BAC Information

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BAC

Clone NameB6Ng01-145O12
Chromosome11 (Build37)
Map Location 48,969,256 - 49,087,125
singlet/doubletdoublet
Overlap geneOlfr1394, Btnl9, Zfp62, Mgat1
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395
Downstream geneOlfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145O12.bB6Ng01-145O12.g
ACCDH943186DH943187
length1,0911,056
definitionDH943186|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O12, 5' end.DH943187|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,086,021 - 49,087,125)(48,969,256 - 48,970,325)
sequence
gaattcccattctaactcatccgcactgagtcagtctccttgaatccaag
ccaaaataagaccgctctcacaaacccacagtaaatcgagagacatttct
tttgtctgatttattccttgtggagaaaagtggggggagaagaactgaga
aaactgtgtgtgtgtgtgtgcatgtgtgtgcatgaatatttaccaaatat
atataaatatcatttttatcatatacaatatttacaatatatatccttgg
ctgtcctggaactcactctgtagaccaggttggccttgaatttcaagatc
caccagcctcccaagtgctgggatttaaaggcctgtaccactacctcttg
ataattttttgtttgtttgtttgtttttaatttcatgagtggcttttcct
catcttccgtttgtatcaggttctgacttgcacttgtacaagtggtttgg
tgctcacggcagcttcttttctcataaggaagagagccgtataagtaact
ctgcaatgatgatgtgcttctgtgtccgtgcatggcgcgggcacgtaact
gactacagggcccccagaaaaggacattggatcccctggagctggagttg
ctggcagttgtcaaccacccaacgtgatgctgggaagggaacttggacct
ctgcaagaccagtccatactcttaaccactgagccaactctccagttccc
gtgatagctgtcttagaattcttgcagagaagtagtgaaagacagaaatg
ttgctagtgattaaagtgcagggactatctttaccacattgtctgtaatg
cgtatacattttacaataggaaaaaagatggaggtgcaggggaaaggaca
ggtgctcctcttgggctttgaaggtaatgaaaacctcctgatatcaaggt
ctgctgggtacccagaccttctaggattcagcataagccttccagtaaac
aaagcttcgagggaccccaggagtctgtgttagaagttagcatatcttac
tttgaattgtgtgcatttctgcccccttagggacccaattccactggaat
gatagatccatcataagttttaacctccacttgatcaattt
gaattcttgaatcaacctaacgagcatatgtgttccctttgtggtgaaaa
tgtgcaagcattactaaccctcagcagctgtgaagcatgaaacattactt
tgtaccaagctcactgtattgtgcagtaaataagaaaatgtactttctcc
tctgcactgttactttcactggagtctcagggaatgtcctagatcctgac
agatgttttacaatttgtctgataaagctgatagtgtacacttccttgcc
caccacataggatggggtgtgagcactggcccaatttttctttcataaat
tggatgaatgtaacaaaataatggttctaaagagtttcatccacctagat
taagcactaagtttggcaaattatgtttgatagtgacatgcgcaggcatg
tccccagtacctgccctcatgttttctaaagtcaagtatcaggtaagata
gtggttgggttgcacccagattctccggcttcctggaaacctttgacatt
gacattcatctttgttcagcacccggctcttttgagggcaaaccaaaacc
tctccctacctagaaaaacagaaaaccctctcaacagacaaacatagagg
agaaagacaacaccttttgttactgaataagccttccaccagaggtgatg
ttcctcatggggaaaggccatgacgagaaagaagggaggctcaagctttt
gtattcacaaacccttgtaagcagatctgcctacatgcttatgcagctct
agggatggacctagctggcatggcaggggaataaagagaggacggacgga
cggacacacagaaaatctcagattgggtggaccaggctctccgatgggga
aactgcagctggaatctcctcaggtttattttatacagttggatagtgaa
ccaggttattgtataagctgacaagaaggtagggtataagacacagataa
caaggagctgggctatacacagctaacaaggagactggctaactagctgg
tagtgcagtctctaagggagcagtctcagctgtgaacatcaccaaggcag
aaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_49086021_49087125
seq2: B6Ng01-145O12.b_48_1138 (reverse)

seq1  AAATTGATCAAAGTGGAGGTTAAAAACTGTATTGATGGAATCCTATCATT  50
      ||||||||| ||||||||||| |||||| || |||||||   ||||||||
seq2  AAATTGATC-AAGTGGAGGTT-AAAACT-TA-TGATGGA--TCTATCATT  44

seq1  CAGTTGGAATGTGGGTTCCCCTTAGGGGGGCAAGAAATGCACACAATTCA  100
      |   |||||| |||||  |||| ||||||   ||||||||||||||||||
seq2  CCAGTGGAAT-TGGGT--CCCTAAGGGGG--CAGAAATGCACACAATTCA  89

seq1  AAGTAAGATAATGCTAACTTCTAACCACAGACTCCTGGGGTCCCTCGAAG  150
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AAGTAAGAT-ATGCTAACTTCTAA-CACAGACTCCTGGGGTCCCTCGAAG  137

seq1  CTTTGTTTTACTGGAAGGCTTATGCTGAATCCTAG-AGGTCTGGGTACCC  199
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTTG-TTTACTGGAAGGCTTATGCTGAATCCTAGAAGGTCTGGGTACCC  186

seq1  AGCAGACCTTGATATCAGGAGGTTTTCA-TACCTTCAAAGCCCAAGGAGG  248
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGCAGACCTTGATATCAGGAGGTTTTCATTACCTTCAAAGCCCAA-GAGG  235

seq1  AGCACCTGTCCTTTCCCCTGCACCTCCATCTTTTTTCCTAATTGTAAAAT  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCACCTGTCCTTTCCCCTGCACCTCCATCTTTTTTCCT-ATTGTAAAAT  284

seq1  GTATACGCATTACAGACAATGTGGTAAAGATAGTCCCTGCACTTTAATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACGCATTACAGACAATGTGGTAAAGATAGTCCCTGCACTTTAATCA  334

seq1  CTAGCAACATTTCTGTCTTTCACTACTTCTCTGCAAGAATTCTAAGACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACATTTCTGTCTTTCACTACTTCTCTGCAAGAATTCTAAGACAG  384

seq1  CTATCACGGGAACTGGAGAGTTGGCTCAGTGGTTAAGAGTATGGACTGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACGGGAACTGGAGAGTTGGCTCAGTGGTTAAGAGTATGGACTGGT  434

seq1  CTTGCAGAGGTCCAAGTTCCCTTCCCAGCATCACGTTGGGTGGTTGACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGGTCCAAGTTCCCTTCCCAGCATCACGTTGGGTGGTTGACAA  484

seq1  CTGCCAGCAACTCCAGCTCCAGGGGATCCAATGTCCTTTTCTGGGGGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCAACTCCAGCTCCAGGGGATCCAATGTCCTTTTCTGGGGGCCC  534

seq1  TGTAGTCAGTTACGTGCCCGCGCCATGCACGGACACAGAAGCACATCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAGTTACGTGCCCGCGCCATGCACGGACACAGAAGCACATCATC  584

seq1  ATTGCAGAGTTACTTATACGGCTCTCTTCCTTATGAGAAAAGAAGCTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGAGTTACTTATACGGCTCTCTTCCTTATGAGAAAAGAAGCTGCC  634

seq1  GTGAGCACCAAACCACTTGTACAAGTGCAAGTCAGAACCTGATACAAACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACCAAACCACTTGTACAAGTGCAAGTCAGAACCTGATACAAACG  684

seq1  GAAGATGAGGAAAAGCCACTCATGAAATTAAAAACAAACAAACAAACAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGGAAAAGCCACTCATGAAATTAAAAACAAACAAACAAACAAA  734

seq1  AAATTATCAAGAGGTAGTGGTACAGGCCTTTAAATCCCAGCACTTGGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCAAGAGGTAGTGGTACAGGCCTTTAAATCCCAGCACTTGGGAG  784

seq1  GCTGGTGGATCTTGAAATTCAAGGCCAACCTGGTCTACAGAGTGAGTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGATCTTGAAATTCAAGGCCAACCTGGTCTACAGAGTGAGTTCC  834

seq1  AGGACAGCCAAGGATATATATTGTAAATATTGTATATGATAAAAATGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAAGGATATATATTGTAAATATTGTATATGATAAAAATGATA  884

seq1  TTTATATATATTTGGTAAATATTCATGCACACACATGCACACACACACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATATTTGGTAAATATTCATGCACACACATGCACACACACACAC  934

seq1  ACAGTTTTCTCAGTTCTTCTCCCCCCACTTTTCTCCACAAGGAATAAATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCTCAGTTCTTCTCCCCCCACTTTTCTCCACAAGGAATAAATC  984

seq1  AGACAAAAGAAATGTCTCTCGATTTACTGTGGGTTTGTGAGAGCGGTCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGAAATGTCTCTCGATTTACTGTGGGTTTGTGAGAGCGGTCTT  1034

seq1  ATTTTGGCTTGGATTCAAGGAGACTGACTCAGTGCGGATGAGTTAGAATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCTTGGATTCAAGGAGACTGACTCAGTGCGGATGAGTTAGAATG  1084

seq1  GGAATTC  1105
      |||||||
seq2  GGAATTC  1091

seq1: chr11_48969256_48970325
seq2: B6Ng01-145O12.g_73_1128

seq1  GAATTCTTGAATCAACCTAACGAGCATATGTGTTCCCTTTGTGGTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATCAACCTAACGAGCATATGTGTTCCCTTTGTGGTGAAAA  50

seq1  TGTGCAAGCATTACTAACCCTCAGCAGCTGTGAAGCATGAAACATTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGCATTACTAACCCTCAGCAGCTGTGAAGCATGAAACATTACTT  100

seq1  TGTACCAAGCTCACTGTATTGTGCAGTAAATAAGAAAATGTACTTTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAAGCTCACTGTATTGTGCAGTAAATAAGAAAATGTACTTTCTCC  150

seq1  TCTGCACTGTTACTTTCACTGGAGTCTCAGGGAATGTCCTAGATCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTGTTACTTTCACTGGAGTCTCAGGGAATGTCCTAGATCCTGAC  200

seq1  AGATGTTTTACAATTTGTCTGATAAAGCTGATAGTGTACACTTCCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTACAATTTGTCTGATAAAGCTGATAGTGTACACTTCCTTGCC  250

seq1  CACCACATAGGATGGGGTGTGAGCACTGGCCCAATTTTTCTTTCATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATAGGATGGGGTGTGAGCACTGGCCCAATTTTTCTTTCATAAAT  300

seq1  TGGATGAATGTAACAAAATAATGGTTCTAAAGAGTTTCATCCACCTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATGTAACAAAATAATGGTTCTAAAGAGTTTCATCCACCTAGAT  350

seq1  TAAGCACTAAGTTTGGCAAATTATGTTTGATAGTGACATGCGCAGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTAAGTTTGGCAAATTATGTTTGATAGTGACATGCGCAGGCATG  400

seq1  TCCCCAGTACCTGCCCTCATGTTTTCTAAAGTCAAGTATCAGGTAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTACCTGCCCTCATGTTTTCTAAAGTCAAGTATCAGGTAAGATA  450

seq1  GTGGTTGGGTTGCACCCAGATTCTCCGGCTTCCTGGAAACCTTTGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGGTTGCACCCAGATTCTCCGGCTTCCTGGAAACCTTTGACATT  500

seq1  GACATTCATCTTTGTTCAGCACCCGGCTCTTTTGAGGGCAAACCAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCATCTTTGTTCAGCACCCGGCTCTTTTGAGGGCAAACCAAAACC  550

seq1  TCTCCCTACCTAGAAAAACAGAAAACCCTCTCAACAGACAAACATAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTACCTAGAAAAACAGAAAACCCTCTCAACAGACAAACATAGAGG  600

seq1  AGAAAGACAACACCTTTTGTTACTGAATAAGCCTTCCACCAGAGGTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAACACCTTTTGTTACTGAATAAGCCTTCCACCAGAGGTGATG  650

seq1  TTCCTCATGGGGAAAGGCCATGACGAGAAAGAAGGGAGGCTCAAGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATGGGGAAAGGCCATGACGAGAAAGAAGGGAGGCTCAAGCTTTT  700

seq1  GTATTCACAAACCCTTGTAAGCAGATCTGCCTACATGCTTATGCAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACAAACCCTTGTAAGCAGATCTGCCTACATGCTTATGCAGCTCT  750

seq1  AGGGATGGACCTAGCTGGCATGGCAGGGGAATAAAGAGAGGACGGACGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGACCTAGCTGGCATGGCAGGGGAATAAAGAGAGGACGGACGGA  800

seq1  CGGACACACAGAAAATCTCAGATTGGGTGGACCAGGCTCTCCGATGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACACACAGAAAATCTCAGATTGGGTGGACCAGGCTCTCCGATGGGGA  850

seq1  AACTGCAGCTGGAATCTCCTCAGGTTTATTTTATACAGTTGGATAGTGAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACTGCAGCTGGAATCTCCTCAGGTTTATTTTATACAGTTGGATAGTG-A  899

seq1  ACAAGGTTATTGTATAAGCTGAACAAGAAGGTAGGGTTATAAGACACAGA  950
      || |||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ACCAGGTTATTGTATAAGCTG-ACAAGAAGGTAGGG-TATAAGACACAGA  947

seq1  TAAACAAGGAGCCTGGGCTATTACACAGCTAAACAAAGAGACTGGCTTAC  1000
      | ||||||||| |||||||| ||||||||| ||||| ||||||||| || 
seq2  T-AACAAGGAG-CTGGGCTA-TACACAGCT-AACAAGGAGACTGGC-TAA  992

seq1  CTAGCTTGGTAAGTGCAGTCTCTGTAGGGGAGCAGTCTTCAGGCTGTGAC  1050
      ||||| |||| |||||||||||  || |||||||||| ||| ||||||| 
seq2  CTAGC-TGGT-AGTGCAGTCTC--TAAGGGAGCAGTC-TCA-GCTGTGAA  1036

seq1  CATCCACAAGGCAGAAAGCT  1070
      ||||  ||||||||||||||
seq2  CATCACCAAGGCAGAAAGCT  1056