BAC Information

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BAC

Clone NameB6Ng01-142L06
Chromosome2 (Build37)11 (Build37)
Map Location 149,161,806 - 149,161,84612,744,080 - 12,745,202
singlet/doubletsingletsinglet
Overlap geneLOC100043593
Upstream geneSstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754
Downstream geneLOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142L06.bB6Ng01-142L06.g
ACCDH940831DH940832
length7171,127
definitionDH940831|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L06, 5' end.DH940832|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,161,806 - 149,161,846)(12,744,080 - 12,745,202)
sequence
gaattcagtaaggaagttacctattcagtaactaattaagcattacaaag
gaccaagctggaatagctcaggctattctgcagagtgtttatttgaggca
gtaaccagtcttacccaaacacaatggcctagcgaataggtgggtttacc
atgagaaaagttagggaatcccactgagagtgttttcttcactaggccca
aagaaatcaggcagaactgtagagtttaaataagttttatgcctcagtcc
agcttttttttaaatattaataacagggaagaaattgtaacctcccccaa
gcctgaagaccttgacttggctgccactaaggagattacctagggtggag
cctgcctttctagatcactctattgttcagccactgtcactgtttctctt
caagatagtgctacctgctgggaggctgctgaactattcctgacactaca
ccctatcctgcatgtggtcacatgcagctgggctccaaggatgagtttgc
aggaatgggcttcccctctcctttataagcgcattcaccattaaacattt
gatccttgatcaggaagtttgtcttggctccatttctctcttgtctgcct
agttcccctctcttttcatctccgggttgcctcccaggtgaaatcccgtt
tcttgtgagctgcaggtcggtttccaacatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtc
gtggtctctgatgggctttgcactcccaggcatctctctctctcccaaca
ctgtcctctccatgagcagaagattttcatctgttctgcctggagctgtt
ctgaaaaggatgcaggtgtctgtcaggcacaatgcccagtactcagctga
caaaatgcatgtgataccccatatgacataaagagataatagagaaagac
agtgagaccccagttctgttggggagaaaaatcctttggtttggtctcca
gtatttcttggtactttgaacctaaaatgcaagggttgactggagctggt
gtccatttagaggaaacaagccactgtagggtgtggcagctttgcagtgc
cactagccgctttaattttggtaatagcttttaattataacttacttttc
tatcttggaattgggcatcatgcttaaataccatttttttcaagacaggg
aactctttaactttcatatatttaaatatccaatatgagtcttcttgact
aagtcccttagtttttttgacttgtcgttgaattagtcttatattcccag
aaactttggaagaaagaaaaagagtgccaggagtagaaagctgtgctaag
cattctaggggaattcactgtggtgatcacttgccaatctagaaaaattg
attctggcaacatttgctcgtaggaaagggatttattattatctcttttt
ccttgtttcttagtcacattctttaactacataagtgacttttcactcag
caatagttgacaatgtgggtttataagaactagttatttccccactgaca
gatttcaggccatacatgagctcctgtatttttgcttaatgtgtcttata
tacttagtgctagttttttcagttgtaagagaaggaaggcgtgctgtcat
aaaagattcatttttgtagattgtaaaagctttggagagcatagtactaa
attggtttccttttcctctgtgtatgtctctgagcagttgcagcagcctg
cctcaaagcaggtatacatggtgccacactattgtgtgagctttcagccc
ttgtgggccacattcttgatttttatggattaacaaagctggattagagc
ctgtaacagtgccttcctccctcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_149161806_149161846
seq2: B6Ng01-142L06.b_723_763 (reverse)

seq1  GACACACACACACACACACACACACACACACACACACATGT  41
      |||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACACACACACACACACACACACACACACACATGT  41

seq1: chr11_12744080_12745202
seq2: B6Ng01-142L06.g_80_1206

seq1  GTGGTCTCTGATGGGCTTTGCACTCCCAGGCATCTCTCTCTCTCCCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTGATGGGCTTTGCACTCCCAGGCATCTCTCTCTCTCCCAACA  50

seq1  CTGTCCTCTCCATGAGCAGAAGATTTTCATCTGTTCTGCCTGGAGCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTCCATGAGCAGAAGATTTTCATCTGTTCTGCCTGGAGCTGTT  100

seq1  CTGAAAAGGATGCAGGTGTCTGTCAGGCACAATGCCCAGTACTCAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGGATGCAGGTGTCTGTCAGGCACAATGCCCAGTACTCAGCTGA  150

seq1  CAAAATGCATGTGATACCCCATATGACATAAAGAGATAATAGAGAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCATGTGATACCCCATATGACATAAAGAGATAATAGAGAAAGAC  200

seq1  AGTGAGACCCCAGTTCTGTTGGGGAGAAAAATCCTTTGGTTTGGTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACCCCAGTTCTGTTGGGGAGAAAAATCCTTTGGTTTGGTCTCCA  250

seq1  GTATTTCTTGGTACTTTGAACCTAAAATGCAAGGGTTGACTGGAGCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTGGTACTTTGAACCTAAAATGCAAGGGTTGACTGGAGCTGGT  300

seq1  GTCCATTTAGAGGAAACAAGCCACTGTAGGGTGTGGCAGCTTTGCAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTAGAGGAAACAAGCCACTGTAGGGTGTGGCAGCTTTGCAGTGC  350

seq1  CACTAGCCGCTTTAATTTTGGTAATAGCTTTTAATTATAACTTACTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCCGCTTTAATTTTGGTAATAGCTTTTAATTATAACTTACTTTTC  400

seq1  TATCTTGGAATTGGGCATCATGCTTAAATACCATTTTTTTCAAGACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGAATTGGGCATCATGCTTAAATACCATTTTTTTCAAGACAGGG  450

seq1  AACTCTTTAACTTTCATATATTTAAATATCCAATATGAGTCTTCTTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTAACTTTCATATATTTAAATATCCAATATGAGTCTTCTTGACT  500

seq1  AAGTCCCTTAGTTTTTTTGACTTGTCGTTGAATTAGTCTTATATTCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTTAGTTTTTTTGACTTGTCGTTGAATTAGTCTTATATTCCCAG  550

seq1  AAACTTTGGAAGAAAGAAAAAGAGTGCCAGGAGTAGAAAGCTGTGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGGAAGAAAGAAAAAGAGTGCCAGGAGTAGAAAGCTGTGCTAAG  600

seq1  CATTCTAGGGGAATTCACTGTGGTGATCACTTGCCAATCTAGAAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGGGGAATTCACTGTGGTGATCACTTGCCAATCTAGAAAAATTG  650

seq1  ATTCTGGCAACA-TTGCTCGTAGGAAAGGGATTTATTATTATCTCTTTTT  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCAACATTTGCTCGTAGGAAAGGGATTTATTATTATCTCTTTTT  700

seq1  CCTTGTTTCTTAGTCACATTC-TTAACTACATAAGTGACTTTTCACTCAG  748
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTTGTTTCTTAGTCACATTCTTTAACTACATAAGTGACTTTTCACTCAG  750

seq1  CAATAGTTGACAATGTGGGTTTTATAAGAACTAGTTATTTCCCCACTGAC  798
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATAGTTGACAATGTGGG-TTTATAAGAACTAGTTATTTCCCCACTGAC  799

seq1  AGATTTCAGGCCATACATGAGCTCCTGTATTTTTGCTTAAATGTGTCTTA  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGATTTCAGGCCATACATGAGCTCCTGTATTTTTGCTT-AATGTGTCTTA  848

seq1  TATACTTAGTGCTAGTATTTTCAGTTGTAAGAGAAGG-AGGCGTGCTGTC  897
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TATACTTAGTGCTAGTTTTTTCAGTTGTAAGAGAAGGAAGGCGTGCTGTC  898

seq1  AATAAAGATTCA-TTTTGTAGATTGTAAAAGCTTT-GAGAGCATTAGGTA  945
      |  ||||||||| |||||||||||||||||||||| ||||||||   |||
seq2  ATAAAAGATTCATTTTTGTAGATTGTAAAAGCTTTGGAGAGCAT--AGTA  946

seq1  CTAAATTGG-TTCCTTTT-CTCTGTGTATGTCTCTGAGCAGTTGCAGCAG  993
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  CTAAATTGGTTTCCTTTTCCTCTGTGTATGTCTCTGAGCAGTTGCAGCAG  996

seq1  CCTGGCTCAAAGGCAGGTATACATGGTG-CACACTATTGTGTTGAGGCTT  1042
      |||| |||||| |||||||||||||||| |||||||||||| ||||  ||
seq2  CCTGCCTCAAA-GCAGGTATACATGGTGCCACACTATTGTG-TGAGCTTT  1044

seq1  CAGCTC-TGTGGG-CACATTCTTGA-TTTTATGGAATTACAAAGCTGGAA  1089
      |||| | |||||| ||||||||||| ||||||||| | ||||||||||| 
seq2  CAGCCCTTGTGGGCCACATTCTTGATTTTTATGGATTAACAAAGCTGGAT  1094

seq1  TAGAGCCTGTAGACAGTGGCTTTCATCCTCCTTA  1123
      ||||||||||| |||||| ||| |  ||||||||
seq2  TAGAGCCTGTA-ACAGTGCCTTCCTCCCTCCTTA  1127