BAC Information

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BAC

Clone NameB6Ng01-147L08
Chromosome11 (Build37)9 (Build37)
Map Location 104,171,363 - 104,172,000117,006,973 - 117,007,038
singlet/doubletsingletsinglet
Overlap geneMapt
Upstream geneArhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik
Downstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147L08.bB6Ng01-147L08.g
ACCDH944510DH944511
length63896
definitionDH944510|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L08, 5' end.DH944511|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,171,363 - 104,172,000)(117,006,973 - 117,007,038)
sequence
gaattcagttgcttcctaagaaatagccgtcattgtatcaaagtgacaga
gcaggagtgatgcttctctgcaaatagtcttcatggtcttctcccagagc
cccctctggatcctggcagtgggctcccagtccagtggcctcagggactt
tgcagacgtcgcccccaccccgcgcgccccccacgtggcctcagtccctt
cctctctcccgactttccaggtgaaccaccaaaatccggagaacgaagcg
gctacagcagccccggctctcccggaacgcctggcagtcgctcgcgcacc
ccatccctaccaacaccgcccacccgggagcccaagaaggtggcagtggt
ccgcactccccctaagtcaccatcagctagtaagagccgcctgcagactg
cccctgtgcccatgccagacctaaagaatgtcaggtcgaagattggctct
actgagaacctgaagcaccagccaggaggtggcaaggtaagggtgtggct
ggtcttctgggaagccagactcccacctagccagacttgctcccccccac
cctgcccccacacccctccaaccccggaagcacacgggccaccaaggcac
tggctcctcccttcccctctttagccttgctaattggg
caacccaatcagagctacatagtgagaccctggatggatggatagataga
tagatagatagatagatagatagatagatagatagatagatagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104171363_104172000
seq2: B6Ng01-147L08.b_42_679

seq1  GAATTCAGTTGCTTCCTAAGAAATAGCTGTCATTGTATCAAAGTGACAGA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCAGTTGCTTCCTAAGAAATAGCCGTCATTGTATCAAAGTGACAGA  50

seq1  GCAGGAGTGATGCTTCTCTGCAAATAGTCTTCATGGTCTTCTCCCAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTGATGCTTCTCTGCAAATAGTCTTCATGGTCTTCTCCCAGAGC  100

seq1  CCCCTCTGGATCCTGGCAGTGGGCTCCCAGTCCAGTGGCCTCAGGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGGATCCTGGCAGTGGGCTCCCAGTCCAGTGGCCTCAGGGACTT  150

seq1  TGCAGACGTCGCCCCCACCCCGCGCGCCCCCCACGTGGCCTCAGTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACGTCGCCCCCACCCCGCGCGCCCCCCACGTGGCCTCAGTCCCTT  200

seq1  CCTCTCTCCCGACTTTCCAGGTGAACCACCAAAATCCGGAGAACGAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCCGACTTTCCAGGTGAACCACCAAAATCCGGAGAACGAAGCG  250

seq1  GCTACAGCAGCCCCGGCTCTCCCGGAACGCCTGGCAGTCGCTCGCGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCAGCCCCGGCTCTCCCGGAACGCCTGGCAGTCGCTCGCGCACC  300

seq1  CCATCCCTACCAACACCGCCCACCCGGGAGCCCAAGAAGGTGGCAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTACCAACACCGCCCACCCGGGAGCCCAAGAAGGTGGCAGTGGT  350

seq1  CCGCACTCCCCCTAAGTCACCATCAGCTAGTAAGAGCCGCCTGCAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTCCCCCTAAGTCACCATCAGCTAGTAAGAGCCGCCTGCAGACTG  400

seq1  CCCCTGTGCCCATGCCAGACCTAAAGAATGTCAGGTCGAAGATTGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGCCCATGCCAGACCTAAAGAATGTCAGGTCGAAGATTGGCTCT  450

seq1  ACTGAGAACCTGAAGCACCAGCCAGGAGGTGGCAAGGTAAGGGTGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAACCTGAAGCACCAGCCAGGAGGTGGCAAGGTAAGGGTGTGGCT  500

seq1  GGTCTTCTGGGAAGCCAGACTCCCACCTAGCCAGACTTGCTCCCCCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGGGAAGCCAGACTCCCACCTAGCCAGACTTGCTCCCCCCCAC  550

seq1  CCTGCCCCCACACCCCTCCAACCCCGGAAGCACACGGGCCACCAAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCCACACCCCTCCAACCCCGGAAGCACACGGGCCACCAAGGCAC  600

seq1  TGGCTCCTCCCTTCCCCTCTTTAGCCTTGCTAATTGGG  638
      ||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTCCCTTCCCCTCTTTAGCCTTGCTAATTGGG  638

seq1: chr9_117006973_117007038
seq2: B6Ng01-147L08.g_107_172 (reverse)

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50

seq1  TCTATCCATCCATCCA  66
      ||||||||||||||||
seq2  TCTATCCATCCATCCA  66