BAC Information

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BAC

Clone NameB6Ng01-143H21
Chromosome11 (Build37)
Map Location 53,980,319 - 54,147,022
singlet/doubletdoublet
Overlap geneDbi-ps, Csf2, Il3, Acsl6
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647
Downstream gene4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143H21.bB6Ng01-143H21.g
ACCDH941413DH941414
length1,142887
definitionDH941413|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H21, 5' end.DH941414|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,145,849 - 54,147,022)(53,980,319 - 53,981,222)
sequence
gaattcagtaacgaggataaaaataaattctttctcataattatatcccc
tgaggcctgtttgctcatcttgcaggtgatccatttggcatcagtcacag
cctcgtcttctaattcaagtgacagaggtgtccctctgcttaagatttgt
gatggatgagatctcagcctgtgaattggtgatttctccggtaatgtcaa
ctagaggtggctcagggggacatagaaggatgtgcttcttaaaaagtgac
tattttttcccctaataggtagttgtcaaaatgtcttcctttggaaaaga
gaaagactcataggatctgcctcacctgtgcttggctttttatcccagcg
ctccttcaggcccgaacccatgttctctctcctagttgaccctcaagata
tgaatcctaggaagccctggagtccttaaggtattctgagaatcacctgg
caattttcaccttcaggttctggaagtttctaaggatccagataccagat
acagaagaggaatgatacaaagtagatccttgtgccacagagttggtctg
gctaacgtgcggataaacaacatcaacttggggcaagaaggcctgaggat
caggagagaaagttgtctttacagatgaagattctccacaaccttcttaa
atgaggcaggagactaaccctgttggcagttcttcagttctgttcttctc
cagcataatggcagagttcagacctttccgaatcacacgttttcttccag
attccaatatcactttataaacgactataggattcttcaatattcccaga
aatattcagattatctgcataacttatctttatgtgtgattccaaaggct
gaaggagaaatggatgctcattgcagattctgggagctgacaacaagtct
ccttagaagtgtgagtgagtctccagagttctacatgctgctcaatccgg
gatgagcacatctcaagcagtctttcaaactgaatgtagaaagtctctga
tgctcacatgagaacgaagtcattcttgtgttttctgaatgatgtggatg
cagaacaagtgagatttcttagtgtccttgtgctgtacagaacgggaacc
tggccaccagtcaattttagtgacagaattgccccactcgga
gaattcttcaggttctttatagtttgtttatatgctgtctttggaaagta
tcttttttggtctatatttggggatgagtagccacagtctgtacccaaag
tatttgtgcttccatcatagcgatggctggtggaaaatgagaaatatatg
gttctgccctgaaggaatgtagtctgttttaaggaaaattaaaatgcaca
ccggtcacttttaatatacgagtggttataccaagctcggtggcaacaca
ggaaaagtccctattggaaaagaagagagggttctcaggagaagagttgc
attatttcaggcaagttttagtctgatgccaagctgcttgcaaatctaca
gtaagaaggtacgcgctgtacttttaaagactataaaatgcagcagctac
actgtgctatgtcggtggagcatacatttggaacaaaagataatgtttga
ggttttatttatgtgaaattttaatgtataactcagtgaatttttgatcc
atggtctcgctatgtagcacaggctggcctcaaacatgtgaccccagtgt
ctcagcattccaagtgctgggtttgtaggtatgtaccccaatgcccagtt
tagcattcatggtttcaatataagctgcctcataggtggtaggcagctgg
gaagcccatggtgtagaagttgggtttgggtgggcggtgcttctcatttc
aggatcttataaaattaggtttgtatttaacaatgaagagatggagaggt
ttcctcttaacagcccagctacgagagcaggtttagtccaccagccagcc
ctggacattctgagaacatttggagaggaaggctttctctaagcctgtgg
ggttgaattgtgctgctggtcctggtctgtgaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54145849_54147022
seq2: B6Ng01-143H21.b_47_1188 (reverse)

seq1  TCCGAGTGGGGGCCAATCTTGTATCACTAAAATTTTGACTTGGGTGGCAG  50
      |||||||||||  |||  || | |||||||||  ||||||  ||||||  
seq2  TCCGAGTGGGG--CAA--TTCTGTCACTAAAA--TTGACT--GGTGGCCA  42

seq1  TGTCTCACTGTCTGTACCAGGCACAAAGACAACTAGAGGAAGATCTGCAC  100
       || || |  |||||||   |||||| ||| |||| ||  | |||| |||
seq2  GGT-TCCCGTTCTGTAC--AGCACAAGGAC-ACTA-AG--AAATCT-CAC  84

seq1  TTTGGTTCTGCAAACCACATCATTCAGAAAACAC-AGGATGACTCTGTTC  149
      ||  ||||||| | |||||||||||||||||||| || ||||||  ||||
seq2  TT--GTTCTGC-ATCCACATCATTCAGAAAACACAAGAATGACTTCGTTC  131

seq1  TCAATGTGAGCAATCAGAGACTTTCTACATCCAGTTTGAAAAGACTGCTT  199
      || |||||||| |||||||||||||||||| ||||||| ||||||||| |
seq2  TC-ATGTGAGC-ATCAGAGACTTTCTACATTCAGTTTG-AAAGACTGC-T  177

seq1  TGAGATGGTGGCTCATCCCGGATTGGAGCAGCATGTAGAACCTCCTGGAA  249
      |||||||   |||||||||||||| ||||||||||||||||   |||| |
seq2  TGAGATG--TGCTCATCCCGGATT-GAGCAGCATGTAGAAC--TCTGG-A  221

seq1  GACTCACCTCACACTTCCTAAGGAGACCTTTGTTGTCAGCTCCCAGAATC  299
      |||||| ||||||||| ||||||||||  |||||||||||||||||||||
seq2  GACTCA-CTCACACTT-CTAAGGAGAC--TTGTTGTCAGCTCCCAGAATC  267

seq1  TGCAATGAGCATCCATTTCTCCTTCAGCCTTTGGAATCACACATAAAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAGCATCCATTTCTCCTTCAGCCTTTGGAATCACACATAAAGAT  317

seq1  AAGTTATGCAGATAATCTGAATATTTCTGGGAATATTGAAGAATCCTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGCAGATAATCTGAATATTTCTGGGAATATTGAAGAATCCTATA  367

seq1  GTCGTTTATAAAGTGATATTGGAATCTGGAAGAAAACGTGTGATTCGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTTATAAAGTGATATTGGAATCTGGAAGAAAACGTGTGATTCGGAA  417

seq1  AGGTCTGAACTCTGCCATTATGCTGGAGAAGAACAGAACTGAAGAACTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAACTCTGCCATTATGCTGGAGAAGAACAGAACTGAAGAACTGC  467

seq1  CAACAGGGTTAGTCTCCTGCCTCATTTAAGAAGGTTGTGGAGAATCTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGTTAGTCTCCTGCCTCATTTAAGAAGGTTGTGGAGAATCTTCA  517

seq1  TCTGTAAAGACAACTTTCTCTCCTGATCCTCAGGCCTTCTTGCCCCAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAGACAACTTTCTCTCCTGATCCTCAGGCCTTCTTGCCCCAAGT  567

seq1  TGATGTTGTTTATCCGCACGTTAGCCAGACCAACTCTGTGGCACAAGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGTTTATCCGCACGTTAGCCAGACCAACTCTGTGGCACAAGGAT  617

seq1  CTACTTTGTATCATTCCTCTTCTGTATCTGGTATCTGGATCCTTAGAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGTATCATTCCTCTTCTGTATCTGGTATCTGGATCCTTAGAAAC  667

seq1  TTCCAGAACCTGAAGGTGAAAATTGCCAGGTGATTCTCAGAATACCTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAACCTGAAGGTGAAAATTGCCAGGTGATTCTCAGAATACCTTAA  717

seq1  GGACTCCAGGGCTTCCTAGGATTCATATCTTGAGGGTCAACTAGGAGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGGGCTTCCTAGGATTCATATCTTGAGGGTCAACTAGGAGAGA  767

seq1  GAACATGGGTTCGGGCCTGAAGGAGCGCTGGGATAAAAAGCCAAGCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGGTTCGGGCCTGAAGGAGCGCTGGGATAAAAAGCCAAGCACAG  817

seq1  GTGAGGCAGATCCTATGAGTCTTTCTCTTTTCCAAAGGAAGACATTTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGATCCTATGAGTCTTTCTCTTTTCCAAAGGAAGACATTTTGA  867

seq1  CAACTACCTATTAGGGGAAAAAATAGTCACTTTTTAAGAAGCACATCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACCTATTAGGGGAAAAAATAGTCACTTTTTAAGAAGCACATCCTT  917

seq1  CTATGTCCCCCTGAGCCACCTCTAGTTGACATTACCGGAGAAATCACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCCCCTGAGCCACCTCTAGTTGACATTACCGGAGAAATCACCAA  967

seq1  TTCACAGGCTGAGATCTCATCCATCACAAATCTTAAGCAGAGGGACACCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGCTGAGATCTCATCCATCACAAATCTTAAGCAGAGGGACACCT  1017

seq1  CTGTCACTTGAATTAGAAGACGAGGCTGTGACTGATGCCAAATGGATCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTTGAATTAGAAGACGAGGCTGTGACTGATGCCAAATGGATCAC  1067

seq1  CTGCAAGATGAGCAAACAGGCCTCAGGGGATATAATTATGAGAAAGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGATGAGCAAACAGGCCTCAGGGGATATAATTATGAGAAAGAATT  1117

seq1  TATTTTTATCCTCGTTACTGAATTC  1174
      |||||||||||||||||||||||||
seq2  TATTTTTATCCTCGTTACTGAATTC  1142

seq1: chr11_53980319_53981222
seq2: B6Ng01-143H21.g_72_958

seq1  GAATTCTTCAGGTTCTTTATAGTTTGTTTATATGCTGTCTTTGGAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGTTCTTTATAGTTTGTTTATATGCTGTCTTTGGAAAGTA  50

seq1  TCTTTTTTGGTCTATATTTGGGGATGAGTAGCCACAGTCTGTACCCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGGTCTATATTTGGGGATGAGTAGCCACAGTCTGTACCCAAAG  100

seq1  TATTTGTGCTTCCATCATAGCGATGGCTGGTGGAAAATGAGAAATATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGCTTCCATCATAGCGATGGCTGGTGGAAAATGAGAAATATATG  150

seq1  GTTCTGCCCTGAAGGAATGTAGTCTGTTTTAAGGAAAATTAAAATGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCCTGAAGGAATGTAGTCTGTTTTAAGGAAAATTAAAATGCACA  200

seq1  CCGGTCACTTTTAATATACGAGTGGTTATACCAAGCTCGGTGGCAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCACTTTTAATATACGAGTGGTTATACCAAGCTCGGTGGCAACACA  250

seq1  GGAAAAGTCCCTATTGGAAAAGAAGAGAGGGTTCTCAGGAGAAGAGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTCCCTATTGGAAAAGAAGAGAGGGTTCTCAGGAGAAGAGTTGC  300

seq1  ATTATTTCAGGCAAGTTTTAGTCTGATGCCAAGCTGCTTGCAAATCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCAGGCAAGTTTTAGTCTGATGCCAAGCTGCTTGCAAATCTACA  350

seq1  GTAAGAAGGTACGCGCTGTACTTTTAAAGACTATAAAATGCAGCAGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGTACGCGCTGTACTTTTAAAGACTATAAAATGCAGCAGCTAC  400

seq1  ACTGTGCTATGTCGGTGGAGCATACATTTGGAACAAAAGATAATGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTATGTCGGTGGAGCATACATTTGGAACAAAAGATAATGTTTGA  450

seq1  GGTTTTATTTATGTGAAATTTTAATGTATAACTCAGTGAATTTTTGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTATGTGAAATTTTAATGTATAACTCAGTGAATTTTTGATCC  500

seq1  ATGGTCTCGCTATGTAGCACAGGCTGGCCTCAAACATGTGACCCCAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCGCTATGTAGCACAGGCTGGCCTCAAACATGTGACCCCAGTGT  550

seq1  CTCAGCATTCCAAGTGCTGGGTTTGTAGGTATGTACCCCAATGCCCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTCCAAGTGCTGGGTTTGTAGGTATGTACCCCAATGCCCAGTT  600

seq1  TAGCATTCATGGTTTCAATATAAGCTGCCTCATAGGTGGTAGGCAGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCATGGTTTCAATATAAGCTGCCTCATAGGTGGTAGGCAGCTGG  650

seq1  GAAGCCCATGGTGTAGAAGTTGGGTTTGGGTGGGCGGTGCTTCTCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCATGGTGTAGAAGTTGGGTTTGGGTGGGCGGTGCTTCTCATTTC  700

seq1  AGGATCTTATAAAATTAGGTTTGTATTTAACAATGAAGAGATGGAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTATAAAATTAGGTTTGTATTTAACAATGAAGAGATGGAGAGGT  750

seq1  TTCCTCTTAACAGCCCCAGCTACGAGAGCAGGTTTAGTCCACCAGCCAGC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTAACAG-CCCAGCTACGAGAGCAGGTTTAGTCCACCAGCCAGC  799

seq1  CCTGGACATTCTGAGAACATTTGGAGAGGAAGGCTTTCTCTAAGCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACATTCTGAGAACATTTGGAGAGGAAGGCTTTCTCTAAGCCTGTG  849

seq1  GGGTTGAATTGTTGCTGCT-GTTCTGGTCTAGTGTGGAGGGTAGATGTGA  899
      ||||||||||| ||||||| || ||||||| ||| |||||          
seq2  GGGTTGAATTG-TGCTGCTGGTCCTGGTCT-GTGAGGAGG----------  887

seq1  GGAGG  904
           
seq2  -----  887