BAC Information

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BAC

Clone NameB6Ng01-146C12
Chromosome11 (Build37)
Map Location 45,202,171 - 45,340,368
singlet/doubletdoublet
Overlap genenone
Upstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1, LOC382510
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146C12.bB6Ng01-146C12.g
ACCDH943374DH943375
length1,1811,063
definitionDH943374|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C12, 5' end.DH943375|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,339,185 - 45,340,368)(45,202,171 - 45,203,234)
sequence
gaattctttctctcttaaacctgtccctgcccctaggtgttttttaatca
cagtaacagacgtgaagctggaacagcactgtgctgagtttctgcccata
tttagtctctgaagacaagacaaatttcattctttctggttcttcagatg
agaagttaaaaatgatgtcttagtctatttgtgtttccataacaaaatac
ccacatctggtctaggtactcgatacagtcctttgtttggttcctgattc
tggggactagaaatctaaacaatatgacgtcagtccatggccagagcata
atgtgtcagagaagcagaagggggaatgatttttacccagagaggaccaa
gcacaggacttagctgcattctagcaggaattaaccccacttaaggaaaa
ctatgttagtctctttcatgggtagtgccccatcatctaataactgcctt
ctaatccctatgtcttaaagatacaccaaatctcaatatcattataatag
ggaccaagcttctgtgaacctttggggagacatgctcaaacaatatctaa
accatggaagtagcttcattaaggctagtcaaaattgagcatatttcctt
ttgagcttctgcatagagaactcaccttctgggtaactttgcccctgctc
atagcctctgtattcctttgcttatagttctgtctttgtgtatttcacat
tgcatcattccagtcacatccttctcatcttcccaacagatggagtcaaa
tctacacctgctttcctttctaaacatgctcctgatagcacctacccctt
acctagacagtccaacataacctcatagttctaattgaagtgcgtctacc
aagtcttgtctcaggtaggattcacaggctatgctgggtttatttggggg
ggacatatttagctcacctcatgggtatttcttttaccgaacaacacaca
acagtaatataatattgaaagtgaggaagtaaaataattttcaggtgatg
gtaggctgacccttcttgagtggtccgcctagatcctgcgatttctttga
acacagcctgttttattcttacaccatctgttgcccttttcctggttgca
ttttggtttctggctcctaatgggagaaagaacctcttcagtcttcaaat
ccattttccctccaaaagaaaaatgaatggc
gaattccctgggagagttatgtctcaggcaggcctgtgggggattattat
gatggagttaactgatgtgatcagacccatcttaactgtgggtcgatcca
tttccagagctggggatccctggcttgggctgtataaaatgaagcaagca
agctaaggagttagctggtactcatctcttcctgcttcctgactgaggat
gggcccgtgagcatctgcttcaggcgccttccatcttgactttcccacca
tgatgcaccttgaacagaagtggcaaaaaactgaacaacacagacactag
aaaccgtaatgtctgagttagaaggaataaagattcataagggtagatgg
cggaaataccatggtatacacggcaaaggaaaaaaaaaaatatgttgtag
aaaacttggccagaaaaccgttaactatgatatgattttttttacaagta
taataaagaaaaatctggaaggatatacaacgaactggaaacagtgtcta
cctcaggggaagtatgtgggattttaagagtcgagggggagagactaagt
tttattcttcctacttcctattgcttgacttcccccccaacaactatgat
gtattactttttacacatgaataaaaatagaaggattttttaaaaaccca
gtggagtgttcctgtccagaagcagcagccatcttgggggctgttagcca
ttacctctgctcattcccttcagaccaagaagggctgaaggagcctcagt
gttctctgctgcgtgttaaccggggcattgaatctaacttgccataccct
tgtaatttggatccttccagtaaagctgcctcaataaaatgtcccaagtg
ccagagcccagtgtttaggagccacagaggactctggtggcagctttgtg
ggtgggggcaggggcctgggcttgggggcttgggtctaaaatactgatag
agcatgcattaagtttcaagccaagtttaactagcagcaaaggggcaggc
tgcatttttcattcaggcttaaaaaaactagttgcaaggctagggaatcc
ccgggtagcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_45339185_45340368
seq2: B6Ng01-146C12.b_47_1227 (reverse)

seq1  GCCACTCATTTTTCTTTTTTTGATGGAAAAATGAAATGGAAGACTGGAAG  50
      |||| |||||||||   |||||  || |||||| | | ||||||| ||||
seq2  GCCATTCATTTTTC---TTTTGGAGGGAAAATGGATTTGAAGACT-GAAG  46

seq1  AG--TCTTCTTACCATTAAGAAGCAGACAC--AAATGCAAACCAGAAAAG  96
      ||  ||||  | |||||| ||  |||| ||  |||||||| |  ||||||
seq2  AGGTTCTTTCTCCCATTAGGAGCCAGAAACCAAAATGCAACCAGGAAAAG  96

seq1  GCAAACAGAT-GTGTAAG-ATAAAACA-GCTGTGTTCAAAGAAATCGCAA  143
      |  ||||||| ||||||| |||||||| ||||||||||||||||||||| 
seq2  GGCAACAGATGGTGTAAGAATAAAACAGGCTGTGTTCAAAGAAATCGCAG  146

seq1  GATCTAGGC-GACCACTCAAG-AGTGTCAGCCCTACCATCACCCTGAAAA  191
      ||||||||| ||||||||||| || ||||| |||||||||| ||||||||
seq2  GATCTAGGCGGACCACTCAAGAAGGGTCAG-CCTACCATCA-CCTGAAAA  194

seq1  TTATTTTACTTCCCTCACTTTCAAGTATTATTATTACTGTTGTTGTTGTT  241
      ||||||||||| |||||||||||| ||||| ||||||||||||   ||||
seq2  TTATTTTACTT-CCTCACTTTCAA-TATTA-TATTACTGTTGT--GTGTT  239

seq1  GTTCGGTAAAAGAAATACCCATGAGGTGAGCTAAATATTGTCCCCCCCAA  291
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTCGGTAAAAGAAATACCCATGAGGTGAGCTAAATA-TGTCCCCCCCAA  288

seq1  ATAAACCCAGCATAGCCTGTGAATCCTACCTGAGACAAGACTTGGTAGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCAGCATAGCCTGTGAATCCTACCTGAGACAAGACTTGGTAGAC  338

seq1  GCACTTCAATTAGAACTATGAGGTTATGTTGGACTGTCTAGGTAAGGGGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCAATTAGAACTATGAGGTTATGTTGGACTGTCTAGGTAAGGGGT  388

seq1  AGGTGCTATCAGGAGCATGTTTAGAAAGGAAAGCAGGTGTAGATTTGACT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTATCAGGAGCATGTTTAGAAAGGAAAGCAGGTGTAGATTTGACT  438

seq1  CCATCTGTTGGGAAGATGAGAAGGATGTGACTGGAATGATGCAATGTGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTTGGGAAGATGAGAAGGATGTGACTGGAATGATGCAATGTGAA  488

seq1  ATACACAAAGACAGAACTATAAGCAAAGGAATACAGAGGCTATGAGCAGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAAGACAGAACTATAAGCAAAGGAATACAGAGGCTATGAGCAGG  538

seq1  GGCAAAGTTACCCAGAAGGTGAGTTCTCTATGCAGAAGCTCAAAAGGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTTACCCAGAAGGTGAGTTCTCTATGCAGAAGCTCAAAAGGAAA  588

seq1  TATGCTCAATTTTGACTAGCCTTAATGAAGCTACTTCCATGGTTTAGATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCAATTTTGACTAGCCTTAATGAAGCTACTTCCATGGTTTAGATA  638

seq1  TTGTTTGAGCATGTCTCCCCAAAGGTTCACAGAAGCTTGGTCCCTATTAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGCATGTCTCCCCAAAGGTTCACAGAAGCTTGGTCCCTATTAT  688

seq1  AATGATATTGAGATTTGGTGTATCTTTAAGACATAGGGATTAGAAGGCAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTGAGATTTGGTGTATCTTTAAGACATAGGGATTAGAAGGCAG  738

seq1  TTATTAGATGATGGGGCACTACCCATGAAAGAGACTAACATAGTTTTCCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGATGATGGGGCACTACCCATGAAAGAGACTAACATAGTTTTCCT  788

seq1  TAAGTGGGGTTAATTCCTGCTAGAATGCAGCTAAGTCCTGTGCTTGGTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGGTTAATTCCTGCTAGAATGCAGCTAAGTCCTGTGCTTGGTCC  838

seq1  TCTCTGGGTAAAAATCATTCCCCCTTCTGCTTCTCTGACACATTATGCTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGTAAAAATCATTCCCCCTTCTGCTTCTCTGACACATTATGCTC  888

seq1  TGGCCATGGACTGACGTCATATTGTTTAGATTTCTAGTCCCCAGAATCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGGACTGACGTCATATTGTTTAGATTTCTAGTCCCCAGAATCAG  938

seq1  GAACCAAACAAAGGACTGTATCGAGTACCTAGACCAGATGTGGGTATTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAACAAAGGACTGTATCGAGTACCTAGACCAGATGTGGGTATTTT  988

seq1  GTTATGGAAACACAAATAGACTAAGACATCATTTTTAACTTCTCATCTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAAACACAAATAGACTAAGACATCATTTTTAACTTCTCATCTGA  1038

seq1  AGAACCAGAAAGAATGAAATTTGTCTTGTCTTCAGAGACTAAATATGGGC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGAAAGAATGAAATTTGTCTTGTCTTCAGAGACTAAATATGGGC  1088

seq1  AGAAACTCAGCACAGTGCTGTTCCAGCTTCACGTCTGTTACTGTGATTAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCAGCACAGTGCTGTTCCAGCTTCACGTCTGTTACTGTGATTAA  1138

seq1  AAAACACCTAGGGGCAGGGACAGGTTTAAGAGAGAAAGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCTAGGGGCAGGGACAGGTTTAAGAGAGAAAGAATTC  1181

seq1: chr11_45202171_45203234
seq2: B6Ng01-146C12.g_69_1131

seq1  GAATTCCCTGGGAGAGTTATGTCTCAGGCAGGCCTGTGGGGGATTATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGGAGAGTTATGTCTCAGGCAGGCCTGTGGGGGATTATTAT  50

seq1  GATGGAGTTAACTGATGTGATCAGACCCATCTTAACTGTGGGTCGATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTTAACTGATGTGATCAGACCCATCTTAACTGTGGGTCGATCCA  100

seq1  TTTCCAGAGCTGGGGATCCCTGGCTTGGGCTGTATAAAATGAAGCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGCTGGGGATCCCTGGCTTGGGCTGTATAAAATGAAGCAAGCA  150

seq1  AGCTAAGGAGTTAGCTGGTACTCATCTCTTCCTGCTTCCTGACTGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGAGTTAGCTGGTACTCATCTCTTCCTGCTTCCTGACTGAGGAT  200

seq1  GGGCCCGTGAGCATCTGCTTCAGGCGCCTTCCATCTTGACTTTCCCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGTGAGCATCTGCTTCAGGCGCCTTCCATCTTGACTTTCCCACCA  250

seq1  TGATGCACCTTGAACAGAAGTGGCAAAAAACTGAACAACACAGACACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCACCTTGAACAGAAGTGGCAAAAAACTGAACAACACAGACACTAG  300

seq1  AAACCGTAATGTCTGAGTTAGAAGGAATAAAGATTCATAAGGGTAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGTAATGTCTGAGTTAGAAGGAATAAAGATTCATAAGGGTAGATGG  350

seq1  CGGAAATACCATGGTATACACGGCAAAGGAAAAAAAAAAATATGTTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAATACCATGGTATACACGGCAAAGGAAAAAAAAAAATATGTTGTAG  400

seq1  AAAACTTGGCCAGAAAACCGTTAACTATGATATGATTTTTTTTACAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGCCAGAAAACCGTTAACTATGATATGATTTTTTTTACAAGTA  450

seq1  TAATAAAGAAAAATCTGGAAGGATATACAACGAACTGGAAACAGTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGAAAAATCTGGAAGGATATACAACGAACTGGAAACAGTGTCTA  500

seq1  CCTCAGGGGAAGTATGTGGGATTTTAAGAGTCGAGGGGGAGAGACTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGGAAGTATGTGGGATTTTAAGAGTCGAGGGGGAGAGACTAAGT  550

seq1  TTTATTCTTCCTACTTCCTATTGCTTGACTTCCCCCCCAACAACTATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTCCTACTTCCTATTGCTTGACTTCCCCCCCAACAACTATGAT  600

seq1  GTATTACTTTTTACACATGAATAAAAATAGAAGGATTTTTTAAAAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTTTTTACACATGAATAAAAATAGAAGGATTTTTTAAAAACCCA  650

seq1  GTGGAGTGTTCCTGTCCAGAAGCAGCAGCCATCTTGGGGGCTGTTAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGTTCCTGTCCAGAAGCAGCAGCCATCTTGGGGGCTGTTAGCCA  700

seq1  TTACCTCTGCTCATTCCCTTCAGACCAAGAAGGGCTGAAGGAGCCTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTGCTCATTCCCTTCAGACCAAGAAGGGCTGAAGGAGCCTCAGT  750

seq1  GTTCTCTGCTGCGTTGTTAACCGGGGCATTGAATCTAACTTGCCATACCC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGCTGCG-TGTTAACCGGGGCATTGAATCTAACTTGCCATACCC  799

seq1  -TGTAA-TTGGATCCTTCCAGTAAAGCTGCCTCAATAAAATGTCCCAAGT  848
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTGGATCCTTCCAGTAAAGCTGCCTCAATAAAATGTCCCAAGT  849

seq1  GCCAGAGCCAAGTGTTTAGGAGCCACAGAGGACTCTGGTGGCAGCTTTGT  898
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCCCAGTGTTTAGGAGCCACAGAGGACTCTGGTGGCAGCTTTGT  899

seq1  GGGTTGGGGGCAGGGGCCTGGGCTTGGGGGCTTGGGTCTAAAATACTGTA  948
      ||| ||||||||||||||||||||||||||||||||||||||||||||  
seq2  GGG-TGGGGGCAGGGGCCTGGGCTTGGGGGCTTGGGTCTAAAATACTGAT  948

seq1  GGAGGCATGCATTAAAGTTCCAGCC-AGCTTAACTAGCAGCAGAGGGGCA  997
       || |||||||||||  ||| |||| || ||||||||||||| |||||||
seq2  AGA-GCATGCATTAAGTTTCAAGCCAAGTTTAACTAGCAGCAAAGGGGCA  997

seq1  GGCCTGCATTTTTCATGCAGGCTTAGACAGACTAGTTTGCAAGGCTTGGG  1047
      || ||||||||||||| |||||||| | | ||||| |||||||||| |||
seq2  GG-CTGCATTTTTCATTCAGGCTTAAAAAAACTAG-TTGCAAGGCTAGGG  1045

seq1  -ATCCCCGGTGAGCAGTT  1064
       ||||||||  |||||||
seq2  AATCCCCGGGTAGCAGTT  1063