BAC Information

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BAC

Clone NameB6Ng01-143M01
Chromosome11 (Build37)
Map Location 60,484,058 - 60,618,748
singlet/doubletdoublet
Overlap geneLOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1
Upstream geneAA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403
Downstream geneLOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143M01.bB6Ng01-143M01.g
ACCDH941607DH941608
length1,0611,081
definitionDH941607|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M01, 5' end.DH941608|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,484,058 - 60,485,141)(60,617,649 - 60,618,748)
sequence
gaattccttggccttggctccaagctccgcttcccgctctttgcgagact
tgaatctacccacaaacactttacggtcattgagaagcaagccattcatc
ttctcgatggccttgtcggcggcctcttgggtctcaaagtgaacaaaagc
gtagcccttagagccgttctcatcacagaccaccttacaggacaagatgt
ttccaaaggcagagaaagtgtcatacagtgccttgttgtctatggatttg
tccaggttcttgatgaagacatttcccaccccagactttctcaaagaggg
atcgctctgccaccacatgatgcggataggcttttcatttatcacgtcga
agttcatggtgtccaaggccctctcagcgtcagctggctgctggaagttg
acgtaggcataacccagcgagcgcccagtgatcatatcgcgacagaccca
gatggacagcacaggcccgacagggctgaacttttcatacagcatggctt
cggtgacgtccgagtgcaaatcgcccacatataaggaggccatggggtag
ctgctggctgcagcgttcatctccccaccccccaggaccccgagcgctgc
caggaggacttctaacaaggctacacctgggaagactggagcaaggaggc
ttcgagcctggacccgagtgtggcacgacttgcacgcgactgcaaaagac
ccaaaacaaaaggccctcgaaaacaatatggcccgctcctggagtttgta
ccagctgtcctggcttgaggcttaaaaataaaaattaaagtagtaaatcc
cctcctaaagggggcaaaaaattgtcaagagacaatcagatgctgcgctc
actgccgccttgggaatttgcgtttcgcgataaatacagcccagggctcc
cagaggtttacagttacagcagcctggaaagggaaatcaagtctttgtgg
tgctgcaaggcagcgcggacgtgtgctgacagcactgagctggctgctat
gcggcgcgagcttgcagggcgggcggcgaggggatggctcacccttgaga
catacagatgc
gaattccagaacaaccaagacacatactgaaaccctgtctcagcaaacaa
ataaaaacaatgaaaactagttgtgatattaatttgctgtgttttgctat
ctgaggatggctttggacctctgatcatcctgtcttcactcctaggtgtt
gaaattatagacttgtactagcaggtcctgtttgttttatatatgtgagt
acactgtagctgtcttcagacacaacagaagagggcatcggatcccatta
cagatggttgtgagtcaccatgtggttgctgggagctgaattcaggacct
ctggaggagtagtcagtgctcctaactgcttctctctagcctctgttgat
tttgttttaaatttatttatttttgttgttgctgtttttctttctttttt
tttactgtatgtaattatttatttttaaaaatcaagtcaaataaattatt
atttcagggatttgattcctttgctgtccatccaggtcacctgaaagaga
agacaaagaaagattttgaggagttaagtgatccagggaaatgtatgtta
tcttctcagaaaaacacagcactatcaaaacagtgcaggattttctctgt
gaagaacatcaatctttggtcacagcgttgttgctgtttttcttaaactc
gtattgccagaggtgaccgaggcttctgatcctcctacttccacagtaat
gagtgctaagattgcaggatgtgccaccctgcccaatttatccagtgctg
gggatgaaacccagggcattatgaatgttagagcttactctatggactga
gcttccctccaaccccacgtctgctttcttctgataaggtttacagcatc
attaaaaaggagagcacccggcagagggtcggattagagctgattgcctc
ggagatttgccagccgagctgtgttgaggcctggatctgcttaatacaat
actctgaggatatcaggccaaaggtgagtgggcattctaaagtctgtcta
cccttttgttttatttgtggaacatgcttgccatggggttcagctgactt
cacctcttaaatggaatccctcttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60484058_60485141
seq2: B6Ng01-143M01.b_46_1106

seq1  GAATTCCTTGGCCTTGGCTCCAAGCTCCGCTTCCCGCTCTTTGCGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCCTTGGCTCCAAGCTCCGCTTCCCGCTCTTTGCGAGACT  50

seq1  TGAATCTACCCACAAACACTTTACGGTCATTGAGAAGCAAGCCATTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTACCCACAAACACTTTACGGTCATTGAGAAGCAAGCCATTCATC  100

seq1  TTCTCGATGGCCTTGTCGGCGGCCTCTTGGGTCTCAAAGTGAACAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGATGGCCTTGTCGGCGGCCTCTTGGGTCTCAAAGTGAACAAAAGC  150

seq1  GTAGCCCTTAGAGCCGTTCTCATCACAGACCACCTTACAGGACAAGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTTAGAGCCGTTCTCATCACAGACCACCTTACAGGACAAGATGT  200

seq1  TTCCAAAGGCAGAGAAAGTGTCATACAGTGCCTTGTTGTCTATGGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGCAGAGAAAGTGTCATACAGTGCCTTGTTGTCTATGGATTTG  250

seq1  TCCAGGTTCTTGATGAAGACATTTCCCACCCCAGACTTTCTCAAAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTCTTGATGAAGACATTTCCCACCCCAGACTTTCTCAAAGAGGG  300

seq1  ATCGCTCTGCCACCACATGATGCGGATAGGCTTTTCATTTATCACGTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTCTGCCACCACATGATGCGGATAGGCTTTTCATTTATCACGTCGA  350

seq1  AGTTCATGGTGTCCAAGGCCCTCTCAGCGTCAGCTGGCTGCTGGAAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGGTGTCCAAGGCCCTCTCAGCGTCAGCTGGCTGCTGGAAGTTG  400

seq1  ACGTAGGCATAACCCAGCGAGCGCCCAGTGATCATATCGCGACAGACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGCATAACCCAGCGAGCGCCCAGTGATCATATCGCGACAGACCCA  450

seq1  GATGGACAGCACAGGCCCGACAGGGCTGAACTTTTCATACAGCATGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACAGCACAGGCCCGACAGGGCTGAACTTTTCATACAGCATGGCTT  500

seq1  CGGTGACGTCCGAGTGCAAATCGCCCACATATAAGGAGGCCATGGGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACGTCCGAGTGCAAATCGCCCACATATAAGGAGGCCATGGGGTAG  550

seq1  CTGCTGGCTGCAGCGTTCATCTCCCCACCCCCCAGGACCCCGAGCGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTGCAGCGTTCATCTCCCCACCCCCCAGGACCCCGAGCGCTGC  600

seq1  CAGGAGGACTTCTAACAAGGCTACACCTGGGAAGACTGGAGCAAGGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACTTCTAACAAGGCTACACCTGGGAAGACTGGAGCAAGGAGGC  650

seq1  TTCGAGCCTGGACCCGAGTGTGGCACGACTTGCACGCGACTGCAAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGCCTGGACCCGAGTGTGGCACGACTTGCACGCGACTGCAAAAGAC  700

seq1  CCAAAACAAAAGGCCCTCGAAAACAATATGGCCCGCTCCTGGAGTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAAAAGGCCCTCGAAAACAATATGGCCCGCTCCTGGAGTTTGTA  750

seq1  CCAGCTGTCCTGGCTTGAGGCTTAAAAAATAAAAATTAAAGTAGTAAATC  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAGCTGTCCTGGCTTGAGGCTT-AAAAATAAAAATTAAAGTAGTAAATC  799

seq1  CCCTCCTAAAGGGGGCAAAAAATTGTCAAGAGACAATCAGATGCTGCGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTAAAGGGGGCAAAAAATTGTCAAGAGACAATCAGATGCTGCGCT  849

seq1  CACTGCCGCCTTGGGAATTTGCGTTTCGCGATAAATACAGGCCCAGGGCT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTGCCGCCTTGGGAATTTGCGTTTCGCGATAAATACA-GCCCAGGGCT  898

seq1  CCCAGAGGTTTACAGTTACAGCAGCCTGGGAAAGGGGAAATCAAGTCTTT  950
      |||||||||||||||||||||||||||||  || ||||||||||||||||
seq2  CCCAGAGGTTTACAGTTACAGCAGCCTGG--AAAGGGAAATCAAGTCTTT  946

seq1  GTGGGTGCCTGCAAAGGGCAGCGCGGAAGGTGGTGCTGACAGCCACTGAG  1000
      || |||| ||||||  ||||||||||| |   |||||||||| |||||||
seq2  GT-GGTG-CTGCAA--GGCAGCGCGGACG--TGTGCTGACAG-CACTGAG  989

seq1  CTGGGCTGCTATGCGGGCGCGAAGGCTTGCAGGGGCGGGCCGGGCCGAGG  1050
      || ||||||||||| |||||||  ||||||| ||||||||   | ||| |
seq2  CT-GGCTGCTATGC-GGCGCGA--GCTTGCA-GGGCGGGC---GGCGA-G  1030

seq1  GGGATGGCTCACCCCTGGAAGGACATACAGATGC  1084
      |||||||||||||| ||    |||||||||||||
seq2  GGGATGGCTCACCCTTG---AGACATACAGATGC  1061

seq1: chr11_60617649_60618748
seq2: B6Ng01-143M01.g_66_1146 (reverse)

seq1  AAAAAAAAAGA-GGATTCATGTTAAGAGTTGAAAGTCAGCCTGAACCACA  49
      ||||||||||| ||||||   ||||||| || ||||||| ||||||| ||
seq2  AAAAAAAAAGAGGGATTCCATTTAAGAGGTG-AAGTCAG-CTGAACCCCA  48

seq1  TGGCAAGACCATGTTTCAACAAATAAAAACAAAAGGGTTAGACAGGACTT  99
      |||||||  |||| ||| |||||| |||||||||||| |||||| |||||
seq2  TGGCAAG--CATG-TTCCACAAAT-AAAACAAAAGGG-TAGACA-GACTT  92

seq1  TAAGAATGCCCACTCACCTTTGGCCTGGATATCCCTCAGAGTATTTGTTA  149
      | |||||||||||||||||||||||| ||||| |||||||||| ||||  
seq2  T-AGAATGCCCACTCACCTTTGGCCT-GATAT-CCTCAGAGTA-TTGT--  136

seq1  TTTAAGCAAGATCCCAGGGCCTCCAACACAGCTCGGCTGGCAAAATTCTC  199
       |||||| ||||||   ||||| |||||||||||||||||||||  ||||
seq2  ATTAAGC-AGATCC--AGGCCT-CAACACAGCTCGGCTGGCAAA--TCTC  180

seq1  CGAGGCAATCAGCTCTAATCCGACCCTCTGCCGGTTGCTCTCCTTTTTAA  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGAGGCAATCAGCTCTAATCCGACCCTCTGCCGGGTGCTCTCCTTTTTAA  230

seq1  TGATGCTGTAAACCTTATCAGAAGAAAGCAGACGTGGGGTTGGAGGGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGTAAACCTTATCAGAAGAAAGCAGACGTGGGGTTGGAGGGAAG  280

seq1  CTCAGTCCATAGAGTAAGCTCTAACATTCATAATGCCCTGGGTTTCATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCATAGAGTAAGCTCTAACATTCATAATGCCCTGGGTTTCATCC  330

seq1  CCAGCACTGGATAAATTGGGCAGGGTGGCACATCCTGCAATCTTAGCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGGATAAATTGGGCAGGGTGGCACATCCTGCAATCTTAGCACT  380

seq1  CATTACTGTGGAAGTAGGAGGATCAGAAGCCTCGGTCACCTCTGGCAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGTGGAAGTAGGAGGATCAGAAGCCTCGGTCACCTCTGGCAATA  430

seq1  CGAGTTTAAGAAAAACAGCAACAACGCTGTGACCAAAGATTGATGTTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTAAGAAAAACAGCAACAACGCTGTGACCAAAGATTGATGTTCTT  480

seq1  CACAGAGAAAATCCTGCACTGTTTTGATAGTGCTGTGTTTTTCTGAGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAATCCTGCACTGTTTTGATAGTGCTGTGTTTTTCTGAGAAG  530

seq1  ATAACATACATTTCCCTGGATCACTTAACTCCTCAAAATCTTTCTTTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATACATTTCCCTGGATCACTTAACTCCTCAAAATCTTTCTTTGTC  580

seq1  TTCTCTTTCAGGTGACCTGGATGGACAGCAAAGGAATCAAATCCCTGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCAGGTGACCTGGATGGACAGCAAAGGAATCAAATCCCTGAAA  630

seq1  TAATAATTTATTTGACTTGATTTTTAAAAATAAATAATTACATACAGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTATTTGACTTGATTTTTAAAAATAAATAATTACATACAGTAA  680

seq1  AAAAAAAGAAAGAAAAACAGCAACAACAAAAATAAATAAATTTAAAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGAAAAACAGCAACAACAAAAATAAATAAATTTAAAACAA  730

seq1  AATCAACAGAGGCTAGAGAGAAGCAGTTAGGAGCACTGACTACTCCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAGAGGCTAGAGAGAAGCAGTTAGGAGCACTGACTACTCCTCCA  780

seq1  GAGGTCCTGAATTCAGCTCCCAGCAACCACATGGTGACTCACAACCATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTGAATTCAGCTCCCAGCAACCACATGGTGACTCACAACCATCT  830

seq1  GTAATGGGATCCGATGCCCTCTTCTGTTGTGTCTGAAGACAGCTACAGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATCCGATGCCCTCTTCTGTTGTGTCTGAAGACAGCTACAGTG  880

seq1  TACTCACATATATAAAACAAACAGGACCTGCTAGTACAAGTCTATAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACATATATAAAACAAACAGGACCTGCTAGTACAAGTCTATAATTT  930

seq1  CAACACCTAGGAGTGAAGACAGGATGATCAGAGGTCCAAAGCCATCCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCTAGGAGTGAAGACAGGATGATCAGAGGTCCAAAGCCATCCTCA  980

seq1  GATAGCAAAACACAGCAAATTAATATCACAACTAGTTTTCATTGTTTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAAAACACAGCAAATTAATATCACAACTAGTTTTCATTGTTTTTA  1030

seq1  TTTGTTTGCTGAGACAGGGTTTCAGTATGTGTCTTGGTTGTTCTGGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCTGAGACAGGGTTTCAGTATGTGTCTTGGTTGTTCTGGAATT  1080

seq1  C  1100
      |
seq2  C  1081