BAC Information

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BAC

Clone NameB6Ng01-147G23
Chromosome11 (Build37)15 (Build37)
Map Location 60,247,294 - 60,247,68575,927,403 - 75,928,197
singlet/doubletsingletsinglet
Overlap gene4933439F18Rik
Upstream gene1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2
Downstream geneLOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147G23.bB6Ng01-147G23.g
ACCDH944318DH944319
length982795
definitionDH944318|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G23, 5' end.DH944319|Mus musculus domesticus DNA, BAC clone: B6Ng01-147G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,247,294 - 60,247,685)(75,927,403 - 75,928,197)
sequence
gaattccagggccacacagagaaaccctgtctcggaaaaaaaaaaaaaaa
caaaaaaaaaaaaacaagaaaacaaagcaaagaagcaatcaaaactgtag
gagctggagagacagctcagaggctaagaacatttgttgctcttgctgaa
gacatgggttcagttcttcagtcacatgacagttcacaagcatccgtaat
tccagttccagggaacctaatgcctgcttctgaactctgcaggcaccgga
catgtgtgtggtatacaaccatgcaggcaaaacacagacattaacaatat
tttttagcatatcttattttcaatttttattgtatgttatgcatatgagt
gttttgcctgcatgtatgtctgtgcaccatgtgatatggtgccagaagag
agcatcacatgggtcctgggaattgaatccatgacctctcaaagaccagc
cagtgctttttgactccagagccatctctccagcccctaaaaacaaaaac
aaacaaacaaacaaaaaccctcttatctttttaaagtaaaataaaacaaa
gctgtggtgagcctggagaggtgactcagtggtctggagagcctgcttca
ctctcaagagtactagagtttgccaaatacctgccctgttaggcccttca
cagctgcctgtcacgccaactccaggaagccgccgatgcccacttgtggc
ccctgagtgtacctacacatacacacatccagaaattaaaacgacaaaaa
tcttaaagaggggaaagcaaagtaaacagacaggtaaaaccaaacccctt
acaagccagtgtggtagactaagggtgtggctcagctggcgcagggcttc
caagcattccgagagccctgggttcagttcccagccgtgaacagcagggt
acggtggcacagcatcccagccgtgaggatgctgtgaggtatcctcagct
ccatactgagatcatgataccctgaggtacat
gaattccagaccttattttctgaagaccagccagtgggcgtgtatgtctg
agagtggagttggcacacctatctgtacttcctggatcctgagattatta
gtgtgagctgccacatccagtcttcaggaccttcaaaacagatgtctgag
gggtctgcactttttgcatctttgctgatcccaaggcaatcctgtatcga
agaaggcccagctccttctgtgtctacaacagttaaatgtgccaatgtgc
cagatccctgggcaacgcaggaattaggtgctttctgcccatccagcgtc
tcaggcctggtgtgggagggaagtcacccatgtgttttgctgtgaagtca
catgtgttcccactgtgggctcccaccccagcctccacacaagaaaacct
gcaggggctcgctcagctgggtaacatacacctctctcactcttgttgcc
cccactctgctctgcgttgggtggctccctgcccttttgggtttgtcaag
caactcctcctgagcctggctagtcaaggacaccaggcaaactgagtgag
ggaaagaggtcaagcactggagtgccctgccacaatctgtccttcatgtc
accaggaaaaaggaacgactcgtatgttggcagctggacaagaagtcatg
tctgacctgtaggaaataaagcagccagaacctggttaatacctggcatt
cagcctttagtgttttctgtgaggtctccccgccccctagccccaacacc
ccctgctgtgtgtgtgtgtgtgagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60247294_60247685
seq2: B6Ng01-147G23.b_46_440 (reverse)

seq1  CTCTTCTGGCCTCCTTGACACACATGGTGCACAGACATACATGCAGGTAA  50
      ||||||||||  | |     ||||||||||||||||||||||||||| ||
seq2  CTCTTCTGGCACCAT---ATCACATGGTGCACAGACATACATGCAGGCAA  47

seq1  AACACCTATA-----CACATAAAAGAAAACTTAAAAACAATATTGCCAGG  95
      |||||  |||      ||||| || |||| || |||| || ||       
seq2  AACACTCATATGCATAACATACAATAAAAATTGAAAATAAGAT-------  90

seq1  AGTGATGACATAAGCTTTTAATCTC----AACAACCAG--AGGCAGAAGC  139
        || | | | |   | ||||| ||         || |   ||  | |  
seq2  -ATGCTAAAAAATATTGTTAATGTCTGTGTTTTGCCTGCATGGTTGTA--  137

seq1  TGGCAGATAAATGTGAGTTTGAGGCCAGTCTGGTCTACATAGTGAGTTCC  189
      |  || | | ||||          || ||   | || ||    ||||| |
seq2  TACCACACACATGT----------CCGGT---GCCTGCA----GAGTT-C  169

seq1  AGACCAGAGAGGGCTATTCTATAAGACCTTG-CCTTTAAAAAAGAAAGTT  238
      |||    ||  ||| ||  ||     ||| |  ||  ||  | | | | |
seq2  AGA----AGCAGGC-AT--TAGGTTCCCTGGAACTGGAATTACGGATGCT  212

seq1  CCAGGACAGCCAGGGCTATACAGA---GAAACCCTGCCT---CGAAGGG-  281
         | || | || |    |  |||   ||| || || ||     ||| | 
seq2  TGTGAACTGTCATGTGACTGAAGAACTGAACCCATGTCTTCAGCAAGAGC  262

seq1  ------GGGGGGGGGGGGGGGAGTGTGTCTCTACTCGGCT-CTACA----  320
             |      |     |||  |||||||   | ||| |||||    
seq2  AACAAATGTTCTTAGCCTCTGAG-CTGTCTCT--CCAGCTCCTACAGTTT  309

seq1  ----AGCTGGTT---TTTGT-------TTTTTTTTGTTTTTTTTTTTTTT  356
           |||  ||   |||||       |||||||| |||| |||||||||
seq2  TGATTGCTTCTTTGCTTTGTTTTCTTGTTTTTTTTTTTTTGTTTTTTTTT  359

seq1  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGG  392
        |||| ||||||||||||||||||| | |||||||
seq2  TTTTTTCCGAGACAGGGTTTCTCTGTGTGGCCCTGG  395

seq1: chr15_75927403_75928197
seq2: B6Ng01-147G23.g_69_863

seq1  GAATTCCAGACCTTATTTTCTGAAGACCAGCCAGTGGGCGTGTATGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCTTATTTTCTGAAGACCAGCCAGTGGGCGTGTATGTCTG  50

seq1  AGAGTGGAGTTGGCACACCTATCTGTACTTCCTGGATCCTGAGATTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGTTGGCACACCTATCTGTACTTCCTGGATCCTGAGATTATTA  100

seq1  GTGTGAGCTGCCACATCCAGTCTTCAGGACCTTCAAAACAGATGTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCTGCCACATCCAGTCTTCAGGACCTTCAAAACAGATGTCTGAG  150

seq1  GGGTCTGCACTTTTTGCATCTTTGCTGATCCCAAGGCAATCCTGTATCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGCACTTTTTGCATCTTTGCTGATCCCAAGGCAATCCTGTATCGA  200

seq1  AGAAGGCCCAGCTCCTTCTGTGTCTACAACAGTTAAATGTGCCAATGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCCAGCTCCTTCTGTGTCTACAACAGTTAAATGTGCCAATGTGC  250

seq1  CAGATCCCTGGGCAACGCAGGAATTAGGTGCTTTCTGCCCATCCAGCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTGGGCAACGCAGGAATTAGGTGCTTTCTGCCCATCCAGCGTC  300

seq1  TCAGGCCTGGTGTGGGAGGGAAGTCACCCATGTGTTTTGCTGTGAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGGTGTGGGAGGGAAGTCACCCATGTGTTTTGCTGTGAAGTCA  350

seq1  CATGTGTTCCCACTGTGGGCTCCCACCCCAGCCTCCACACAAGAAAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCCCACTGTGGGCTCCCACCCCAGCCTCCACACAAGAAAACCT  400

seq1  GCAGGGGCTCGCTCAGCTGGGTAACATACACCTCTCTCACTCTTGTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCTCGCTCAGCTGGGTAACATACACCTCTCTCACTCTTGTTGCC  450

seq1  CCCACTCTGCTCTGCGTTGGGTGGCTCCCTGCCCTTTTGGGTTTGTCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTGCTCTGCGTTGGGTGGCTCCCTGCCCTTTTGGGTTTGTCAAG  500

seq1  CAACTCCTCCTGAGCCTGGCTAGTCAAGGACACCAGGCAAACTGAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTCCTGAGCCTGGCTAGTCAAGGACACCAGGCAAACTGAGTGAG  550

seq1  GGAAAGAGGTCAAGCACTGGAGTGCCCTGCCACAATCTGTCCTTCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGGTCAAGCACTGGAGTGCCCTGCCACAATCTGTCCTTCATGTC  600

seq1  ACCAGGAAAAAGGAACGACTCGTATGTTGGCAGCTGGACAAGAAGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAAAAGGAACGACTCGTATGTTGGCAGCTGGACAAGAAGTCATG  650

seq1  TCTGACCTGTAGGAAATAAAGCAGCCAGAACCTGGTTAATACCTGGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGTAGGAAATAAAGCAGCCAGAACCTGGTTAATACCTGGCATT  700

seq1  CAGCCTTTAGTGTTTTCTGTGAGGTCTCCCCGCCCCCTAGCCCCAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTAGTGTTTTCTGTGAGGTCTCCCCGCCCCCTAGCCCCAACACC  750

seq1  CCCTGCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGA  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGA  795