BAC Information

Click to search

BAC

Clone NameB6Ng01-148K18
Chromosome11 (Build37)
Map Location 104,146,836 - 104,337,459
singlet/doubletdoublet
Overlap geneMapt, 1700081L11Rik
Upstream geneArhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148K18.bB6Ng01-148K18.g
ACCDH945213DH945214
length827766
definitionDH945213|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K18, 5' end.DH945214|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,336,636 - 104,337,459)(104,146,836 - 104,147,593)
sequence
gaattcaggacttctgcttgctctagtcggctccgcttgctctggcccaa
agatttctttattattataaataagtacactgttgctgtcttcagacaca
ccagaagagggtgtcagatctcattacgggtggttgtaagccaccatgtg
gttgctgggatttgaactcaggaccttcagaagagcagtcagtgctctta
actgttgagccatctctccagccccctatacaagtttttatacacaccac
aggtatgcaggtccccgcacgcaggctagaggaactggaattatggatat
ttgtgagccatctggtgtgagtgctggcaactgaaatctgcccctttgca
agaacaataaattcgtttaactgctcatccagctttcaagcccaagatag
tgcagatttctaaagagaggactaataaaatttacacacacatacacaac
acaaaacagagaaaagtcgtgctgcactctgttagaacttcatgttctgt
agctctgctggtttgtatggaaagcgtgtctcgcatgcagggctggcatc
tcagtcccacaggtaacataccttacagacaccgtcaaactcctatccat
tacagatctttcgaattctgtttccccatggactagaccaccacaagtct
gtatggaaggatgacactaactgtcctatacctctgctaattctttcttc
actggcccatcagatttagcattttaagggcattggttgctttttgcaga
tggcccgggttcaactctctgcgctcacacgacagctcataatattttgt
tgtttcagggaacctgaggctctcttc
gaattctgttttcaaggacagcagatggaatgggccccagctgggactcc
tctttgccaggacagtagatgttcagcctgaacctgaggggtgggtgtgt
tagttagagttttatttctgtgaagagacaccatgaccacagcaactctt
ataaaagaaagcatttaactaggattgacagttcagaggtttttagtcca
ttgttatcatggcaggaaacaaggtggcacgcaggtagacgtggtgatgg
agaggtagctgagatttctacatctggatcagaaagtagaaaaaaatgac
agtgacacactggccaggccacaaagcacaccccacaatgacacacttcc
tccaacaaagccacacttactccaacaaggccacacctcctaattatgcc
actcccaatggggccatttttattcaaaccaccacaaggggtattaaagt
gttatggagcatggggtgatactggacttaaccccatggccagagcattt
tgttcctctgttacaaatgggcagctggctcttagagcctctggagagtc
ccagccaacatctgcacccataacaaagaataaagaaaaaagaaccacat
gtattcctattgatacacagagctaccctaaaaaactcttcaaccatgat
gtcttatttaagggtttccttagttgtgaagagataccaatgaccaaggc
aactcttaagacagcaattaaattggggctggcttacagggttctgaggt
aattgggggctgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104336636_104337459
seq2: B6Ng01-148K18.b_44_870 (reverse)

seq1  GAAGAGAGCCTCAGGTTCCCTGAAACAAACAAAATATTATGAGCTGTCGT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGAGAGCCTCAGGTTCCCTGAAAC-AACAAAATATTATGAGCTGTCGT  49

seq1  GTGAGCGCAGAGAGTTGAACCCGGACCATCTGC-AAAAGCAACCAATGCC  99
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  GTGAGCGCAGAGAGTTGAACCCGGGCCATCTGCAAAAAGCAACCAATGCC  99

seq1  CTT-AAATGCTAAATCTGATGGGCCAGTGAAGAAAGAATTAGCAGAGGTA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGCTAAATCTGATGGGCCAGTGAAGAAAGAATTAGCAGAGGTA  149

seq1  TAGGACAGTTAGTGTCATCCTTCCATACAGACTTGTGGTGGTCTAGTCCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTTAGTGTCATCCTTCCATACAGACTTGTGGTGGTCTAGTCCA  199

seq1  TGGG--AACAGAATTCGAAAGATCTGTAATGGATAGGAGTTTGACGGTGT  246
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAACAGAATTCGAAAGATCTGTAATGGATAGGAGTTTGACGGTGT  249

seq1  CTGTAAGGTATGTTACCTGTGGGACTGAGATGCCAGCCCTGCATGCGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGTATGTTACCTGTGGGACTGAGATGCCAGCCCTGCATGCGAGA  299

seq1  CACGCTTTCCATACAAACCAGCAGAGCTACAGAACATGAAGTTCTAACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTTCCATACAAACCAGCAGAGCTACAGAACATGAAGTTCTAACAG  349

seq1  AGTGCAGCACGACTTTTCTCTGTTTTGTGTTGTGTATGTGTGTGTAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCACGACTTTTCTCTGTTTTGTGTTGTGTATGTGTGTGTAAATT  399

seq1  TTATTAGTCCTCTCTTTAGAAATCTGCACTATCTTGGGCTTGAAAGCTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTCCTCTCTTTAGAAATCTGCACTATCTTGGGCTTGAAAGCTGG  449

seq1  ATGAGCAGTTAAACGAATTTATTGTTCTTGCAAAGGGGCAGATTTCAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGTTAAACGAATTTATTGTTCTTGCAAAGGGGCAGATTTCAGTT  499

seq1  GCCAGCACTCACACCAGATGGCTCACAAATATCCATAATTCCAGTTCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACTCACACCAGATGGCTCACAAATATCCATAATTCCAGTTCCTC  549

seq1  TAGCCTGCGTGCGGGGACCTGCATACCTGTGGTGTGTATAAAAACTTGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCGTGCGGGGACCTGCATACCTGTGGTGTGTATAAAAACTTGTA  599

seq1  TAGGGGGCTGGAGAGATGGCTCAACAGTTAAGAGCACTGACTGCTCTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGCTGGAGAGATGGCTCAACAGTTAAGAGCACTGACTGCTCTTCT  649

seq1  GAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCACC  699

seq1  CGTAATGAGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATGAGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGT  749

seq1  GTACTTATTTATAATAATAAAGAAATCTTTGGGCCAGAGCAAGCGGAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATTTATAATAATAAAGAAATCTTTGGGCCAGAGCAAGCGGAGCC  799

seq1  GACTAGAGCAAGCAGAAGTCCTGAATTC  824
      ||||||||||||||||||||||||||||
seq2  GACTAGAGCAAGCAGAAGTCCTGAATTC  827

seq1: chr11_104146836_104147593
seq2: B6Ng01-148K18.g_68_833

seq1  GAATTCTGTTTTCAAGGACAGCAGATGGAATGGGCCCCAGCTGGGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCAAGGACAGCAGATGGAATGGGCCCCAGCTGGGACTCC  50

seq1  TCTTTGCCAGGACAGTAGATGTTCAGCCTGAACCTGAGGGGTGGGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCAGGACAGTAGATGTTCAGCCTGAACCTGAGGGGTGGGTGTGT  100

seq1  TAGTTAGAGTTTTATTTCTGTGAAGAGACACCATGACCACAGCAACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGAGTTTTATTTCTGTGAAGAGACACCATGACCACAGCAACTCTT  150

seq1  ATAAAAGAAAGCATTTAACTAGGATTGACAGTTCAGAGGTTTTTAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAGCATTTAACTAGGATTGACAGTTCAGAGGTTTTTAGTCCA  200

seq1  TTGTTATCATGGCAGGAAACAAGGTGGCACGCAGGTAGACGTGGTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCATGGCAGGAAACAAGGTGGCACGCAGGTAGACGTGGTGATGG  250

seq1  AGAGGTAGCTGAGATTTCTACATCTGGATCAGAAAGTAGAAAAAAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGCTGAGATTTCTACATCTGGATCAGAAAGTAGAAAAAAATGAC  300

seq1  AGTGACACACTGGCCAGGCCACAAAGCACACCCCACAATGACACACTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACACTGGCCAGGCCACAAAGCACACCCCACAATGACACACTTCC  350

seq1  TCCAACAAAGCCACACTTACTCCAACAAGGCCACACCTCCTAATTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAAGCCACACTTACTCCAACAAGGCCACACCTCCTAATTATGCC  400

seq1  ACTCCCAATGGGGCCATTTTTATTCAAACCACCACAAGGGGTATTAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAATGGGGCCATTTTTATTCAAACCACCACAAGGGGTATTAAAGT  450

seq1  GTTATGGAGCATGGGGTGATACTGGACTTAACCCCATGGCCAGAGCA-TT  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTATGGAGCATGGGGTGATACTGGACTTAACCCCATGGCCAGAGCATTT  500

seq1  TGTTCCTCTGTTAC-AATGGGCAGCTGGCTCTTAGAGCCTCTGGAGAGTC  548
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTGTTACAAATGGGCAGCTGGCTCTTAGAGCCTCTGGAGAGTC  550

seq1  CCAGCCAACATCTGCA-CCATAACAAAGAATAAAGAAAAAAGAACCACAT  597
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGCCAACATCTGCACCCATAACAAAGAATAAAGAAAAAAGAACCACAT  600

seq1  GTATTCCTATTGATACACAGAGCTACCCT-AAAAACTCTTCAACCATGAT  646
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATTCCTATTGATACACAGAGCTACCCTAAAAAACTCTTCAACCATGAT  650

seq1  GTCTTATTT-AGGGTTTCCTTAGTTGTGAAGAGATACC-ATGACCAAGGC  694
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  GTCTTATTTAAGGGTTTCCTTAGTTGTGAAGAGATACCAATGACCAAGGC  700

seq1  AACTCTTAGGACAGC-ATTTAATTGGGGCTGGCTTACA-GGTTCTGAGGT  742
      |||||||| |||||| ||| |||||||||||||||||| |||||||||||
seq2  AACTCTTAAGACAGCAATTAAATTGGGGCTGGCTTACAGGGTTCTGAGGT  750

seq1  TAATTGGGGCTGATTT  758
       | | |||||||||||
seq2  AATTGGGGGCTGATTT  766