BAC Information

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BAC

Clone NameB6Ng01-147P10
Chromosome11 (Build37)
Map Location 115,798,056 - 115,940,002
singlet/doubletdoublet
Overlap geneSap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2
Upstream geneCd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik
Downstream geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147P10.bB6Ng01-147P10.g
ACCDH944696DH944697
length836114
definitionDH944696|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P10, 5' end.DH944697|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,939,166 - 115,940,002)(115,798,056 - 115,798,169)
sequence
gaattcctatttatttgacacaaaatgtccagttaatatattaatgtgaa
ataaaccctgtttgcaccttgatttgtttgctacaactgtgaaatagtaa
aaacgaagtgactggaggttctctgactcttgtgtggtgaccagggtgag
gtcttccggaggaggggctgcgggctgctgggggcggggctagaaggccg
gtttccgtctcagtgcgagtggttggttctcaaccttcccacagagcccc
cacgcccctgcacctgcctgggatggtgtctgtgccacccactgccagcg
ggggccaggacgaggcctgtgtcccatctgctcctcccgctcccctcctg
agcacaggcgtgccaggacttctacgagggagggtcgctgggctggctac
cacagtgtgtgccttcatgccaccttacccaggaaagaagacggtggaat
atggcagtccttaagccggacctgcaccccactcacagtgagccagagag
ctgtgggagatcccagatcaaaatgctcccacgcacagagactgctccga
ggcctcatctcctctcctccccatctctggctaacacaaagtagttctgt
cccttgcctggaatgtcacctgtggggtggagcaggctgagcaattggct
gaggaacgcctcttgcctctagcctctctggagccaccgccctgagcctg
ccccaccctgccccagatctggggcccattcagaaaaccttagggtgaga
acaccacagtctcccgtgggcgggtgggttccccggtccaggcatagttg
aagcatgcagcggccttagcctggccttacccgttg
ttcatgcctttatcccacccatcagtgataatgcagagttgagtaaaatt
gctaaaaaaacttgtggaaactggagtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115939166_115940002
seq2: B6Ng01-147P10.b_44_879 (reverse)

seq1  CAACGGGTAAGGCCAGGCTAAGGCCGCTGCCTGCTTCAACTATGCCTGGA  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAACGGGTAAGGCCAGGCTAAGGCCGCTGCATGCTTCAACTATGCCTGGA  50

seq1  CCGGGGAACCCACCCGCCCACCGGAGACCTGTGGTGTTCTCACCCTAAGG  100
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  CCGGGGAACCCACCCGCCCACGGGAGA-CTGTGGTGTTCTCACCCTAAGG  99

seq1  TTTTCTGAATGGGCCCCAGATCTGGGGCAGGGTGGGGCAGGCTCAGGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAATGGGCCCCAGATCTGGGGCAGGGTGGGGCAGGCTCAGGGCG  149

seq1  GTGGCTCCAGAGAGGCTAGAGGCAAGAGGCGTTCCTCAGCCAATTGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCAGAGAGGCTAGAGGCAAGAGGCGTTCCTCAGCCAATTGCTCA  199

seq1  GCCTGCTCCACCCCACAGGTGACATTCCAGGCAAGGGACAGAACTACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCCACCCCACAGGTGACATTCCAGGCAAGGGACAGAACTACTTT  249

seq1  GTGTTAGCCAGAGATGGGGAGGAGAGGAGATGAGGCCTCGGAGCAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGCCAGAGATGGGGAGGAGAGGAGATGAGGCCTCGGAGCAGTCTC  299

seq1  TGTGCGTGGGAGCATTTTGATCTGGGATCTCCCACAGCTCTCTGGCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGGGAGCATTTTGATCTGGGATCTCCCACAGCTCTCTGGCTCAC  349

seq1  TGTGAGTGGGGTGCAGGTCCGGCTTAAGGACTGCCATATTCCACCGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGGGGTGCAGGTCCGGCTTAAGGACTGCCATATTCCACCGTCTT  399

seq1  CTTTCCTGGGTAAGGTGGCATGAAGGCACACACTGTGGTAGCCAGCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGGTAAGGTGGCATGAAGGCACACACTGTGGTAGCCAGCCCAG  449

seq1  CGACCCTCCCTCGTAGAAGTCCTGGCACGCCTGTGCTCAGGAGGGGAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCTCCCTCGTAGAAGTCCTGGCACGCCTGTGCTCAGGAGGGGAGCG  499

seq1  GGAGGAGCAGATGGGACACAGGCCTCGTCCTGGCCCCCGCTGGCAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCAGATGGGACACAGGCCTCGTCCTGGCCCCCGCTGGCAGTGGG  549

seq1  TGGCACAGACACCATCCCAGGCAGGTGCAGGGGCGTGGGGGCTCTGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGACACCATCCCAGGCAGGTGCAGGGGCGTGGGGGCTCTGTGGG  599

seq1  AAGGTTGAGAACCAACCACTCGCACTGAGACGGAAACCGGCCTTCTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGAGAACCAACCACTCGCACTGAGACGGAAACCGGCCTTCTAGCC  649

seq1  CCGCCCCCAGCAGCCCGCAGCCCCTCCTCCGGAAGACCTCACCCTGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCCAGCAGCCCGCAGCCCCTCCTCCGGAAGACCTCACCCTGGTCA  699

seq1  CCACACAAGAGTCAGAGAACCTCCAGTCACTTCGTTTTTACTATTTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAGAGTCAGAGAACCTCCAGTCACTTCGTTTTTACTATTTCACA  749

seq1  GTTGTAGCAAACAAATCAAGGTGCAAACAGGGTTTATTTCACATTAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGCAAACAAATCAAGGTGCAAACAGGGTTTATTTCACATTAATAT  799

seq1  ATTAACTGGACATTTTGTGTCAAATAAATAGGAATTC  837
      |||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGGACATTTTGTGTCAAATAAATAGGAATTC  836

seq1: chr11_115798056_115798169
seq2: B6Ng01-147P10.g_76_189

seq1  TTCATGCCTTTATCCCACCCATCAGTGATAATGCAGAGTTGAGTAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCTTTATCCCACCCATCAGTGATAATGCAGAGTTGAGTAAAATT  50

seq1  GCTAAAAAAACTTGTGGAAACTGGAGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAAACTTGTGGAAACTGGAGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTG  114
      ||||||||||||||
seq2  TGTGTGTGTGTGTG  114