BAC Information

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BAC

Clone NameB6Ng01-146D03
Chromosome11 (Build37)2 (Build37)
Map Location 22,861,774 - 22,862,05291,862,451 - 91,863,092
singlet/doubletsingletsinglet
Overlap geneCommd1
Upstream geneLOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik
Downstream geneZrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146D03.bB6Ng01-146D03.g
ACCDH943404DH943405
length558642
definitionDH943404|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D03, 5' end.DH943405|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,861,774 - 22,862,052)(91,862,451 - 91,863,092)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aacaacaacaacaagatttgttttgggttttttgtttgtttttttgtttt
tcaagacagggtttttctgtgtaatggctttggctgtcctggatttgctt
tgtagtctggatttgtagtctgggatggccttaaactcacagagatttca
ctgcctttgcctccgaagcactgggaataaagacacgcaccatgaggccc
agccttgatcttaaaattttaagtttttcaaacaattataaccaataaaa
taaaaatcattcaaattcccaccatgttctccccataagatagctactgc
ttgtattttcatttaattaatttagtaacattagaaaattaatttttatt
ttatttatttatttatttatttatttatttatttattttggtttttcgag
acagggtttctctgtatagctctggctgtcctggaactcagtgggtagac
caggctgggctcgtagtcataaaggcagctgcctctgcctcgcgagtgct
gggattaa
gaattctttcctgcactggagcaaggccagaagagcagctacagagcaga
gcaggctgcagcgttcattgagaagaaagcccagctcagtcggtccccag
ctgcactgtccctggagcctgggccccaacaaacctctttccctctgagc
agaatcttttacctgctccaagagggctatgtggtccctcaggaagctgt
tgttttactcctgggaagcatctagaaccatccttaggaagcactggccc
ggtttccctccattttacagatcaggtaatggaggcctgagggggaaaga
gagacacgcatggcccaggctcacaagggaaacagaggcaggatgagggt
gttgccacttctcctaagactaagcatctctcctagttccttccatctga
tgtagaagactaagacttgaacaacctccctcagacagcaaggccgggac
atgctgcttgagaatgcctgggagatctgtcaccccatgactccctaact
gatggagacgcgaaatcaagctgagcaggacactcaatgacatctaaggc
ctttgtctgcttaagttttgttagagcaagaggtagagacaaacaggtgg
ggagccatgtgtttggtctctggtgtgtgtggggtggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_22861774_22862052
seq2: B6Ng01-146D03.b_433_598 (reverse)

seq1  TTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGG  50
      |||||||||||||||  |||||||||||||  |  ||| ||| | | || 
seq2  TTAATCCCAGCACTCGCGAGGCAGAGGCAGCTGCCTTTATGACTACGAGC  50

seq1  CCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGA  100
      |||||||| |||||  | ||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACCCACTGAGTTCCAGGACAGCCAGAGCTATACAGAGA  100

seq1  AACCCTGTCTCGAAAAACC-------------AAATAAATAAATAAATAA  137
      |||||||||||||||||||             ||||||||||||||||||
seq2  AACCCTGTCTCGAAAAACCAAAATAAATAAATAAATAAATAAATAAATAA  150

seq1  ATAAATAAAATAAAAAATTGTATCTTGTGCACATGGGTGTTTTGTTTGCA  187
      ||||||||||||||||                                  
seq2  ATAAATAAAATAAAAA----------------------------------  166

seq1  TGTAAATCTGTGCACCACATGCATGCTGTACCCCTGAGAAACCCTGTCTC  237
                                                        
seq2  --------------------------------------------------  166

seq1  GAAAAACCAAATAAATAAATAAATAAATAAATAAAATAAAAA  279
                                                
seq2  ------------------------------------------  166

seq1: chr2_91862451_91863092
seq2: B6Ng01-146D03.g_69_710

seq1  GAATTCTTTCCTGCACTGGAGCAAGGCCAGAAGAGCAGCTACAGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTGCACTGGAGCAAGGCCAGAAGAGCAGCTACAGAGCAGA  50

seq1  GCAGGCTGCAGCGTTCATTGAGAAGAAAGCCCAGCTCAGTCGGTCCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGCAGCGTTCATTGAGAAGAAAGCCCAGCTCAGTCGGTCCCCAG  100

seq1  CTGCACTGTCCCTGGAGCCTGGGCCCCAACAAACCTCTTTCCCTCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTCCCTGGAGCCTGGGCCCCAACAAACCTCTTTCCCTCTGAGC  150

seq1  AGAATCTTTTACCTGCTCCAAGAGGGCTATGTGGTCCCTCAGGAAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTTTACCTGCTCCAAGAGGGCTATGTGGTCCCTCAGGAAGCTGT  200

seq1  TGTTTTACTCCTGGGAAGCATCTAGAACCATCCTTAGGAAGCACTGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTCCTGGGAAGCATCTAGAACCATCCTTAGGAAGCACTGGCCC  250

seq1  GGTTTCCCTCCATTTTACAGATCAGGTAATGGAGGCCTGAGGGGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCTCCATTTTACAGATCAGGTAATGGAGGCCTGAGGGGGAAAGA  300

seq1  GAGACACGCATGGCCCAGGCTCACAAGGGAAACAGAGGCAGGATGAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACGCATGGCCCAGGCTCACAAGGGAAACAGAGGCAGGATGAGGGT  350

seq1  GTTGCCACTTCTCCTAAGACTAAGCATCTCTCCTAGTTCCTTCCATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCACTTCTCCTAAGACTAAGCATCTCTCCTAGTTCCTTCCATCTGA  400

seq1  TGTAGAAGACTAAGACTTGAACAACCTCCCTCAGACAGCAAGGCCGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGACTAAGACTTGAACAACCTCCCTCAGACAGCAAGGCCGGGAC  450

seq1  ATGCTGCTTGAGAATGCCTGGGAGATCTGTCACCCCATGACTCCCTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTTGAGAATGCCTGGGAGATCTGTCACCCCATGACTCCCTAACT  500

seq1  GATGGAGACGCGAAATCAAGCTGAGCAGGACACTCAATGACATCTAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGACGCGAAATCAAGCTGAGCAGGACACTCAATGACATCTAAGGC  550

seq1  CTTTGTCTGCTTAAGTTTTGTTAGAGCAAGAGGTAGAGACAAACAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTGCTTAAGTTTTGTTAGAGCAAGAGGTAGAGACAAACAGGTGG  600

seq1  GGAGCCATGTGTTTGGTCTCTGGTGTGTGTGGGGTGGAGGGG  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGTGTTTGGTCTCTGGTGTGTGTGGGGTGGAGGGG  642