTTCAAG  46

seq1  GCATGAGGCACGGTCTCAAACAAACAAAAAATGAAAACAAGACCAAAAGA  100
      |||||| ||||||||||||||||||  |||||| ||||||||||||||||
seq2  GCATGA-GCACGGTCTCAAACAAAC--AAAATG-AAACAAGACCAAAAGA  92

seq1  CAACAAAAACAAAATCCCACCAGGAACAAACAGACAGCTAAGTTAATTGT  150
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAA--CAAATCCCACCAGGAACAAACAGACAGCTAAGTTAATTGT  140

seq1  CTTCATGATGCCGAGGCTGGACCCCAGGACTTGGTGAATGCCCAGGCAAA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGATG-CGAGGCTGGACCCCAGGACTTGGTGAATGCCCAGGCAAA  189

seq1  TCTCTGCCACTGAACTATGTCCTCAGCCTCCAAATTCTTGCTCTAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCACTGAACTATGTCCTCAGCCTCCAAATTCTTGCTCTAGAGCA  239

seq1  GCAGTTC-TTTTTTTTTTTTTTTCAGAATATGAAAATTTATTACTGTGTT  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTTTTTTTTTTTTTTTTCAGAATATGAAAATTTATTACTGTGTT  289

seq1  TCCATTGTCAAATTTTATGATCTTGGCCTTTCTTTCTTGCCTTTGTATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCAAATTTTATGATCTTGGCCTTTCTTTCTTGCCTTTGTATAG  339

seq1  AGCCAACAGAGAAACATTGGCTACTTTAACCGCCTTAAAGCAGACTCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACAGAGAAACATTGGCTACTTTAACCGCCTTAAAGCAGACTCCAG  389

seq1  GAATATCACCTACAGCATGACCCCTTTCCGACCAAATCCAGCAACCAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCACCTACAGCATGACCCCTTTCCGACCAAATCCAGCAACCAGAA  439

seq1  CTTCATCATTTTCCTCAATGAAGTTCAGGCAGCCATCATTGGGCACGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCATTTTCCTCAATGAAGTTCAGGCAGCCATCATTGGGCACGAAC  489

seq1  GCTGTGATCTTCTTGCCATTCTTAATGAGCTGCACCCTGACACACTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATCTTCTTGCCATTCTTAATGAGCTGCACCCTGACACACTTCCT  539

seq1  GACGGCAGAGTTTGGCTGTTTGGCCTCAACCCCTACTTTTTCAGCACAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCAGAGTTTGGCTGTTTGGCCTCAACCCCTACTTTTTCAGCACAAT  589

seq1  TCCCTTTGCATGAGAGGCACCCCAAATGGATTGGCCTTCAGGGCTGTGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGCATGAGAGGCACCCCAAATGGATTGGCCTTCAGGGCTGTGCC  639

seq1  CAAGTGGGCTTTCTTGTATTGTTTGTCATGCCACTTCTGGTCCCGTCGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGCTTTCTTGTATTGTTTGTCATGCCACTTCTGGTCCCGTCGGT  689

seq1  GACTGCGGAGCTTCCGGGCAGTTTGGAGACCACGACACTTGCCCATCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGGAGCTTCCGGGCAGTTTGGAGACCACGACACTTGCCCATCTTG  739

seq1  CCGGCGCCACGGGCCCAAGAGAAAGAGAGAGAGAGTAGCAGTTCTTAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGCCACGGGCCCAAGAGAAAGAGAGAGAGAGTAGCAGTTCTTAATC  789

seq1  TATAGGTAGTCACCTCTTTGACAAACCTCTATCTCCAAAAAAAATTGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTAGTCACCTCTTTGACAAACCTCTATCTCCAAAAAAAATTGTGA  839

seq1  TTCATAACAGTAACAAAATTACAGCTATGAAATAGCAACAAAGATAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACAGTAACAAAATTACAGCTATGAAATAGCAACAAAGATAATTT  889

seq1  TATGGTTGGGGTCAGCAGAACATGAGGGACTGTGTTAAAGGTCCATTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTGGGGTCAGCAGAACATGAGGGACTGTGTTAAAGGTCCATTAAA  939

seq1  GGATGGGAACCATTGGGCCACAGTCTAATGAGACGGTAAAAGGTTTCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAACCATTGGGCCACAGTCTAATGAGACGGTAAAAGGTTTCATC  989

seq1  CTGCCCTGGTGACTTGTCTAGAATTC  1025
      ||||||||||||||||||||||||||
seq2  CTGCCCTGGTGACTTGTCTAGAATTC  1015

seq1: chr11_117137981_117138961
seq2: B6Ng01-141M19.g_70_1032

seq1  GAATTCAAGAAAAAGGACTCAGGAATGTGGGCAGTCTTGGTCACCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAAAGGACTCAGGAATGTGGGCAGTCTTGGTCACCCTGCT  50

seq1  ACCTGGAGAAGCAGAAGGCAGTGCCACTGTTGGAGTGAGATCTGTTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGAAGCAGAAGGCAGTGCCACTGTTGGAGTGAGATCTGTTATGC  100

seq1  ATGCTGTCACAGCAGCATGGAAGGATGTTTGTCAAGATTCTGACAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCACAGCAGCATGGAAGGATGTTTGTCAAGATTCTGACAGAAGT  150

seq1  TATCTGTCTTGTGGGATTATATTTCTTTCTTTCTTTTTTTTTCACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCTTGTGGGATTATATTTCTTTCTTTCTTTTTTTTTCACATTTT  200

seq1  CTGCCTCGTGCTTAGATGGTGTTAATAGTCAGGAAAAAGGCCGTAACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCGTGCTTAGATGGTGTTAATAGTCAGGAAAAAGGCCGTAACTGT  250

seq1  TATTTTTAAAGTTAATTTTCAAAAGGAAAAGTAGCTTTACTCAAACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAAGTTAATTTTCAAAAGGAAAAGTAGCTTTACTCAAACTTCT  300

seq1  CTTTCCATTTGGAGATCGAGGGCTCAGAGGTCTGAGAAGGGAGTCCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTTGGAGATCGAGGGCTCAGAGGTCTGAGAAGGGAGTCCAGTC  350

seq1  CCAAGTAGCGAAGCCAGGGTGCCAGAGACGGGCCTGACCGTGCCAGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGCGAAGCCAGGGTGCCAGAGACGGGCCTGACCGTGCCAGGCCC  400

seq1  GACCCTGCCAGGTCTGATCCTGCCAGGTGAGGGTTAAGTGCAGCACGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGCCAGGTCTGATCCTGCCAGGTGAGGGTTAAGTGCAGCACGGTG  450

seq1  TGCTTCACCTTTGTCCAGCAGTGAGGGCTGCTGGGAGTCACCTCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACCTTTGTCCAGCAGTGAGGGCTGCTGGGAGTCACCTCTGCAGG  500

seq1  CATAGTTTGCACCACAAGGAATGTGGTCAGAGTTAACGTCTTCCATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTGCACCACAAGGAATGTGGTCAGAGTTAACGTCTTCCATTTTG  550

seq1  GACTGAGAGAGTGTGCAGGGCTGACCCTCCCTTTCCATCCCTGCTGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAGAGTGTGCAGGGCTGACCCTCCCTTTCCATCCCTGCTGAGCC  600

seq1  TGTGTTGAACTCCACAGTTGCTGGACCAGGTTAGTTCAGGAGCAAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAACTCCACAGTTGCTGGACCAGGTTAGTTCAGGAGCAAGAAGC  650

seq1  CGCCTGAGCTGGTTGTAGATATTTGTGTTCTGCTAGGAAATGGAAGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGAGCTGGTTGTAGATATTTGTGTTCTGCTAGGAAATGGAAGGGCC  700

seq1  TTTCCTTTGCAGGAACTAGGCCAGAGGGGCCACGTGCCTGGACCAGGGTG  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTCCTTTGCAGGAACTAGGCCAGAGGGGCCACGTGCCTGGATCAGGGTG  750

seq1  GAATGTAGATGGTTTTGGTCATTTCTTGATCATATCTTTATTACACACAC  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAATGTAGATGGTTTTGGTCA-TTCTTGATCATATCTTTATTACACACAC  799

seq1  ACACACACACACCACAGACCACACATTCACAACACACCAAACATATACCA  850
      |||||||| ||||||||||||||| ||| |||||| ||||||||||||||
seq2  ACACACAC-CACCACAGACCACAC-TTCTCAACAC-CCAAACATATACCA  846

seq1  TAAACACAGAGAGACACAGACAGATAGACACAGACATAGATACACACACA  900
      |||   | ||||||||||||||||||||||||||| | ||| | | ||| 
seq2  TAA--CCCGAGAGACACAGACAGATAGACACAGAC-TTGAT-CTCCCAC-  891

seq1  CCACATACACAGAGAAACAAGAACATGCCACTTGTATGTCACACACACAT  950
      || ||||| ||||| |||||| || |||| |||||||||||| ||| | |
seq2  CCCCATAC-CAGAG-AACAAG-ACCTGCC-CTTGTATGTCAC-CACTC-T  935

seq1  ACACATACCATACAGAGACACACAGACAGAC  981
       | | |||||||| |||||  ||||||||||
seq2  TCTC-TACCATAC-GAGAC-TACAGACAGAC  963