BAC Information

Click to search

BAC

Clone NameB6Ng01-146H19
Chromosome11 (Build37)
Map Location 64,403,933 - 64,550,832
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146H19.bB6Ng01-146H19.g
ACCDH943619DH943620
length1,0751,023
definitionDH943619|Mus musculus domesticus DNA, BAC clone: B6Ng01-146H19, 5' end.DH943620|Mus musculus domesticus DNA, BAC clone: B6Ng01-146H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,549,771 - 64,550,832)(64,403,933 - 64,404,950)
sequence
gaattcagatttttttcttttttcttctttttcctttcgtcttcctcttt
tttattctttttaattttttaatactaatgtctatgtgtttgggctggaa
attgttagatgggttttaacccccagggtctgagtagtgcctggttcttt
gttctgccttctaactagctaaatgattgttgagtgattcacattgtttt
tctcaatcttggcttaaaaaaatggccagagataccaaaccttaacttta
tacaaaagttaagggttgaacaagtatgcgctgataaaaggcagctcagg
gagcaagttacaaacaccaacttggtttgacatcatttgtgggtgatata
atttaaccccacctccatgcatatgcaaatcatagggaaaccaattaaaa
ttctcttaagtcaacaacaggtcttattgcctgttatagctgagatgccc
tggcccaatccaggcccatgaatattatacaatagccctgtctcccttca
cccattcatcctgctggcttcagctttccaaatggaaccaggagctccgg
agccaaatccattggaagaagacctaccctttttctgatctcaaagacgg
gaagcaagagaggtctgatttaaccatgaggctgggctgaatgactcagc
caatctctatcaaagtcattgtcatgctctgtcaggcctgtgtcacacat
cacttttgaagctgggtaaaacaaagggctgggtgtctagatgcatggac
tttttcatcaaaactaagagacagtaggtatctattatgactttctttgt
atacgtgtggaggccatctcttgtggggagacctttctcagatgtttacc
attttctttttggggtttttggcaggaaggaggagggagtctttcactag
cctaaaactctccaaagttaggctgatggaccatcaagccgcaataataa
tgctttattctctgcttgccaagcatgattgacacagggcacctatgagc
agcttttaaatgtgggtttgtagcttcaaactgtttgtttttgtgttttg
caaggcccagattgtttactacctg
gaattcattgcagttaggagtgtgagggactttgtttctagcttaagtct
ttggcatgataaattacatgatacccaagaaaatctgagtttccaaaaca
cagtgaataatcttttagaataagtatatcccaaatattgcatgagactt
atttatagccaaataattatccattgtttaccaggaattaaaactgaatt
gggttgtctgagttttgttcttatgctgtgtttgatcactcagctgataa
gggcctcatttgtaagtcacttgaagataccagggagaaagaaaccagag
agctgtgtttgtttgctctaacttctctgagcttcgccaaaacatatgtg
tatttatttgtatgaaaaaaatcttaagacagaacagtaaacatgagctt
cacaggagctccttgcactgtgagccctttaggaagtcgatatccctcga
tatattgatatgaagagctttggacaatcccattctcaccaggaaataaa
atgaaagagttaaggctacatttttcttctagtcaaatttcagttcaccg
agtggaggacaaattggaactctaatttgtctttatttaacctcataaat
gtgggcaggtcatagaagcactgatgaaatggtcagctgtctgactgacc
tacagagaagtcgctaggctcgttcgtgtcaatgaccatcaaggcccatg
agtatccagactctagataattttgggcttgttacaagaagactggagcc
tctggcctttaaccgatacagtgttcctaagttcaacactataaactatg
tgacaattataaactggttgtcccttaatctgaaaatctcaaattctcaa
actttaatctttttatactctgaagtgacaccagtaacggagagtccaca
tctgggcttcatgtgacaggcaattcttgggacttatgaaaatattatat
gaggtgagtatagggtataagggtatacaatgggtatcggaaacaataat
taatttcatgtttagttttgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64549771_64550832
seq2: B6Ng01-146H19.b_47_1121 (reverse)

seq1  CAGGTAGT-AACACTCT-GGCCTTGC-AAACACAAAAAC-AACAGTCTG-  45
      |||||||| |||| ||| |||||||| |||||||||||| |||||| || 
seq2  CAGGTAGTAAACAATCTGGGCCTTGCAAAACACAAAAACAAACAGTTTGA  50

seq1  AGCTACAAACCCACATTTAAAAGCTGCTCAT-GGTGCCCTGTGTC-ATCA  93
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AGCTACAAACCCACATTTAAAAGCTGCTCATAGGTGCCCTGTGTCAATCA  100

seq1  TGCTTGGCAGGCAGAGA--TAAGCA-TATTATTGCGGCTTGATGGTCCAT  140
      ||||||||| |||||||   ||||| ||||||||||||||||||||||||
seq2  TGCTTGGCAAGCAGAGAATAAAGCATTATTATTGCGGCTTGATGGTCCAT  150

seq1  CAGCCTA--CTTGGAGAGTTTTAGGCTAGTGAAAGACTCCCTCCTCCTTC  188
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAACTTTGGAGAGTTTTAGGCTAGTGAAAGACTCCCTCCTCCTTC  200

seq1  CTGCC-AAAACCCCAAAAAGAAAATGGTAAACATCTGAGAAAGGTCTCCC  237
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAAACCCCAAAAAGAAAATGGTAAACATCTGAGAAAGGTCTCCC  250

seq1  CACAAGAGATGGCCTCCACACGTATACAAAGAAAGTCATAATAGATACCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGATGGCCTCCACACGTATACAAAGAAAGTCATAATAGATACCT  300

seq1  ACTGTCTCTTAGTTTTGATGAAAAAGTCCATGCATCTAGACACCCAGCCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTTAGTTTTGATGAAAAAGTCCATGCATCTAGACACCCAGCCC  350

seq1  TTTGTTTTACCCAGCTTCAAAAGTGATGTGTGACACAGGCCTGACAGAGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTACCCAGCTTCAAAAGTGATGTGTGACACAGGCCTGACAGAGC  400

seq1  ATGACAATGACTTTGATAGAGATTGGCTGAGTCATTCAGCCCAGCCTCAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGACTTTGATAGAGATTGGCTGAGTCATTCAGCCCAGCCTCAT  450

seq1  GGTTAAATCAGACCTCTCTTGCTTCCCGTCTTTGAGATCAGAAAAAGGGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATCAGACCTCTCTTGCTTCCCGTCTTTGAGATCAGAAAAAGGGT  500

seq1  AGGTCTTCTTCCAATGGATTTGGCTCCGGAGCTCCTGGTTCCATTTGGAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCTTCCAATGGATTTGGCTCCGGAGCTCCTGGTTCCATTTGGAA  550

seq1  AGCTGAAGCCAGCAGGATGAATGGGTGAAGGGAGACAGGGCTATTGTATA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGCCAGCAGGATGAATGGGTGAAGGGAGACAGGGCTATTGTATA  600

seq1  ATATTCATGGGCCTGGATTGGGCCAGGGCATCTCAGCTATAACAGGCAAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATGGGCCTGGATTGGGCCAGGGCATCTCAGCTATAACAGGCAAT  650

seq1  AAGACCTGTTGTTGACTTAAGAGAATTTTAATTGGTTTCCCTATGATTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGTTGTTGACTTAAGAGAATTTTAATTGGTTTCCCTATGATTTG  700

seq1  CATATGCATGGAGGTGGGGTTAAATTATATCACCCACAAATGATGTCAAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCATGGAGGTGGGGTTAAATTATATCACCCACAAATGATGTCAAA  750

seq1  CCAAGTTGGTGTTTGTAACTTGCTCCCTGAGCTGCCTTTTATCAGCGCAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGGTGTTTGTAACTTGCTCCCTGAGCTGCCTTTTATCAGCGCAT  800

seq1  ACTTGTTCAACCCTTAACTTTTGTATAAAGTTAAGGTTTGGTATCTCTGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCAACCCTTAACTTTTGTATAAAGTTAAGGTTTGGTATCTCTGG  850

seq1  CCATTTTTTTAAGCCAAGATTGAGAAAAACAATGTGAATCACTCAACAAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTTAAGCCAAGATTGAGAAAAACAATGTGAATCACTCAACAAT  900

seq1  CATTTAGCTAGTTAGAAGGCAGAACAAAGAACCAGGCACTACTCAGACCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCTAGTTAGAAGGCAGAACAAAGAACCAGGCACTACTCAGACCC  950

seq1  TGGGGGTTAAAACCCATCTAACAATTTCCAGCCCAAACACATAGACATTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTAAAACCCATCTAACAATTTCCAGCCCAAACACATAGACATTA  1000

seq1  GTATTAAAAAATTAAAAAGAATAAAAAAGAGGAAGACGAAAGGAAAAAGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAAAATTAAAAAGAATAAAAAAGAGGAAGACGAAAGGAAAAAGA  1050

seq1  AGAAAAAAGAAAAAAATCTGAATTC  1062
      |||||||||||||||||||||||||
seq2  AGAAAAAAGAAAAAAATCTGAATTC  1075

seq1: chr11_64403933_64404950
seq2: B6Ng01-146H19.g_66_1088

seq1  GAATTCATTGCAGTTAGGAGTGTGAGGGACTTTGTTTCTAGCTTAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAGTTAGGAGTGTGAGGGACTTTGTTTCTAGCTTAAGTCT  50

seq1  TTGGCATGATAAATTACATGATACCCAAGAAAATCTGAGTTTCCAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGATAAATTACATGATACCCAAGAAAATCTGAGTTTCCAAAACA  100

seq1  CAGTGAATAATCTTTTAGAATAAGTATATCCCAAATATTGCATGAGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATAATCTTTTAGAATAAGTATATCCCAAATATTGCATGAGACTT  150

seq1  ATTTATAGCCAAATAATTATCCATTGTTTACCAGGAATTAAAACTGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGCCAAATAATTATCCATTGTTTACCAGGAATTAAAACTGAATT  200

seq1  GGGTTGTCTGAGTTTTGTTCTTATGCTGTGTTTGATCACTCAGCTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTCTGAGTTTTGTTCTTATGCTGTGTTTGATCACTCAGCTGATAA  250

seq1  GGGCCTCATTTGTAAGTCACTTGAAGATACCAGGGAGAAAGAAACCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCATTTGTAAGTCACTTGAAGATACCAGGGAGAAAGAAACCAGAG  300

seq1  AGCTGTGTTTGTTTGCTCTAACTTCTCTGAGCTTCGCCAAAACATATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTTGTTTGCTCTAACTTCTCTGAGCTTCGCCAAAACATATGTG  350

seq1  TATTTATTTGTATGAAAAAAATCTTAAGACAGAACAGTAAACATGAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTATGAAAAAAATCTTAAGACAGAACAGTAAACATGAGCTT  400

seq1  CACAGGAGCTCCTTGCACTGTGAGCCCTTTAGGAAGTCGATATCCCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCTCCTTGCACTGTGAGCCCTTTAGGAAGTCGATATCCCTCGA  450

seq1  TATATTGATATGAAGAGCTTTGGACAATCCCATTCTCACCAGGAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATATGAAGAGCTTTGGACAATCCCATTCTCACCAGGAAATAAA  500

seq1  ATGAAAGAGTTAAGGCTACATTTTTCTTCTAGTCAAATTTCAGTTCACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGTTAAGGCTACATTTTTCTTCTAGTCAAATTTCAGTTCACCG  550

seq1  AGTGGAGGACAAATTGGAACTCTAATTTGTCTTTATTTAACCTCATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGACAAATTGGAACTCTAATTTGTCTTTATTTAACCTCATAAAT  600

seq1  GTGGGCAGGTCATAGAAGCACTGATGAAATGGTCAGCTGTCTGACTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGGTCATAGAAGCACTGATGAAATGGTCAGCTGTCTGACTGACC  650

seq1  TACAGAGAAGTCGCTAGGCTCGTTCGTGTCAATGACCATCAAGGCCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAGTCGCTAGGCTCGTTCGTGTCAATGACCATCAAGGCCCATG  700

seq1  AGTATCCAGACTCTAGATAA-TTTGGGCTTGTTACAAGAAGACTGGAGCC  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTATCCAGACTCTAGATAATTTTGGGCTTGTTACAAGAAGACTGGAGCC  750

seq1  TCTGGCC-TTAACCGATACAGTGTTCCTAAG-TCAACACAATAAACTATG  797
      ||||||| ||||||||||||||||||||||| ||||||| ||||||||||
seq2  TCTGGCCTTTAACCGATACAGTGTTCCTAAGTTCAACACTATAAACTATG  800

seq1  TGACAATTATAAACTGGTTGTCCC-TAATCTGAAAATCTCAAATTCTCAA  846
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACAATTATAAACTGGTTGTCCCTTAATCTGAAAATCTCAAATTCTCAA  850

seq1  ACTTTAATC-TTTTATACTCTGAAGTGACACCAGTAACGGAGAAGTCCAC  895
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  ACTTTAATCTTTTTATACTCTGAAGTGACACCAGTAACGGAG-AGTCCAC  899

seq1  ATCT-GGCTTCATGTGACAGGCAATTCTTGGGACTTATGAAAATACTATA  944
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTGGGCTTCATGTGACAGGCAATTCTTGGGACTTATGAAAATATTATA  949

seq1  TGAGGTGAGTATAGGGTAT-AGGGTATAGCAATGGGTATAGGAAACAAAA  993
      ||||||||||||||||||| |||||||| |||||||||| |||||||| |
seq2  TGAGGTGAGTATAGGGTATAAGGGTATA-CAATGGGTATCGGAAACAATA  998

seq1  ATAAATTTCATGTTTAGATTTGGGT  1018
      || |||||||||||||| |||||||
seq2  ATTAATTTCATGTTTAGTTTTGGGT  1023