BAC Information

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BAC

Clone NameB6Ng01-146F15
Chromosome11 (Build37)
Map Location 97,829,678 - 98,025,532
singlet/doubletdoublet
Overlap genePlxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp
Upstream geneSp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneLOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F15.bB6Ng01-146F15.g
ACCDH943518DH943519
length1,111723
definitionDH943518|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F15, 5' end.DH943519|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,829,678 - 97,830,797)(98,024,812 - 98,025,532)
sequence
gaattcaactcccaaaagcacatttgtgattgtgatccttgcacacttgt
gatggcacacacacacacacacacacacacacacacacacacacacaaat
acagtaaccaaaagaaagaaatgtttgccggtgaggtgaatggggcagag
atctgcacccaaacggttccgttaacattatctcctattttcctctcacc
tcagctgtgcacttgataaggaactctggtataatgtaccactgatggga
cctttcagaatggtgcgatccttaggagagattcacgaagttcttgaatg
attagcttgattaccacaagagcaagctgttagaaggtgagaccaacctg
tgttttctctcttctgcaaactcctgaatttaaaatatgtagcccttcac
cttcagccagtgtgctgtggtcaccgtcatgctcgccactgccctctgtg
gctatgccgcagccgcggctgcccgaggcctcctgcaccccgtctcggct
ctcagccccgccaccaccactgtctgttccatttgctgctattctcatgg
gtcacacgagacagatgaggagtttgatgcttgctgggtgacatacttca
acaaaccagacactgatgcctgggaattgcgtaaagggatgaatacactt
gttggctatgatctggtttctgagccccaaatcagtgatgctgcgtttgt
gggcatggagatggttaaatgattttgctagtgctgttcgcatcttggag
gtttgttaaggacaaagcaggacttcataaggaaatctacccctatgtca
tccaggaacttagaccaactttaaatgaactgggaatctccagtccagag
taactgggccttgacaaagtgtaaactccctttccatgggcttcccaagg
acttaactgctgttgctacttgattgaaacagttgctggaaatgttttta
tttgacaaattttcttttgagtatccaccacgttatagcacttggacttt
aataaagggaaatgagttttacctgaaaaaaaaaagccctgtggggattc
gggtcatttcactatggtgggtccgggattgactgagtaaacaccagcca
aaagcaggagg
gaattcacctcaataatgcattcataaacaagtatcttttagctaaagaa
taactagttggcattcataacatcagttgaaagaggtctgtatagctagg
taacgtttactacgtcccatactttggtattcctcctgcccactgcagga
tagtctgtggctgggcttggtacactggtgagtaaataccattcatttgc
attcctcttttgcctaggctcttccaggtcagcagcactgctattttctc
aataaagatgctcctcttcctgatggtcagagcctgcagggaacactggt
cagcaaaatcaccttccagcaccctggccgagttcctcttatcttgaata
tgatcagacaccaagtggcctataacactctaattggaagctgtgtcaaa
agaactattttaaaagaaggtactctctttccttctgatcaacttactgg
gagatgggtgctcacttctccagtggtttggttatagtttattgaaacaa
cacccagatggctttagagaccacaggtatttgattccacatccagagca
aaagaattagaattagaatgtcatcgtaaacaaaacaagcacaatgagga
atttagtttagtcaccattaattattttgagggaactaatttgttacaat
ttgtcattttatagtaaaaatcattgtcactggtgtgtgtgtgtctgtgt
gtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97829678_97830797
seq2: B6Ng01-146F15.b_50_1160

seq1  GAATTCAACTCCCAAAAGCACATTTGTGATTGTGATCCTTGCACACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCCAAAAGCACATTTGTGATTGTGATCCTTGCACACTTGT  50

seq1  GATGGCACACACACACACACACACACACACACACACACACACACACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACACACACACACACACACACACACACACACACACACACACAAAT  100

seq1  ACAGTAACCAAAAGAAAGAAATGTTTGCCGGTGAGGTGAATGGGGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACCAAAAGAAAGAAATGTTTGCCGGTGAGGTGAATGGGGCAGAG  150

seq1  ATCTGCACCCAAACGGTTCCGTTAACATTATCTCCTATTTTCCTCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCACCCAAACGGTTCCGTTAACATTATCTCCTATTTTCCTCTCACC  200

seq1  TCAGCTGTGCACTTGATAAGGAACTCTGGTATAATGTACCACTGATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGCACTTGATAAGGAACTCTGGTATAATGTACCACTGATGGGA  250

seq1  CCTTTCAGAATGGTGCGATCCTTAGGAGAGATTCACGAAGTTCTTGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGAATGGTGCGATCCTTAGGAGAGATTCACGAAGTTCTTGAATG  300

seq1  ATTAGCTTGATTACCACAAGAGCAAGCTGTTAGAAGGTGAGACCAACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTGATTACCACAAGAGCAAGCTGTTAGAAGGTGAGACCAACCTG  350

seq1  TGTTTTCTCTCTTCTGCAAACTCCTGAATTTAAAATATGTAGCCCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTCTTCTGCAAACTCCTGAATTTAAAATATGTAGCCCTTCAC  400

seq1  CTTCAGCCAGTGTGCTGTGGTCACCGTCATGCTCGCCACTGCCCTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCAGTGTGCTGTGGTCACCGTCATGCTCGCCACTGCCCTCTGTG  450

seq1  GCTATGCCGCAGCCGCGGCTGCCCGAGGCCTCCTGCACCCCGTCTCGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCGCAGCCGCGGCTGCCCGAGGCCTCCTGCACCCCGTCTCGGCT  500

seq1  CTCAGCCCCGCCACCACCACTGTCTGTTCCATTTGCTGCTATTCTCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCCGCCACCACCACTGTCTGTTCCATTTGCTGCTATTCTCATGG  550

seq1  GTCACACGAGACAGATGAGGAGTTTGATGCTTGCTGGGTGACATACTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACGAGACAGATGAGGAGTTTGATGCTTGCTGGGTGACATACTTCA  600

seq1  ACAAACCAGACACTGATGCCTGGGAATTGCGTAAAGGGATGAATACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAGACACTGATGCCTGGGAATTGCGTAAAGGGATGAATACACTT  650

seq1  GTTGGCTATGATCTGGTTTCTGAGCCCCAAATCAGTGATGCTGCG-TTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTGGCTATGATCTGGTTTCTGAGCCCCAAATCAGTGATGCTGCGTTTGT  700

seq1  GGGCATGGAGATGGTTAAATGATTTTGCTAGTGCTGTTCGCATCTTGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGAGATGGTTAAATGATTTTGCTAGTGCTGTTCGCATCTTGGAG  750

seq1  G-TTGTTAAGGACAAAGCAGGACTTCATAAGGAAATCTACCCCTATGTCA  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAAGGACAAAGCAGGACTTCATAAGGAAATCTACCCCTATGTCA  800

seq1  TCCAGGAACTTAGACCAACTTTAAATGAACTGGGAATCTCCAGTCCAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAACTTAGACCAACTTTAAATGAACTGGGAATCTCCAGTCCAGAG  850

seq1  TAACTGGGCCTTGACAAAGTGTAAACTCCC-TTCCATGGGCTTCCCAAGG  897
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAACTGGGCCTTGACAAAGTGTAAACTCCCTTTCCATGGGCTTCCCAAGG  900

seq1  ACTTAACTGCTGTTGCTACTTGATTGAAACAGTTGCCTGGAAATGTTTTT  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTTAACTGCTGTTGCTACTTGATTGAAACAGTTG-CTGGAAATGTTTTT  949

seq1  ATTTGAACAAATTTTCCTTTGAGTATCCAACCACGTAATAGCAACTTGGA  997
      ||||| |||||||||| ||||||||||| ||||||| ||||| |||||||
seq2  ATTTG-ACAAATTTTCTTTTGAGTATCC-ACCACGTTATAGC-ACTTGGA  996

seq1  CTTTAATAAAGGGAAATGAGTTTTAACTGAAAAAAAAAAAAGCCTTGT-G  1046
      ||||||||||||||||||||||||| |||  ||||||||||||| ||| |
seq2  CTTTAATAAAGGGAAATGAGTTTTACCTG--AAAAAAAAAAGCCCTGTGG  1044

seq1  GGAGTCGGTTCATTTCACTAT-GTGGGTCCTGGGGATTGAACTGAGTAAA  1095
      ||| |||| |||||||||||| ||||||||  ||||||| ||||||| ||
seq2  GGATTCGGGTCATTTCACTATGGTGGGTCC--GGGATTG-ACTGAGT-AA  1090

seq1  ACACCACAGCCAAAAGCAAGGGAGG  1120
      ||||  ||||||||||||  |||||
seq2  ACAC--CAGCCAAAAGCA--GGAGG  1111

seq1: chr11_98024812_98025532
seq2: B6Ng01-146F15.g_70_792 (reverse)

seq1  CACACACACACACACACACACACACACAGACACACACACACCAGTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAGACACACACACACCAGTGACAA  50

seq1  TGATTTTTACTAT-AAATGAC-AATTGTAACAAATTAGTTCCCTCAAAAT  98
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  TGATTTTTACTATAAAATGACAAATTGTAACAAATTAGTTCCCTCAAAAT  100

seq1  AATTAATGGTGACTAAACTAAATTCCTCATTGTGCTTGTTTTGTTTACGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGGTGACTAAACTAAATTCCTCATTGTGCTTGTTTTGTTTACGA  150

seq1  TGACATTCTAATTCTAATTCTTTTGCTCTGGATGTGGAATCAAATACCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTAATTCTAATTCTTTTGCTCTGGATGTGGAATCAAATACCTG  200

seq1  TGGTCTCTAAAGCCATCTGGGTGTTGTTTCAATAAACTATAACCAAACCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTAAAGCCATCTGGGTGTTGTTTCAATAAACTATAACCAAACCA  250

seq1  CTGGAGAAGTGAGCACCCATCTCCCAGTAAGTTGATCAGAAGGAAAGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGTGAGCACCCATCTCCCAGTAAGTTGATCAGAAGGAAAGAGA  300

seq1  GTACCTTCTTTTAAAATAGTTCTTTTGACACAGCTTCCAATTAGAGTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCTTTTAAAATAGTTCTTTTGACACAGCTTCCAATTAGAGTGTT  350

seq1  ATAGGCCACTTGGTGTCTGATCATATTCAAGATAAGAGGAACTCGGCCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCACTTGGTGTCTGATCATATTCAAGATAAGAGGAACTCGGCCAG  400

seq1  GGTGCTGGAAGGTGATTTTGCTGACCAGTGTTCCCTGCAGGCTCTGACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAAGGTGATTTTGCTGACCAGTGTTCCCTGCAGGCTCTGACCA  450

seq1  TCAGGAAGAGGAGCATCTTTATTGAGAAAATAGCAGTGCTGCTGACCTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGAGGAGCATCTTTATTGAGAAAATAGCAGTGCTGCTGACCTGG  500

seq1  AAGAGCCTAGGCAAAAGAGGAATGCAAATGAATGGTATTTACTCACCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTAGGCAAAAGAGGAATGCAAATGAATGGTATTTACTCACCAGT  550

seq1  GTACCAAGCCCAGCCACAGACTATCCTGCAGTGGGCAGGAGGAATACCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGCCCAGCCACAGACTATCCTGCAGTGGGCAGGAGGAATACCAA  600

seq1  AGTATGGGACGTAGTAAACGTTACCTAGCTATACAGACCTCTTTCAACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGACGTAGTAAACGTTACCTAGCTATACAGACCTCTTTCAACTG  650

seq1  ATGTTATGAATGCCAACTAGTTATTCTTTAGCTAAAAGATACTTGTTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGAATGCCAACTAGTTATTCTTTAGCTAAAAGATACTTGTTTAT  700

seq1  GAATGCATTATTGAGGTGAATTC  721
      |||||||||||||||||||||||
seq2  GAATGCATTATTGAGGTGAATTC  723