BAC Information

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BAC

Clone NameB6Ng01-143B04
Chromosome11 (Build37)
Map Location 94,767,836 - 94,932,229
singlet/doubletdoublet
Overlap geneCol1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3
Upstream geneMbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739
Downstream geneDlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B04.bB6Ng01-143B04.g
ACCDH941108DH941109
length9631,039
definitionDH941108|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B04, 5' end.DH941109|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,767,836 - 94,768,799)(94,931,169 - 94,932,229)
sequence
gaattccctggaaatgaagtgacaaatgattgcaagctaccatttaagtg
cttggatttgaacctggatcctctgtgtcttagttagggttttactgctg
tgaacagacaccatgaccaaggcagttcttataaaacaacatttaattga
ggctggcttacaggttcagaggttcagtccattagcatcaaggaacatgg
cagcatccaggcaggcaccgtacaggaagagctgagagttctataccttc
atctgaaggctaccagcagaatactgactgccaggcagctagaatgaggg
tcttaaagcccacattcacagtgccatgcccactccaacaaggctgcacc
tactcaaacagggccacaccttctaatagtgccacttgttggaccaagca
tacacaaatcatcacactctgtaagaccagcatggctcttaaccactgag
ccatctctcctgcccctgttcatggcctttgtctaggcactcagaaggca
ctcaagggaccctaccagtaaaacaagaaacaaaataaaacaaagaaaca
aaaaccaaaaccaaacaaaattatacacaaatgtgttcacagggtaatta
ttcataaaagtcaaaatgcagaaacatcaaatgaatagagaagtgtagta
tatccagacaaagatatcattcgtcataaaaattaaatactatagatttt
atgaaacataaatacatgcaaatgaactccacaaacacgctacagtatta
tgtccaatctgaaagccatggggtacatgcagccaaggatagctctaagt
aagccagcaatgccggggcaggggaggggtgtgcatacctttaatcccag
catttaggagacagaagccggaagactcttgagttggaggccagcttggt
ccacagagcagttccaagacagccagggctacacagagtaaccctggttg
ggggggggggggg
gaattcctgggtccctggagagtctggagtcaacctcaggccagggctgg
taccacagaaatctggagcagcagtgttgatgtgcccacgggtgccttct
tagtcagagagtccctttgcagaaacccatttgtttccctccaaatcctg
gaatagagagttcacttggcattcctgttttatagataagacactcaaga
ctcacaaggaaaggaaatcactctggaagcagggccctagctcaggctga
ggtgttcctttcccacaggccttttcttctctccttcggcaagcatgcca
gggggtgggtgtgccagggtagtcaggcaggtaccctccctagcctgaac
agaaattggctaatggcctgcctgttttatctcttcccttacccctccct
agggtgctcagaacactactctgtttggggaagctttgtccctgccctta
ggaacagcagccgctgagggtgatgtctgagctgcctatatgagatacag
gtcaacccacttcctagtacctccaggcaatgcattcctgactcctcgta
ggtggaggcaccccaagccccagcatgcctgggccctgccctgcctactc
cctgtaggcctcactctcaggtccaaagcagagctgtaggtacagccatt
gctcagcagttccatactggccagaggcctggagcctgggagcctcgggg
ccacagtgttgctgggacaaacttgggaagtgctgctatccagaaagctg
agttggcaggaaggtggcagagggcatgttctaagaagaatattgatagg
gagagatagaaggaaaaacttgggtctgaagctgggctgactgccccaga
tactattcatatagcctgtggtagttagaaattttcctttataaataccc
agggatgtctgaatagatttcagaccgatccctgtctgccgctaagtcac
cctttggtgtgggatggactctaggtctagccccttgtggatttctgtgt
cctaagtagattctgagacaaggtgacagatagctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94767836_94768799
seq2: B6Ng01-143B04.b_44_1005

seq1  GAATTCCCTGGAAATGAAGTGACAAATGATTGCAAGCTACCATTTAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGAAATGAAGTGACAAATGATTGCAAGCTACCATTTAAGTG  50

seq1  CTTGGATTTGAACCTGGATCCTCTGTGTCTTAGTTAGGGTTTTACTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTTGAACCTGGATCCTCTGTGTCTTAGTTAGGGTTTTACTGCTG  100

seq1  TGAACAGACACCATGACCAAGGCAGTTCTTATAAAACAACATTTAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGACACCATGACCAAGGCAGTTCTTATAAAACAACATTTAATTGA  150

seq1  GGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTAGCATCAAGGAACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTAGCATCAAGGAACATGG  200

seq1  CAGCATCCAGGCAGGCACCGTACAGGAAGAGCTGAGAGTTCTATACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAGGCAGGCACCGTACAGGAAGAGCTGAGAGTTCTATACCTTC  250

seq1  ATCTGAAGGCTACCAGCAGAATACTGACTGCCAGGCAGCTAGAATGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGGCTACCAGCAGAATACTGACTGCCAGGCAGCTAGAATGAGGG  300

seq1  TCTTAAAGCCCACATTCACAGTGCCATGCCCACTCCAACAAGGCTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGCCCACATTCACAGTGCCATGCCCACTCCAACAAGGCTGCACC  350

seq1  TACTCAAACAGGGCCACACCTTCTAATAGTGCCACTTGTTGGACCAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAACAGGGCCACACCTTCTAATAGTGCCACTTGTTGGACCAAGCA  400

seq1  TACACAAATCATCACACTCTGTAAGACCAGCATGGCTCTTAACCACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATCATCACACTCTGTAAGACCAGCATGGCTCTTAACCACTGAG  450

seq1  CCATCTCTCCTGCCCCTGTTCATGGCCTTTGTCTAGGCACTCAGAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCTGCCCCTGTTCATGGCCTTTGTCTAGGCACTCAGAAGGCA  500

seq1  CTCAAGGGACCCTACCAGTAAAACAAGAAACAAAATAAAACAAAGAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGACCCTACCAGTAAAACAAGAAACAAAATAAAACAAAGAAACA  550

seq1  AAAACCAAAACCAAACAAAATTATACACAAATGTGTTCACAGGGTAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACCAAACAAAATTATACACAAATGTGTTCACAGGGTAATTA  600

seq1  TTCATAAAAGTCAAAATGCAGAAACATCAAATGAATAGAGAAGTGTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAGTCAAAATGCAGAAACATCAAATGAATAGAGAAGTGTAGTA  650

seq1  TATCCAGACAAAGATATCATTCGTCATAAAAATTAAATACTATAGATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGACAAAGATATCATTCGTCATAAAAATTAAATACTATAGATTTT  700

seq1  ATGAAACATAAATACATGCAAATGAACTCCACAAACACGCTACAGTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACATAAATACATGCAAATGAACTCCACAAACACGCTACAGTATTA  750

seq1  TGTCCAATCTGAAAGCCAT-GGGTACATGCAGCCAAGGATAGCTCTAAGT  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTCCAATCTGAAAGCCATGGGGTACATGCAGCCAAGGATAGCTCTAAGT  800

seq1  AAGCCAGCAATGCCGGGGCAGGGGAGGGGTGTTGCATACCTTTAATCCCA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGCCAGCAATGCCGGGGCAGGGGAGGGGTG-TGCATACCTTTAATCCCA  849

seq1  GCATTTAGGAGACAGAAGCCGGAAGATCTCTTGAGTTGGAGGCCAGCTTG  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCATTTAGGAGACAGAAGCCGGAAGA-CTCTTGAGTTGGAGGCCAGCTTG  898

seq1  GTCCACAGAGCAAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGT  949
      ||||||||||| ||||||||||||||||||||||||||||| ||||||| 
seq2  GTCCACAGAGC-AGTTCCAAGACAGCCAGGGCTACACAGAGTAACCCTGG  947

seq1  TTGGGGGGGGGGGGG  964
      |||||||||||||||
seq2  TTGGGGGGGGGGGGG  962

seq1: chr11_94931169_94932229
seq2: B6Ng01-143B04.g_69_1107 (reverse)

seq1  CAAGAGCTATCTGTCACCTTGTCCTCAGAATCTACCTTTAGGGACACCAA  50
      |||||||||||||||||||||| ||||||||||||  ||| ||||||  |
seq2  CAAGAGCTATCTGTCACCTTGT-CTCAGAATCTAC--TTA-GGACAC--A  44

seq1  GAAATTCCCACAAGGGGGCTAGGACCCTAGAGTCCCATCCCACACCAAAA  100
      |||||  |||||| ||||||||   |||||||| |||||||||||| |||
seq2  GAAAT--CCACAA-GGGGCTAG--ACCTAGAGT-CCATCCCACACC-AAA  87

seq1  GGGTGACTTAGGCCGGGCAGACAGGGGATCGGTCCTGAAATCCTATCTCA  150
      |||||||||||    |||||||| ||||||||| ||||||| |||| |||
seq2  GGGTGACTTAG---CGGCAGACA-GGGATCGGT-CTGAAAT-CTAT-TCA  130

seq1  GACAATCCCTGGGTATTTATAAAGGAAAATTTCTAACTACCACAGGCTAT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAC-ATCCCTGGGTATTTATAAAGGAAAATTTCTAACTACCACAGGCTAT  179

seq1  ATGAATAGTATCTGGGGCAGTCAGCCCAGCTTCAGACCCAAGTTTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGTATCTGGGGCAGTCAGCCCAGCTTCAGACCCAAGTTTTTCCT  229

seq1  TCTATCTTCTCCCTATCAATATTCTTCTTAGAACATGCCCTCTGCCACCT  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATC-TCTCCCTATCAATATTCTTCTTAGAACATGCCCTCTGCCACCT  278

seq1  TCCTGCCAACTCAGCTTTCTGGATAGCAGCACTTCCCAAGTTTGTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAACTCAGCTTTCTGGATAGCAGCACTTCCCAAGTTTGTCCCAG  328

seq1  CAACACTGTGGCCCCGAGGCTCCCAGGCTCCAGGCCTCTGGCCAGTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTGGCCCCGAGGCTCCCAGGCTCCAGGCCTCTGGCCAGTATGG  378

seq1  AACTGCTGAGCAATGGCTGTACCTACAGCTCTGCTTTGGACCTGAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAGCAATGGCTGTACCTACAGCTCTGCTTTGGACCTGAGAGTG  428

seq1  AGGCCTACAGGGAGTAGGCAGGGCAGGGCCCAGGCATGCTGGGGCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTACAGGGAGTAGGCAGGGCAGGGCCCAGGCATGCTGGGGCTTGGG  478

seq1  GTGCCTCCACCTACGAGGAGTCAGGAATGCATTGCCTGGAGGTACTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCACCTACGAGGAGTCAGGAATGCATTGCCTGGAGGTACTAGGA  528

seq1  AGTGGGTTGACCTGTATCTCATATAGGCAGCTCAGACATCACCCTCAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTGACCTGTATCTCATATAGGCAGCTCAGACATCACCCTCAGCG  578

seq1  GCTGCTGTTCCTAAGGGCAGGGACAAAGCTTCCCCAAACAGAGTAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTCCTAAGGGCAGGGACAAAGCTTCCCCAAACAGAGTAGTGTT  628

seq1  CTGAGCACCCTAGGGAGGGGTAAGGGAAGAGATAAAACAGGCAGGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACCCTAGGGAGGGGTAAGGGAAGAGATAAAACAGGCAGGCCATT  678

seq1  AGCCAATTTCTGTTCAGGCTAGGGAGGGTACCTGCCTGACTACCCTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTTCTGTTCAGGCTAGGGAGGGTACCTGCCTGACTACCCTGGCA  728

seq1  CACCCACCCCCTGGCATGCTTGCCGAAGGAGAGAAGAAAAGGCCTGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCCCTGGCATGCTTGCCGAAGGAGAGAAGAAAAGGCCTGTGGG  778

seq1  AAAGGAACACCTCAGCCTGAGCTAGGGCCCTGCTTCCAGAGTGATTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACACCTCAGCCTGAGCTAGGGCCCTGCTTCCAGAGTGATTTCCT  828

seq1  TTCCTTGTGAGTCTTGAGTGTCTTATCTATAAAACAGGAATGCCAAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGAGTCTTGAGTGTCTTATCTATAAAACAGGAATGCCAAGTGA  878

seq1  ACTCTCTATTCCAGGATTTGGAGGGAAACAAATGGGTTTCTGCAAAGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTATTCCAGGATTTGGAGGGAAACAAATGGGTTTCTGCAAAGGGA  928

seq1  CTCTCTGACTAAGAAGGCACCCGTGGGCACATCAACACTGCTGCTCCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGACTAAGAAGGCACCCGTGGGCACATCAACACTGCTGCTCCAGA  978

seq1  TTTCTGTGGTACCAGCCCTGGCCTGAGGTTGACTCCAGACTCTCCAGGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGTACCAGCCCTGGCCTGAGGTTGACTCCAGACTCTCCAGGGA  1028

seq1  CCCAGGAATTC  1061
      |||||||||||
seq2  CCCAGGAATTC  1039