BAC Information

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BAC

Clone NameB6Ng01-146B07
Chromosome11 (Build37)
Map Location 72,799,911 - 72,947,399
singlet/doubletdoublet
Overlap geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
Downstream geneGsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146B07.bB6Ng01-146B07.g
ACCDH943316DH943317
length1,1631,157
definitionDH943316|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B07, 5' end.DH943317|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,946,215 - 72,947,399)(72,799,911 - 72,800,598)
sequence
gaattctttgtggtcagaagggctttggcttgtgttcatgtacatcactg
agggtctgcaatgagagggcatgtgtgagaacgcaaggttccttcctggt
tccgaatgaacttagtgtttcccgatgagtacactaggacattcagcaca
gggccttaagaagactcaacgctggaagtcaaaatgtgaagtgcttggaa
ggcagctgggacagaagaatgtttgtaagccatgcagttggactctaccc
agctggagttttccatcttttctccaactttgtgcgtgtgtacacgtggc
agtgtacttgcctgtcaatgtcaggtcccctactctctcctagtttttga
cagtgtctcactgagcctgggagcttgctgttgtagctaaactggcttgc
tggcaagcccaaaggatatgcctctctgaccccacccaccccggcacgga
cattacaggtgtgggccacaccaccagacttctctgtggttgctgagaac
ctgaactcaggtccccatgagacaacttttctcactgagccccctcccag
ccccttctccaaccccacagccactctgatagcatcacatcggttccctt
tggtagcaggaccagttggcagtgggcctctgatgaccaccacggtgttt
caaaagcccaacgtgacgtatgctagtgataaagaaaccaaaactactgc
tccgtgagtgaaaaggaagttcattccacactgccaaggctgtctctagc
atagaccttgatatgctgataggtaccccaagtaaattggagagccatgt
gtctgcttttgccagaggtaagagaaatggctccttttggcagatgggaa
ccaggttcacaagttcctaaagaatactagcatttatttaaccacccgaa
atcctgtagtctaggttaagttgggcctagactcattttggacgtcagtg
agactgcccttttgttgggcgggcttgggggagtaccccttgatctgaca
gtatctagagagttgggcgctagcagcctcctagagaggcgatgggcttt
ctgtccaccagaatcccaaactgttcgcatgcatgacgtcacacaaccct
tgggagtacccttctgtagaactgcatgaaagctgtccgaatgaaggctg
ctgtctccctggc
gaattccaggacagccaggactacacagagaaaccctgtctcaaaaagca
aaaaaaaaaaaggaaagaaatttgtatatgttcccaagcgtatagctata
aaaatacatatacaaatcaattacttgttaatagtaaatcacaaggaaat
ttattttaaaataattatgccaactaggaccttaatcccagcacctagga
ggtagaggcaggtggatttctgtgagtttgagactagtctggtctactta
gcaagttccaggccagccagagatatatagtgagacctgtctcaaacaaa
tcaaaagcgggctggagagatagctcagcagttaaaaacactggctgctc
ttatagaggacctggcctagatcctcagcaaatgtgtaacagctcacaac
agcctgcaactccaggtccagggggatctgataacctctgagggtaccag
acaaagacactcacgtggtacacagacatacatgcaagcaaaacacctac
acatataaaagtgtgtgtgtgtgtgtgtgtgtccaaaccagagctataga
gataactcagtggttaagagcactggctgctcttacagagaacccaggtt
caattcccagcagctcatcactgcctgtaattccagttccaggagatctg
acaccttcatacagacatgcatatatcagtgcacataaaataaaaataaa
tcatttaaaaatcaaaaccaacaacagtacccagatctctggtatagatc
taatttcaccattaaagagaaaagtgaggtgcacgctactgagctggagg
tgtttgctctctgtttttatatggcctagtacccaggtccaggaaatgct
attgcctggtatcagctgggggtcccacactgatcagcatatcaagacgg
ttgtactcacaggccaacctggtctacagattccctcactgggactctaa
attgcgtcaagtcaacaatttaaaaggaaccaccacacccatcctcagtc
atatgacccctaaagattcaacccagtttcaaagctgggcttgggctgag
gtgtggctcagttgaatcatgttgctaaccgcagacgccggattgttcta
gctatccataactggtcggctgtagactcactgtaggaggatgtagccaa
gccatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72946215_72947399
seq2: B6Ng01-146B07.b_47_1209 (reverse)

seq1  GCCAGAGAGACACGCAGCCTTCAATTCAGACATGCCTTCATTGCAGTTCT  50
      ||||| |||||| ||||||||| |||| |||| || |||| |||||||| 
seq2  GCCAGGGAGACA-GCAGCCTTC-ATTCGGACA-GCTTTCA-TGCAGTTC-  45

seq1  TTCCAGGTAGGTACTCCCAAGGGGTCTGTGTGACGGTCATGCAATGGCGA  100
       | |||   ||||||||||||||   |||||||| ||||||| |||   |
seq2  -TACAGAAGGGTACTCCCAAGGG--TTGTGTGAC-GTCATGC-ATGCGAA  90

seq1  CAGTTTTGGGATTCTGTGTGGACAGAAAGCCCATCGCCCTTCTCTGAGGA  150
      ||| |||||||||||| |||||||||||||||||||||  ||||| ||||
seq2  CAG-TTTGGGATTCTG-GTGGACAGAAAGCCCATCGCC--TCTCT-AGGA  135

seq1  GGCTGCTTAGCGCCCAACCTCTCTAGGATACTGTCAGATCCAAGGGGTAC  200
      |||||| |||||||||| ||||||| ||||||||||||| ||||||||| 
seq2  GGCTGC-TAGCGCCCAA-CTCTCTA-GATACTGTCAGAT-CAAGGGGTA-  180

seq1  CTCCCCCAAGCCCCGCCCACCAAAAGGGCAGTCTCACTGACGTCCAAAAT  250
      |||||||||| |||||||| ||||||||||||||||||||||||||||| 
seq2  CTCCCCCAAG-CCCGCCCAACAAAAGGGCAGTCTCACTGACGTCCAAAA-  228

seq1  TGAGTCTAGGCCCAACTTAACCTAGACTACAGGATTTCGGGTGGTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTAGGCCCAACTTAACCTAGACTACAGGATTTCGGGTGGTTAAAT  278

seq1  AAATGCTAGTATTCTTTAGGAACTTGTGAACCTGGTTCCCATCTGCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAGTATTCTTTAGGAACTTGTGAACCTGGTTCCCATCTGCCAAA  328

seq1  AGGAGCCATTTCTCTTACCTCTGGCAAAAGCAGACACATGGCTCTCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCATTTCTCTTACCTCTGGCAAAAGCAGACACATGGCTCTCCAAT  378

seq1  TTACTTGGGGTACCTATCAGCATATCAAGGTCTATGCTAGAGACAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGGGTACCTATCAGCATATCAAGGTCTATGCTAGAGACAGCCTT  428

seq1  GGCAGTGTGGAATGAACTTCCTTTTCACTCACGGAGCAGTAGTTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTGGAATGAACTTCCTTTTCACTCACGGAGCAGTAGTTTTGGTT  478

seq1  TCTTTATCACTAGCATACGTCACGTTGGGCTTTTGAAACACCGTGGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCACTAGCATACGTCACGTTGGGCTTTTGAAACACCGTGGTGGT  528

seq1  CATCAGAGGCCCACTGCCAACTGGTCCTGCTACCAAAGGGAACCGATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGGCCCACTGCCAACTGGTCCTGCTACCAAAGGGAACCGATGTG  578

seq1  ATGCTATCAGAGTGGCTGTGGGGTTGGAGAAGGGGCTGGGAGGGGGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCAGAGTGGCTGTGGGGTTGGAGAAGGGGCTGGGAGGGGGCTCA  628

seq1  GTGAGAAAAGTTGTCTCATGGGGACCTGAGTTCAGGTTCTCAGCAACCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAAGTTGTCTCATGGGGACCTGAGTTCAGGTTCTCAGCAACCAC  678

seq1  AGAGAAGTCTGGTGGTGTGGCCCACACCTGTAATGTCCGTGCCGGGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTCTGGTGGTGTGGCCCACACCTGTAATGTCCGTGCCGGGGTGG  728

seq1  GTGGGGTCAGAGAGGCATATCCTTTGGGCTTGCCAGCAAGCCAGTTTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTCAGAGAGGCATATCCTTTGGGCTTGCCAGCAAGCCAGTTTAGC  778

seq1  TACAACAGCAAGCTCCCAGGCTCAGTGAGACACTGTCAAAAACTAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGCAAGCTCCCAGGCTCAGTGAGACACTGTCAAAAACTAGGAGA  828

seq1  GAGTAGGGGACCTGACATTGACAGGCAAGTACACTGCCACGTGTACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGGACCTGACATTGACAGGCAAGTACACTGCCACGTGTACACAC  878

seq1  GCACAAAGTTGGAGAAAAGATGGAAAACTCCAGCTGGGTAGAGTCCAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGTTGGAGAAAAGATGGAAAACTCCAGCTGGGTAGAGTCCAACT  928

seq1  GCATGGCTTACAAACATTCTTCTGTCCCAGCTGCCTTCCAAGCACTTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTTACAAACATTCTTCTGTCCCAGCTGCCTTCCAAGCACTTCAC  978

seq1  ATTTTGACTTCCAGCGTTGAGTCTTCTTAAGGCCCTGTGCTGAATGTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACTTCCAGCGTTGAGTCTTCTTAAGGCCCTGTGCTGAATGTCCT  1028

seq1  AGTGTACTCATCGGGAAACACTAAGTTCATTCGGAACCAGGAAGGAACCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTCATCGGGAAACACTAAGTTCATTCGGAACCAGGAAGGAACCT  1078

seq1  TGCGTTCTCACACATGCCCTCTCATTGCAGACCCTCAGTGATGTACATGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCTCACACATGCCCTCTCATTGCAGACCCTCAGTGATGTACATGA  1128

seq1  ACACAAGCCAAAGCCCTTCTGACCACAAAGAATTC  1185
      |||||||||||||||||||||||||||||||||||
seq2  ACACAAGCCAAAGCCCTTCTGACCACAAAGAATTC  1163

seq1: chr11_72799911_72800598
seq2: B6Ng01-146B07.g_561_1225

seq1  ACACCTACACATATAAAAGTGTGTGTGTGTGTGTGTGTGTCCAAACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACACATATAAAAGTGTGTGTGTGTGTGTGTGTGTCCAAACCAGA  50

seq1  GCTATAGAGATAACTCAGTGGTTAAGAGCACTGGCTGCTCTTACAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGAGATAACTCAGTGGTTAAGAGCACTGGCTGCTCTTACAGAGAA  100

seq1  CCCAGGTTCAATTCCCAGCAGCTCATCACTGCCTGTAATTCCAGTTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTCAATTCCCAGCAGCTCATCACTGCCTGTAATTCCAGTTCCAG  150

seq1  GAGATCTGACACCTTCATACAGACATGCATATATCAGTGCACATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGACACCTTCATACAGACATGCATATATCAGTGCACATAAAATA  200

seq1  AAAATAAATCATTTAAAAATCAAAACCAACAACAGTACCCAGATCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATCATTTAAAAATCAAAACCAACAACAGTACCCAGATCTCTGG  250

seq1  TATAGATCTAATTTCACCATTAAAGAGAAAAGTGAGGTGCACGCTACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCTAATTTCACCATTAAAGAGAAAAGTGAGGTGCACGCTACTGA  300

seq1  GCTGGAGGTGTTTGCTCTCTGTTTTTATATGGCCTAGTACCCAGGTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGTGTTTGCTCTCTGTTTTTATATGGCCTAGTACCCAGGTCCAG  350

seq1  GAAATGCTATTGCCTGGTATCAGGCTGGGGGTCCCACACTGATCAGCATA  400
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  GAAATGCTATTGCCTGGTATCA-GCTGGGGGTCCCACACTGATCAGCAT-  398

seq1  ATCAAGACGGTTGTACTCACAGGCCAACCTGGTCTACAGATTCCCTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACGGTTGTACTCACAGGCCAACCTGGTCTACAGATTCCCTCACT  448

seq1  GGGACTCTAAATTGCGTCAAGTCAACAA-TTAAAAGGAACCACCACACCC  499
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGACTCTAAATTGCGTCAAGTCAACAATTTAAAAGGAACCACCACACCC  498

seq1  ATCCTCAGTCATATGACCCCTTAAAGGATTCAACCCAGTTTCAGAAGCTG  549
      |||||||||||||||||||||  || ||||||||||||||||| ||||||
seq2  ATCCTCAGTCATATGACCCCT--AAAGATTCAACCCAGTTTCA-AAGCTG  545

seq1  GGCTGGGGCTGAGGGTGTGGCTCAGTTGATACAGTGTTTGCCTAACCCGC  599
      |||| ||||||| ||||||||||||||||  || ||||   |||| ||||
seq2  GGCTTGGGCTGA-GGTGTGGCTCAGTTGAATCA-TGTT--GCTAA-CCGC  590

seq1  AGGACAGTCTGGGTTTGGTTCATGCTACTCAGTAAACTGGGTACGGGGCT  649
      ||   |  | || ||  ||||  ||||  ||   ||||||      ||||
seq2  AG---ACGCCGGATT--GTTCTAGCTATCCA--TAACTGG----TCGGCT  629

seq1  GTAAGCTCAGCTTGTAGGAGGGATGTAGCCAAGCCATAG  688
      |||  ||||   ||||||| |||||||||||||||||||
seq2  GTAGACTCA--CTGTAGGA-GGATGTAGCCAAGCCATAG  665